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Volumn 1, Issue 5, 2009, Pages 293-306

Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia

Author keywords

[No Author keywords available]

Indexed keywords

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; PROTEOBACTERIA; VERRUCOMICROBIA;

EID: 78649704686     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2009.00022.x     Document Type: Review
Times cited : (395)

References (63)
  • 1
    • 48249112161 scopus 로고    scopus 로고
    • Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2
    • Baani, M., and Liesack, W. (2008) Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2. Proc Natl Acad Sci USA 105: 10203-10208.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 10203-10208
    • Baani, M.1    Liesack, W.2
  • 3
    • 0027374969 scopus 로고
    • Revised taxonomy of the methanotrophs: description of Methylobacter gen. nov., emendation of Methylococcus, validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs
    • Bowman, J.P., Sly, L.I., Nichols, P.D., and Hayward, A.C. (1993) Revised taxonomy of the methanotrophs: description of Methylobacter gen. nov., emendation of Methylococcus, validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs. Int J Syst Bacteriol 43: 735-753.
    • (1993) Int J Syst Bacteriol , vol.43 , pp. 735-753
    • Bowman, J.P.1    Sly, L.I.2    Nichols, P.D.3    Hayward, A.C.4
  • 4
    • 0346668124 scopus 로고    scopus 로고
    • Accumulation chamber measurements of methane fluxes: application to volcanic-geothermal areas and landfills
    • Cardellini, C., Chiodinib, G., Frondinia, F., Granierib, D., Lewickic, J., and Peruzzia L. (2003) Accumulation chamber measurements of methane fluxes: application to volcanic-geothermal areas and landfills. Appl Geochem 18: 45-54.
    • (2003) Appl Geochem , vol.18 , pp. 45-54
    • Cardellini, C.1    Chiodinib, G.2    Frondinia, F.3    Granierib, D.4    Lewickic, J.5    Peruzzia, L.6
  • 5
    • 9644277222 scopus 로고    scopus 로고
    • Methane production and consumption in an active volcanic environment of southern Italy
    • Castaldi, S., and Tedesco, D. (2005) Methane production and consumption in an active volcanic environment of southern Italy. Chemosphere 58: 131-139.
    • (2005) Chemosphere , vol.58 , pp. 131-139
    • Castaldi, S.1    Tedesco, D.2
  • 7
    • 0037967152 scopus 로고    scopus 로고
    • Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view
    • Chistoserdova, L., Chen, S.W., Lapidus, A., and Lidstrom, M.E. (2003) Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view. J Bacteriol 185: 2980-2987.
    • (2003) J Bacteriol , vol.185 , pp. 2980-2987
    • Chistoserdova, L.1    Chen, S.W.2    Lapidus, A.3    Lidstrom, M.E.4
  • 9
    • 1442300926 scopus 로고    scopus 로고
    • Stable isotope pulse-chasing and compound specific stable carbon isotope analysis of phospholipid fatty acids to assess methane oxidizing bacterial populations in landfill cover soils
    • Crossman, Z.M., Abraham, F., and Evershed, R.P. (2004) Stable isotope pulse-chasing and compound specific stable carbon isotope analysis of phospholipid fatty acids to assess methane oxidizing bacterial populations in landfill cover soils. Environ Sci Technol 38: 1359-1367.
    • (2004) Environ Sci Technol , vol.38 , pp. 1359-1367
    • Crossman, Z.M.1    Abraham, F.2    Evershed, R.P.3
  • 10
    • 17644362722 scopus 로고    scopus 로고
    • 13C labelling of bacterial lipids in the characterisation of ambient methane-oxidising bacteria in soils
    • 13C labelling of bacterial lipids in the characterisation of ambient methane-oxidising bacteria in soils. Org Geochem 36: 769-778.
