-
1
-
-
0025249842
-
Membrane protein folding and oligomerization: The two-stage model
-
J.L. Popot, and D.M. Engelman Membrane protein folding and oligomerization: the two-stage model Biochemistry 29 1990 4031 4037
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
2
-
-
0036298185
-
Transmembrane domain mediated self-assembly of major coat protein subunits from Ff bacteriophage
-
R.A. Melnyk, A.W. Partridge, and C.M. Deber Transmembrane domain mediated self-assembly of major coat protein subunits from Ff bacteriophage J. Mol. Biol. 315 2002 63 72
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 63-72
-
-
Melnyk, R.A.1
Partridge, A.W.2
Deber, C.M.3
-
3
-
-
70350041315
-
Conserved polar residues stabilize transmembrane domains and promote oligomerization in human nucleoside triphosphate diphosphohydrolase 3
-
K.J. Gaddie, and T.L. Kirley Conserved polar residues stabilize transmembrane domains and promote oligomerization in human nucleoside triphosphate diphosphohydrolase 3 Biochemistry 48 2009 9437 9447
-
(2009)
Biochemistry
, vol.48
, pp. 9437-9447
-
-
Gaddie, K.J.1
Kirley, T.L.2
-
4
-
-
67349094494
-
Two GxxxG-like motifs facilitate promiscuous interactions of the human ErbB transmembrane domains
-
C. Escher, F. Cymer, and D. Schneider Two GxxxG-like motifs facilitate promiscuous interactions of the human ErbB transmembrane domains J. Mol. Biol. 389 2009 10 16
-
(2009)
J. Mol. Biol.
, vol.389
, pp. 10-16
-
-
Escher, C.1
Cymer, F.2
Schneider, D.3
-
5
-
-
0027092981
-
The glycophorin A transmembrane domain dimer: Sequence-specific propensity for a right-handed supercoil of helices
-
H.R. Treutlein, and M.A. Lemmon A.T. Brünger The glycophorin A transmembrane domain dimer: sequence-specific propensity for a right-handed supercoil of helices Biochemistry 31 1992 12726 12732
-
(1992)
Biochemistry
, vol.31
, pp. 12726-12732
-
-
Treutlein, H.R.1
Lemmon, M.A.2
Brünger, A.T.3
-
6
-
-
0029862745
-
A leucine zipper stabilizes the pentameric membrane domain of phospholamban and forms a coiled-coil pore structure
-
H.K.B. Simmerman, and Y.M. Kobayashi L.R. Jones A leucine zipper stabilizes the pentameric membrane domain of phospholamban and forms a coiled-coil pore structure J. Biol. Chem. 271 1996 5941 5946
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 5941-5946
-
-
Simmerman, H.K.B.1
Kobayashi, Y.M.2
Jones, L.R.3
-
7
-
-
46049088691
-
Protein-protein interactions in the membrane: Sequence, structural, and biological motifs
-
D.T. Moore, B.W. Berger, and W.F. DeGrado Protein-protein interactions in the membrane: sequence, structural, and biological motifs Structure 16 2008 991 1001
-
(2008)
Structure
, vol.16
, pp. 991-1001
-
-
Moore, D.T.1
Berger, B.W.2
Degrado, W.F.3
-
8
-
-
0026694442
-
Intramembrane helix-helix association in oligomerization and transmembrane signaling
-
B.J. Bormann, and D.M. Engelman Intramembrane helix-helix association in oligomerization and transmembrane signaling Annu. Rev. Biophys. Biomol. Struct. 21 1992 223 242
-
(1992)
Annu. Rev. Biophys. Biomol. Struct.
, vol.21
, pp. 223-242
-
-
Bormann, B.J.1
Engelman, D.M.2
-
9
-
-
84857554811
-
Protein folding in membranes
-
W.C. Wimley Protein folding in membranes Biochim. Biophys. Acta 1818 2012 925 926
-
(2012)
Biochim. Biophys. Acta
, vol.1818
, pp. 925-926
-
-
Wimley, W.C.1
-
10
-
-
68949110276
-
Energetics of ErbB1 transmembrane domain dimerization in lipid bilayers
-
L. Chen, and M. Merzlyakov K. Hristova Energetics of ErbB1 transmembrane domain dimerization in lipid bilayers Biophys. J. 96 2009 4622 4630
-
(2009)
Biophys. J.
, vol.96
, pp. 4622-4630
-
-
Chen, L.1
Merzlyakov, M.2
Hristova, K.3
-
11
-
-
77049106259
-
Unfolding a transmembrane helix dimer: A FRET study in mixed micelles
-
V. Anbazhagan, F. Cymer, and D. Schneider Unfolding a transmembrane helix dimer: a FRET study in mixed micelles Arch. Biochem. Biophys. 495 2010 159 164
-
(2010)
Arch. Biochem. Biophys.