    • (2005) Org Geochem , vol.36 , pp. 769-778
    • Crossman, Z.M.1    Ineson, P.2    Evershed, R.P.3
  • 11
    • 0034075034 scopus 로고    scopus 로고
    • Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs
    • Dedysh, S.N., Liesack, W., Khmelenina, V.N., Suzina, N.E., Trotsenko, Y.A., Semrau, J.D., et al. (2000) Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs. Int J Syst Evol Microbiol 50: 955-969.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 955-969
    • Dedysh, S.N.1    Liesack, W.2    Khmelenina, V.N.3    Suzina, N.E.4    Trotsenko, Y.A.5    Semrau, J.D.6
  • 12
    • 0035489394 scopus 로고    scopus 로고
    • Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris
    • Dedysh, S.N., Derakshani, M., and Liesack, W. (2001) Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris. Appl Environ Microbiol 67: 4850-4857.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4850-4857
    • Dedysh, S.N.1    Derakshani, M.2    Liesack, W.3
  • 13
    • 0036151243 scopus 로고    scopus 로고
    • Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int J Syst Evol Microbiol
    • Dedysh, S.N., Khmelenina, V.N., Suzina, N.E., Trotsenko, Y.A., Semrau, J.D., Liesack, W., and Tiedje, J.M. (2002) Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int J Syst Evol Microbiol 52: 251-261.
    • (2002) , vol.52 , pp. 251-261
    • Dedysh, S.N.1    Khmelenina, V.N.2    Suzina, N.E.3    Trotsenko, Y.A.4    Semrau, J.D.5    Liesack, W.6    Tiedje, J.M.7
  • 14
    • 0037375288 scopus 로고    scopus 로고
    • Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes
    • Dedysh, S.N., Dunfield, P.F., Derakshani, M., Stubner, S., Heyer, J., and Liesack, W. (2003) Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes. FEMS Microbiol Ecol 43: 299-308.
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 299-308
    • Dedysh, S.N.1    Dunfield, P.F.2    Derakshani, M.3    Stubner, S.4    Heyer, J.5    Liesack, W.6
  • 16
    • 33947331719 scopus 로고    scopus 로고
    • Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing the 'signature' fatty acid of type I methanotrophs
    • Dedysh, S.N., Belova, S.E., Bodelier, P.L.E., Smirnova, K.V., Khmelenina, V.N., Chidthaisong, A., et al. (2007) Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing the 'signature' fatty acid of type I methanotrophs. Int J Syst Evol Microbiol 57: 472-479.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 472-479
    • Dedysh, S.N.1    Belova, S.E.2    Bodelier, P.L.E.3    Smirnova, K.V.4    Khmelenina, V.N.5    Chidthaisong, A.6
  • 17
    • 84890144621 scopus 로고    scopus 로고
    • The soil methane sink
    • Reay, D., Hewitt, C.N., Smith, K., and Grace, J. (eds). Wallingford, UK: CABI Publishing
    • Dunfield, P.F. (2006) The soil methane sink. In Greenhouse Gas Sinks. Reay, D., Hewitt, C.N., Smith, K., and Grace, J. (eds). Wallingford, UK: CABI Publishing, pp. 152-170.
    • (2006) Greenhouse Gas Sinks , pp. 152-170
    • Dunfield, P.F.1
  • 18
    • 0141614747 scopus 로고    scopus 로고
    • Methylocella silvestris sp. nov., a novel methanotrophic bacterium isolated from an acidic forest cambisol
    • Dunfield, P.F., Khmelenina, V.N., Suzina, N.E., Trotsenko, Y.A., and Dedysh, S.N. (2003) Methylocella silvestris sp. nov., a novel methanotrophic bacterium isolated from an acidic forest cambisol. Int J Syst Evol Microbiol 53: 1231-1239.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1231-1239
    • Dunfield, P.F.1    Khmelenina, V.N.2    Suzina, N.E.3    Trotsenko, Y.A.4    Dedysh, S.N.5
  • 19
    • 36849030274 scopus 로고    scopus 로고
    • Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
    • Dunfield, P.F., Yuryev, A., Senin, P., Smirnova, A.V., Stott, M.B., Hou, S., et al. (2007) Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450: 879-882.
    • (2007) Nature , vol.450 , pp. 879-882
    • Dunfield, P.F.1    Yuryev, A.2    Senin, P.3    Smirnova, A.V.4    Stott, M.B.5    Hou, S.6
  • 20
    • 0036882494 scopus 로고    scopus 로고
    • Geologic emissions of methane to the atmosphere
    • Etiope, G., and Klusman, R.W. (2002) Geologic emissions of methane to the atmosphere. Chemosphere 49: 777-789.
    • (2002) Chemosphere , vol.49 , pp. 777-789
    • Etiope, G.1    Klusman, R.W.2
  • 22
    • 0029415819 scopus 로고
    • Variations in the chemical and isotopic composition of fluids discharged from the Taupo Volcanic Zone New Zealand
    • Giggenbach, W. (1995) Variations in the chemical and isotopic composition of fluids discharged from the Taupo Volcanic Zone, New Zealand. J Volcanol Geotherm Res 68: 89-116.
    • (1995) J Volcanol Geotherm Res , vol.68 , pp. 89-116
    • Giggenbach, W.1
  • 24
    • 0000522843 scopus 로고
    • Phospholipid, ester-linked fatty-acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments
    • Guckert, J.B., Antworth, C.P., Nichols, P.D., and White, D.C. (1985) Phospholipid, ester-linked fatty-acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments. FEMS Microbiol Lett 31: 147-158.
    • (1985) FEMS Microbiol Lett , vol.31 , pp. 147-158
    • Guckert, J.B.1    Antworth, C.P.2    Nichols, P.D.3    White, D.C.4
  • 25
    • 34548628155 scopus 로고    scopus 로고
    • The biochemistry of methane oxidation
    • Hakemian, A.S., and Rosenzweig, A.C. (2007) The biochemistry of methane oxidation. Ann Rev Biochem 76: 223-241.
    • (2007) Ann Rev Biochem , vol.76 , pp. 223-241
    • Hakemian, A.S.1    Rosenzweig, A.C.2
  • 26
    • 0030003012 scopus 로고    scopus 로고
    • Methanotrophic bacteria
    • Hanson, R.S., and Hanson, T.E. (1996) Methanotrophic bacteria. Microbiol Rev 60: 439-471.
    • (1996) Microbiol Rev , vol.60 , pp. 439-471
    • Hanson, R.S.1    Hanson, T.E.2
  • 27
    • 0032172975 scopus 로고    scopus 로고
    • Diffuse emission of carbon dioxide, methane and helium-3 from Teide volcano, Tenerife Canary Island
    • Hernandez, P.A., Perez, N.M., Salazar, J.M., Nakai, S., Notsu, K., and Wakita, H. (1998) Diffuse emission of carbon dioxide, methane and helium-3 from Teide volcano, Tenerife, Canary Island. Geophys Res Lett 25: 3311-3314.
    • (1998) Geophys Res Lett , vol.25 , pp. 3311-3314
    • Hernandez, P.A.1    Perez, N.M.2    Salazar, J.M.3    Nakai, S.4    Notsu, K.5    Wakita, H.6
  • 28
    • 22744437398 scopus 로고    scopus 로고
    • Methylohalobius crimeensis gen. nov., sp. nov., a moderately halophilic, methanotrophic bacterium isolated from hypersaline lakes of Crimea
    • Heyer, J., Berger, U., Hardt, M., and Dunfield, P.F. (2005) Methylohalobius crimeensis gen. nov., sp. nov., a moderately halophilic, methanotrophic bacterium isolated from hypersaline lakes of Crimea. Int J Syst Evol Microbiol 55: 1817-1826.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1817-1826
    • Heyer, J.1    Berger, U.2    Hardt, M.3    Dunfield, P.F.4
  • 29
    • 0033551914 scopus 로고    scopus 로고
    • Abiogenic methane formation and isotopic fractionation under hydrothermal conditions
    • Horita, J., and Berndt M.E. (1999) Abiogenic methane formation and isotopic fractionation under hydrothermal conditions. Science 285: 1055-1057.
    • (1999) Science , vol.285 , pp. 1055-1057
    • Horita, J.1    Berndt, M.E.2
  • 30
    • 48249105854 scopus 로고    scopus 로고
    • Complete genome sequence of the extremely acidophilic methanotroph isolate V4, 'Methylacidiphilum infernorum', a representative of the bacterial phylum Verrucomicrobia
    • Hou, S., Makarova, K.S., Saw, J.H.W., Senin, P., Ly, B.V., Zhou, Z., et al. (2008) Complete genome sequence of the extremely acidophilic methanotroph isolate V4, 'Methylacidiphilum infernorum', a representative of the bacterial phylum Verrucomicrobia. Biol Direct 3: 26.