, vol.495
, pp. 159-164
-
-
Anbazhagan, V.1
Cymer, F.2
Schneider, D.3
-
13
-
-
0033514311
-
TOXCAT: A measure of transmembrane helix association in a biological membrane
-
W.P. Russ, and D.M. Engelman TOXCAT: a measure of transmembrane helix association in a biological membrane Proc. Natl. Acad. Sci. USA 96 1999 863 868
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 863-868
-
-
Russ, W.P.1
Engelman, D.M.2
-
14
-
-
80054729335
-
The dimerization interface of the glycoprotein Ibβ transmembrane domain corresponds to polar residues within a leucine zipper motif
-
P. Wei, and X. Liu S.Z. Luo The dimerization interface of the glycoprotein Ibβ transmembrane domain corresponds to polar residues within a leucine zipper motif Protein Sci. 20 2011 1814 1823
-
(2011)
Protein Sci.
, vol.20
, pp. 1814-1823
-
-
Wei, P.1
Liu, X.2
Luo, S.Z.3
-
15
-
-
4143150532
-
Molecular dynamics simulations of micelle formation around dimeric Glycophorin A transmembrane helices
-
R. Braun, D.M. Engelman, and K. Schulten Molecular dynamics simulations of micelle formation around dimeric Glycophorin A transmembrane helices Biophys. J. 87 2004 754 763
-
(2004)
Biophys. J.
, vol.87
, pp. 754-763
-
-
Braun, R.1
Engelman, D.M.2
Schulten, K.3
-
16
-
-
33845316118
-
Transmembrane helix-helix interactions: Comparative simulations of the glycophorin a dimer
-
J.M. Cuthbertson, P.J. Bond, and M.S.P. Sansom Transmembrane helix-helix interactions: comparative simulations of the glycophorin a dimer Biochemistry 45 2006 14298 14310
-
(2006)
Biochemistry
, vol.45
, pp. 14298-14310
-
-
Cuthbertson, J.M.1
Bond, P.J.2
Sansom, M.S.P.3
-
17
-
-
1642485164
-
Coarse grained model for semiquantitative lipid simulations
-
S.J. Marrink, A.H. de Vries, and A.E. Mark Coarse grained model for semiquantitative lipid simulations J. Phys. Chem. B 108 2004 750 760
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 750-760
-
-
Marrink, S.J.1
De Vries, A.H.2
Mark, A.E.3
-
18
-
-
39449131104
-
Coarse-grained simulation: A high-throughput computational approach to membrane proteins
-
M.S.P. Sansom, K.A. Scott, and P.J. Bond Coarse-grained simulation: a high-throughput computational approach to membrane proteins Biochem. Soc. Trans. 36 2008 27 32
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 27-32
-
-
Sansom, M.S.P.1
Scott, K.A.2
Bond, P.J.3
-
19
-
-
34547474332
-
The MARTINI force field: Coarse grained model for biomolecular simulations
-
S.J. Marrink, and H.J. Risselada A.H. de Vries The MARTINI force field: coarse grained model for biomolecular simulations J. Phys. Chem. B 111 2007 7812 7824
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
De Vries, A.H.3
-
21
-
-
33644644163
-
Insertion and assembly of membrane proteins via simulation
-
P.J. Bond, and M.S.P. Sansom Insertion and assembly of membrane proteins via simulation J. Am. Chem. Soc. 128 2006 2697 2704
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 2697-2704
-
-
Bond, P.J.1
Sansom, M.S.P.2
-
23
-
-
84866342670
-
Polar/Ionizable residues in transmembrane segments: Effects on helix-helix packing
-
M. Bañó-Polo, and C. Baeza-Delgado I. Mingarro Polar/Ionizable residues in transmembrane segments: effects on helix-helix packing PLoS ONE 7 2012 e44263
-
(2012)
PLoS ONE
, vol.7
, pp. 44263
-
-
Bañó-Polo, M.1
Baeza-Delgado, C.2
Mingarro, I.3
-
24
-
-
0032510146
-
Immunoreceptor DAP12 bearing a tyrosine-based activation motif is involved in activating NK cells
-
L.L. Lanier, and B.C. Corliss J.H. Phillips Immunoreceptor DAP12 bearing a tyrosine-based activation motif is involved in activating NK cells Nature 391 1998 703 707
-
(1998)
Nature
, vol.391
, pp. 703-707
-
-
Lanier, L.L.1
Corliss, B.C.2
Phillips, J.H.3
-
25
-
-
0032100703
-
Association of DAP12 with activating CD94/NKG2C NK cell receptors
-
L.L. Lanier, and B.C. Corliss J.H. Phillips Association of DAP12 with activating CD94/NKG2C NK cell receptors Immunity 8 1998 693 701
-
(1998)
Immunity
, vol.8
, pp. 693-701
-
-
Lanier, L.L.1
Corliss, B.C.2
Phillips, J.H.3
-
26
-
-
42449102990
-
Up on the tightrope: Natural killer cell activation and inhibition
-
L.L. Lanier Up on the tightrope: natural killer cell activation and inhibition Nat. Immunol. 9 2008 495 502
-
(2008)
Nat. Immunol.