    • (2008) Biol Direct , vol.3 , pp. 26
    • Hou, S.1    Makarova, K.S.2    Saw, J.H.W.3    Senin, P.4    Ly, B.V.5    Zhou, Z.6
  • 31
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B.M., and Pace, N.R. (1998) Impact of culture independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 32
    • 38349102157 scopus 로고    scopus 로고
    • Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum
    • Islam, T., Jensen, S., Reigstad, L.J., Larsen, O., and Birkeland, N.K. (2008) Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum. Proc Natl Acad Sci USA 105: 300-304.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 300-304
    • Islam, T.1    Jensen, S.2    Reigstad, L.J.3    Larsen, O.4    Birkeland, N.K.5
  • 33
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen, P.H. (2006) Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 72: 1719-1728.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 34
    • 0034894280 scopus 로고    scopus 로고
    • Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the southeastern Transbaikal region and description of Methylomicrobium buryatense sp. nov
    • Kalyuzhnaya, M., Khmelenina, V., Eshinimaev, B., Suzina, N., Nikitin, D., Solonin, A., et al. (2001) Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the southeastern Transbaikal region and description of Methylomicrobium buryatense sp. nov. Syst Appl Microbiol 24: 166-176.
    • (2001) Syst Appl Microbiol , vol.24 , pp. 166-176
    • Kalyuzhnaya, M.1    Khmelenina, V.2    Eshinimaev, B.3    Suzina, N.4    Nikitin, D.5    Solonin, A.6
  • 35
    • 44349157927 scopus 로고    scopus 로고
    • Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution
    • Kalyuzhnaya, M.G., Hristova, K.R., Lidstrom, M.E., and Chistoserdova, L. (2008a) Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution. J Bacteriol 190: 3817-3823.
    • (2008) J Bacteriol , vol.190 , pp. 3817-3823
    • Kalyuzhnaya, M.G.1    Hristova, K.R.2    Lidstrom, M.E.3    Chistoserdova, L.4
  • 36
    • 46749119447 scopus 로고    scopus 로고
    • Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington
    • Kalyuzhnaya, M.G., Lidstrom, M.E., and Chistoserdova, L. (2008b) Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington. ISME J 2: 696-706.
    • (2008) ISME J , vol.2 , pp. 696-706
    • Kalyuzhnaya, M.G.1    Lidstrom, M.E.2    Chistoserdova, L.3
  • 37
    • 51349161191 scopus 로고    scopus 로고
    • Highresolution metagenomics targets specific functional types in complex microbial communities
    • Kalyuzhnaya, M.G., Lapidus, A., Ivanova, N., Copeland, A.C., McHardy, A.C., Szeto, E., et al. (2008c) Highresolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol 26: 1029-1034.
    • (2008) Nat Biotechnol , vol.26 , pp. 1029-1034
    • Kalyuzhnaya, M.G.1    Lapidus, A.2    Ivanova, N.3    Copeland, A.C.4    McHardy, A.C.5    Szeto, E.6
  • 38
    • 0034557416 scopus 로고    scopus 로고
    • Potential for surface gas flux measurements in exploration and surface evaluation of geothermal resources
    • Klusman, R.W., Moore, J.N., and LeRoy, M.P. (2000) Potential for surface gas flux measurements in exploration and surface evaluation of geothermal resources. Geothermics 29: 637-670.
    • (2000) Geothermics , vol.29 , pp. 637-670
    • Klusman, R.W.1    Moore, J.N.2    LeRoy, M.P.3
  • 39
    • 0242405670 scopus 로고    scopus 로고
    • Diversity and activity of methanotrophic bacteria in different upland soils
    • Knief, C., Lipski, A., and Dunfield, P.F. (2003) Diversity and activity of methanotrophic bacteria in different upland soils. Appl Environ Microbiol 69: 6703-6714.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6703-6714
    • Knief, C.1    Lipski, A.2    Dunfield, P.F.3
  • 40
    • 33144468700 scopus 로고    scopus 로고
    • The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration
    • Knief, C., Kolb, S., Bodelier, P.L.E., Lipski, A., and Dunfield P.F. (2006) The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration. Environ Microbiol 8: 321-333.