, vol.9
, pp. 495-502
-
-
Lanier, L.L.1
-
27
-
-
28544438330
-
Role of ITAM-containing adapter proteins and their receptors in the immune system and bone
-
M.B. Humphrey, L.L. Lanier, and M.C. Nakamura Role of ITAM-containing adapter proteins and their receptors in the immune system and bone Immunol. Rev. 208 2005 50 65
-
(2005)
Immunol. Rev.
, vol.208
, pp. 50-65
-
-
Humphrey, M.B.1
Lanier, L.L.2
Nakamura, M.C.3
-
28
-
-
58049200736
-
DAP10- and DAP12-associated receptors in innate immunity
-
L.L. Lanier DAP10- and DAP12-associated receptors in innate immunity Immunol. Rev. 227 2009 150 160
-
(2009)
Immunol. Rev.
, vol.227
, pp. 150-160
-
-
Lanier, L.L.1
-
29
-
-
35548988341
-
Common themes in the assembly and architecture of activating immune receptors
-
M.E. Call, and K.W. Wucherpfennig Common themes in the assembly and architecture of activating immune receptors Nat. Rev. Immunol. 7 2007 841 850
-
(2007)
Nat. Rev. Immunol.
, vol.7
, pp. 841-850
-
-
Call, M.E.1
Wucherpfennig, K.W.2
-
30
-
-
77958153191
-
The structural basis for intramembrane assembly of an activating immunoreceptor complex
-
M.E. Call, K.W. Wucherpfennig, and J.J. Chou The structural basis for intramembrane assembly of an activating immunoreceptor complex Nat. Immunol. 11 2010 1023 1029
-
(2010)
Nat. Immunol.
, vol.11
, pp. 1023-1029
-
-
Call, M.E.1
Wucherpfennig, K.W.2
Chou, J.J.3
-
31
-
-
50049085777
-
Specific heteromeric association of four transmembrane peptides derived from platelet glycoprotein Ib-IX complex
-
S.Z. Luo, and R. Li Specific heteromeric association of four transmembrane peptides derived from platelet glycoprotein Ib-IX complex J. Mol. Biol. 382 2008 448 457
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 448-457
-
-
Luo, S.Z.1
Li, R.2
-
33
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
B. Hess, and C. Kutzner E. Lindahl GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 4 2008 435 447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Lindahl, E.3
-
35
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
A. Sali, and T.L. Blundell Comparative protein modelling by satisfaction of spatial restraints J. Mol. Biol. 234 1993 779 815
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
36
-
-
53249119350
-
Helix-helix interactions in membrane proteins: Coarse-grained simulations of glycophorin a helix dimerization
-
E. Psachoulia, and P.W. Fowler M.S. Sansom Helix-helix interactions in membrane proteins: coarse-grained simulations of glycophorin a helix dimerization Biochemistry 47 2008 10503 10512
-
(2008)
Biochemistry
, vol.47
, pp. 10503-10512
-
-
Psachoulia, E.1
Fowler, P.W.2
Sansom, M.S.3
-
37
-
-
79958706179
-
Leukocyte integrin αlβ2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations
-
C.P. Chng, and S.M. Tan Leukocyte integrin αLβ2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations Proteins 79 2011 2203 2213
-
(2011)
Proteins
, vol.79
, pp. 2203-2213
-
-
Chng, C.P.1
Tan, S.M.2
-
38
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
H.J.C. Berendsen, and J.P.M. Postma J.R. Haak Molecular dynamics with coupling to an external bath J. Chem. Phys. 81 1984 3684 3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Haak, J.R.3
-
39
-
-
77149124571
-
Comment on "on using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron and W. F. van Gunsteren, Phys. Chem. Chem. Phys., 2009, 11, 1934
-
2257-2258
-
S.J. Marrink, and X. Periole A.H. de Vries Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron and W. F. van Gunsteren, Phys. Chem. Chem. Phys., 2009, 11, 1934 Phys. Chem. Chem. Phys. 12 2010 2254 2256 2257-2258
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 2254-2256
-
-
Marrink, S.J.1
Periole, X.2
De Vries, A.H.3
-
40
-
-
79954524314
-
From coarse-grained to atomistic: A serial multi-scale approach to membrane protein simulations
-