    • (2006) Environ Microbiol , vol.8 , pp. 321-333
    • Knief, C.1    Kolb, S.2    Bodelier, P.L.E.3    Lipski, A.4    Dunfield, P.F.5
  • 41
    • 20444494898 scopus 로고    scopus 로고
    • Gaia's breath -global methane exhalations
    • Kvenvolden, K.A., and Rogers, B.W. (2005) Gaia's breath -global methane exhalations. Mar Petrol Geol 22: 579-590.
    • (2005) Mar Petrol Geol , vol.22 , pp. 579-590
    • Kvenvolden, K.A.1    Rogers, B.W.2
  • 42
    • 4644335844 scopus 로고    scopus 로고
    • Molecular diversity of methanotrophs in Transbaikal soda lake sediments and identification of potentially active populations by stable isotope probing
    • Lin, J.L., Radajewski, S., Eshinimaev, B.T., Trotsenko, Y.A., McDonald, I.R., and Murrell, J.C. (2004) Molecular diversity of methanotrophs in Transbaikal soda lake sediments and identification of potentially active populations by stable isotope probing. Environ Microbiol 6: 1049-1060.
    • (2004) Environ Microbiol , vol.6 , pp. 1049-1060
    • Lin, J.L.1    Radajewski, S.2    Eshinimaev, B.T.3    Trotsenko, Y.A.4    McDonald, I.R.5    Murrell, J.C.6
  • 44
    • 40549104438 scopus 로고    scopus 로고
    • Molecular ecology techniques for the study of aerobic methanotrophs
    • McDonald, I.R., Bodrossy, L., Chen, Y., and Murrell, J.C. (2008) Molecular ecology techniques for the study of aerobic methanotrophs. Appl Environ Microbiol 74: 1305-1315.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1305-1315
    • McDonald, I.R.1    Bodrossy, L.2    Chen, Y.3    Murrell, J.C.4
  • 45
    • 0036200066 scopus 로고    scopus 로고
    • Identification of the functionally active methanotroph population in a peat soil microcosm by stable isotope probing
    • Morris, S.A., Radajewski, S., Willison, T.W., and Murrell, J.C. (2002) Identification of the functionally active methanotroph population in a peat soil microcosm by stable isotope probing. Appl Environ Microbiol 68: 1446-1453.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1446-1453
    • Morris, S.A.1    Radajewski, S.2    Willison, T.W.3    Murrell, J.C.4
  • 47
    • 36949016622 scopus 로고    scopus 로고
    • Methanotrophy below pH 1 by a new Verrucomicrobia species
    • Pol, A., Heijmans, K., Harhangi, H.R., Tedesco, D., and Jetten, M.S.M. (2007), Methanotrophy below pH 1 by a new Verrucomicrobia species. Nature 450: 874-878.
    • (2007) Nature , vol.450 , pp. 874-878
    • Pol, A.1    Heijmans, K.2    Harhangi, H.R.3    Tedesco, D.4    Jetten, M.S.M.5
  • 48
    • 34249313033 scopus 로고    scopus 로고
    • Methylosoma difficile gen. nov., a novel methanotroph enriched by gradient cultivation from littoral sediment of Lake Constance. Int J Sys Evol Microbiol
    • Rahalkar, M., Bussman, I., and Schink, B. (2007) Methylosoma difficile gen. nov., a novel methanotroph enriched by gradient cultivation from littoral sediment of Lake Constance. Int J Sys Evol Microbiol 57: 1073-1080.
    • (2007) , vol.57 , pp. 1073-1080
    • Rahalkar, M.1    Bussman, I.2    Schink, B.3
  • 49
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H.A., Strimmer, K., Vingron, M., and von Haeseler, A. (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 50
    • 0031943516 scopus 로고    scopus 로고
    • Methane production and methane consumption: a review of processes underlying wetland methane fluxes
    • Segers, R. (1998) Methane production and methane consumption: a review of processes underlying wetland methane fluxes. Biogeochemistry 41: 23-51.