P.J. Stansfeld, and M.S.P. Sansom From coarse-grained to atomistic: a serial multi-scale approach to membrane protein simulations J. Chem. Theory Comput. 7 2011 1157 1166
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 1157-1166
-
-
Stansfeld, P.J.1
Sansom, M.S.P.2
-
41
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
-
C. Oostenbrink, and A. Villa W.F. van Gunsteren A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6 J. Comput. Chem. 25 2004 1656 1676
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Van Gunsteren, W.F.3
-
42
-
-
65249151900
-
Lipid models for united-atom molecular dynamics simulations of proteins
-
A. Kukol Lipid models for united-atom molecular dynamics simulations of proteins J. Chem. Theory Comput. 5 2009 615 626
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 615-626
-
-
Kukol, A.1
-
43
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
B. Hess, and H. Bekker J.G.E.M. Fraaije LINCS: a linear constraint solver for molecular simulations J. Comput. Chem. 18 1997 1463 1472
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Fraaije, J.G.E.M.3
-
45
-
-
2942700100
-
Dimerization of the transmembrane domain of Integrin alphaIIb subunit in cell membranes
-
R. Li, and R. Gorelik J.S. Bennett Dimerization of the transmembrane domain of Integrin alphaIIb subunit in cell membranes J. Biol. Chem. 279 2004 26666 26673
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26666-26673
-
-
Li, R.1
Gorelik, R.2
Bennett, J.S.3
-
46
-
-
84857652632
-
Transmembrane domains interactions within the membrane milieu: Principles, advances and challenges
-
A. Fink, and N. Sal-Man Y. Shai Transmembrane domains interactions within the membrane milieu: principles, advances and challenges Biochim. Biophys. Acta 1818 2012 974 983
-
(2012)
Biochim. Biophys. Acta
, vol.1818
, pp. 974-983
-
-
Fink, A.1
Sal-Man, N.2
Shai, Y.3
-
47
-
-
84857529575
-
Transmembrane helix-helix interactions are modulated by the sequence context and by lipid bilayer properties
-
F. Cymer, A. Veerappan, and D. Schneider Transmembrane helix-helix interactions are modulated by the sequence context and by lipid bilayer properties Biochim. Biophys. Acta 1818 2012 963 973
-
(2012)
Biochim. Biophys. Acta
, vol.1818
, pp. 963-973
-
-
Cymer, F.1
Veerappan, A.2
Schneider, D.3
-
48
-
-
84855465724
-
Transmembrane helix dimerization: Beyond the search for sequence motifs
-
E. Li, W.C. Wimley, and K. Hristova Transmembrane helix dimerization: beyond the search for sequence motifs Biochim. Biophys. Acta 1818 2012 183 193
-
(2012)
Biochim. Biophys. Acta
, vol.1818
, pp. 183-193
-
-
Li, E.1
Wimley, W.C.2
Hristova, K.3
-
49
-
-
33750022623
-
The structure of the zetazeta transmembrane dimer reveals features essential for its assembly with the T cell receptor
-
M.E. Call, and J.R. Schnell K.W. Wucherpfennig The structure of the zetazeta transmembrane dimer reveals features essential for its assembly with the T cell receptor Cell 127 2006 355 368
-
(2006)
Cell
, vol.127
, pp. 355-368
-
-
Call, M.E.1
Schnell, J.R.2
Wucherpfennig, K.W.3
-
50
-
-
22844432969
-
The identification of a minimal dimerization motif QXXS that enables homo- and hetero-association of transmembrane helices in vivo
-
N. Sal-Man, D. Gerber, and Y. Shai The identification of a minimal dimerization motif QXXS that enables homo- and hetero-association of transmembrane helices in vivo J. Biol. Chem. 280 2005 27449 27457
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 27449-27457
-
-
Sal-Man, N.1
Gerber, D.2
Shai, Y.3
-
51
-
-
84859391450
-
NMR observable-based structure refinement of DAP12-NKG2C activating immunoreceptor complex in explicit membranes
-
X. Cheng, and W. Im NMR observable-based structure refinement of DAP12-NKG2C activating immunoreceptor complex in explicit membranes Biophys. J. 102 2012 L27 L29
-
(2012)
Biophys. J.
, vol.102
-
-
Cheng, X.1
Im, W.2
|