    • (1998) Biogeochemistry , vol.41 , pp. 23-51
    • Segers, R.1
  • 53
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4 0
    • Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 54
    • 0141481207 scopus 로고    scopus 로고
    • Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2
    • Tchawa Yimga, M., Dunfield, P.F., Ricke, P., Heyer, J., and Liesack, W. (2003) Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2. Appl Environ Microbiol 69: 5593-5602.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5593-5602
    • Tchawa Yimga, M.1    Dunfield, P.F.2    Ricke, P.3    Heyer, J.4    Liesack, W.5
  • 55
    • 0036170315 scopus 로고    scopus 로고
    • Biology of extremophilic and extremotolerant methanotrophs
    • Trotsenko, Y.A., and Khmelenina, V.N. (2002) Biology of extremophilic and extremotolerant methanotrophs. Arch Microbiol 177: 123-131.
    • (2002) Arch Microbiol , vol.177 , pp. 123-131
    • Trotsenko, Y.A.1    Khmelenina, V.N.2
  • 56
    • 26244460742 scopus 로고    scopus 로고
    • Methylothermus thermalis gen. nov., sp. nov., a novel moderately thermophilic obligate methanotroph from a hot spring in Japan
    • Tsubota, J., Eshinimaev, B.T., Khmelenina, V.N., and Trotsenko, Y.A. (2005) Methylothermus thermalis gen. nov., sp. nov., a novel moderately thermophilic obligate methanotroph from a hot spring in Japan. Int J Syst Evol Microbiol 55: 1877-1884.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1877-1884
    • Tsubota, J.1    Eshinimaev, B.T.2    Khmelenina, V.N.3    Trotsenko, Y.A.4
  • 57
    • 40649113653 scopus 로고    scopus 로고
    • Combined structural and chemical analysis of the anammoxosome: a membrane-bounded intracytoplasmic compartment in anammox bacteria
    • Van Niftrik, L., Geerts, W.J., van Donselaar, E.G., Humbel, B.M., Yakushevska, A., Verkleij, A.J., et al. (2008) Combined structural and chemical analysis of the anammoxosome: a membrane-bounded intracytoplasmic compartment in anammox bacteria. J Struct Biol 161: 401-410.
    • (2008) J Struct Biol , vol.161 , pp. 401-410
    • Van Niftrik, L.1    Geerts, W.J.2    van Donselaar, E.G.3    Humbel, B.M.4    Yakushevska, A.5    Verkleij, A.J.6
  • 58
    • 33744927902 scopus 로고    scopus 로고
    • The Planctomycetes, Verrucomicrobia Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance
    • Wagner, M., and Horn, M. (2006) The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr Opin Biotechnol 17: 241-249.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 241-249
    • Wagner, M.1    Horn, M.2
  • 59
    • 0035068899 scopus 로고    scopus 로고
    • Methylosarcina fibrata gen. nov., sp. nov. and Methylosarcina quisquiliarum sp. nov., novel type I methanotrophs
    • Wise, M.G., McArthur, J.V., and Shimkets, L.J. (2001) Methylosarcina fibrata gen. nov., sp. nov. and Methylosarcina quisquiliarum sp. nov., novel type I methanotrophs. Int J Syst Evol Microbiol 51: 611-621.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 611-621
    • Wise, M.G.1    McArthur, J.V.2    Shimkets, L.J.3
  • 60
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4 a program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. (2007) PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 61
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang, Z., and Nielsen, R. (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol 17: 2-43.
    • (2000) Mol Biol Evol , vol.17 , pp. 2-43
    • Yang, Z.1    Nielsen, R.2
  • 62
    • 34249016262 scopus 로고    scopus 로고
    • Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan
    • Yoon, J., Yasumoto-Hirose, M., Katsuta, A., Sekiguchi, H., Matsuda, S., Kasai, H., and Yokota, A. (2007) Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan. Int J Syst Evol Microbiol 57: 959-963.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 959-963
    • Yoon, J.1    Yasumoto-Hirose, M.2    Katsuta, A.3    Sekiguchi, H.4    Matsuda, S.5    Kasai, H.6    Yokota, A.7
  • 63
    • 47249084286 scopus 로고    scopus 로고
    • Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae the order Verrucomicrobiales
    • Yoon, J., Matsuo, Y., Adachi, K., Nozawa, M., Matsuda, S., Kasai, H., and Yokota, A. (2008) Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int J Syst Evol Microbiol 58: 998-1007.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 998-1007
    • Yoon, J.1    Matsuo, Y.2    Adachi, K.3    Nozawa, M.4    Matsuda, S.5    Kasai, H.6    Yokota, A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.