-
1
-
-
0037145037
-
Integrins: bidirectional, allosteric signaling machines
-
Hynes RO. Integrins: bidirectional, allosteric signaling machines. Cell 2002; 110: 673-687.
-
(2002)
Cell
, vol.110
, pp. 673-687
-
-
Hynes, R.O.1
-
2
-
-
34247891506
-
Structural basis of integrin regulation and signaling
-
Luo B, Carman CV, Springer TA. Structural basis of integrin regulation and signaling. Annu Rev Immunol 2007; 25: 619-647.
-
(2007)
Annu Rev Immunol
, vol.25
, pp. 619-647
-
-
Luo, B.1
Carman, C.V.2
Springer, T.A.3
-
3
-
-
77957363101
-
Integrins as therapeutic targets: lessons and opportunities
-
Cox D, Brennan M, Moran N. Integrins as therapeutic targets: lessons and opportunities. Nat Rev Drug Discov 2010; 9: 804-820.
-
(2010)
Nat Rev Drug Discov
, vol.9
, pp. 804-820
-
-
Cox, D.1
Brennan, M.2
Moran, N.3
-
5
-
-
0033731119
-
Integrin cytoplasmic domain-binding proteins
-
Liu S, Calderwood DA, Ginsberg MH. Integrin cytoplasmic domain-binding proteins. J Cell Sci 2000; 113: 3563-3571.
-
(2000)
J Cell Sci
, vol.113
, pp. 3563-3571
-
-
Liu, S.1
Calderwood, D.A.2
Ginsberg, M.H.3
-
6
-
-
74949103168
-
Structural basis of integrin transmembrane activation
-
Wang W, Luo B. Structural basis of integrin transmembrane activation. J Cell Biochem 2010; 109: 447-452.
-
(2010)
J Cell Biochem
, vol.109
, pp. 447-452
-
-
Wang, W.1
Luo, B.2
-
7
-
-
41149094535
-
Permissive transmembrane helix heterodimerization is required for the expression of a functional integrin
-
Vararattanavech A, Tang M-L, Li H-Y, Wong C-H, Law SK, Torres J, Tan S-M. Permissive transmembrane helix heterodimerization is required for the expression of a functional integrin. Biochem J. 2008; 410: 495-502.
-
(2008)
Biochem J
, vol.410
, pp. 495-502
-
-
Vararattanavech, A.1
Tang, M.-L.2
Li, H.-Y.3
Wong, C.-H.4
Law, S.K.5
Torres, J.6
Tan, S.-M.7
-
8
-
-
4143085058
-
Folding of helical membrane proteins: the role of polar. GxxxG-like and proline motifs
-
Senes A, Engel DE, DeGrado WF. Folding of helical membrane proteins: the role of polar. GxxxG-like and proline motifs. Curr Opin Struct Biol 2004; 14: 465-479.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 465-479
-
-
Senes, A.1
Engel, D.E.2
DeGrado, W.F.3
-
9
-
-
64749101260
-
The structure of a receptor with two associating transmembrane domains on the cell surface: integrin αIIβ3
-
Zhu J, Luo B, Barth P, Schonbrun J, Baker D, Springer TA. The structure of a receptor with two associating transmembrane domains on the cell surface: integrin αIIβ3. Mol Cell 2009; 34: 234-249.
-
(2009)
Mol Cell
, vol.34
, pp. 234-249
-
-
Zhu, J.1
Luo, B.2
Barth, P.3
Schonbrun, J.4
Baker, D.5
Springer, T.A.6
-
10
-
-
65649127175
-
The structure of the integrin αIIβ3 transmembrane complex explains integrin transmembrane signalling
-
Lau T, Kim C, Ginsberg M, Ulmer TS. The structure of the integrin αIIβ3 transmembrane complex explains integrin transmembrane signalling. EMBO J 2009; 28: 1351-1361.
-
(2009)
EMBO J
, vol.28
, pp. 1351-1361
-
-
Lau, T.1
Kim, C.2
Ginsberg, M.3
Ulmer, T.S.4
-
11
-
-
76249120625
-
Consensus motif for integrin transmembrane helix association
-
Berger BW, Kulp DW, Span LM, DeGrado JL, Billings PC, Senes A, Bennett JS, DeGrado WF. Consensus motif for integrin transmembrane helix association. Proc Natl Acad Sci USA 2010; 107: 703-708.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 703-708
-
-
Berger, B.W.1
Kulp, D.W.2
Span, L.M.3
DeGrado, J.L.4
Billings, P.C.5
Senes, A.6
Bennett, J.S.7
DeGrado, W.F.8
-
12
-
-
59149102202
-
Disruption of the integrin αLβ2 transmembrane domain interface by β2 Thr-686 mutation activates αLβ2 and promotes micro-clustering of the αL subunits
-
Vararattanavech A, Lin X, Torres J, Tan S-M. Disruption of the integrin αLβ2 transmembrane domain interface by β2 Thr-686 mutation activates αLβ2 and promotes micro-clustering of the αL subunits. J Biol Chem 2009; 284: 3239-3249.
-
(2009)
J Biol Chem
, vol.284
, pp. 3239-3249
-
-
Vararattanavech, A.1
Lin, X.2
Torres, J.3
Tan, S.-M.4
-
13
-
-
77951926371
-
A transmembrane polar interaction is involved in the functional regulation of integrin αLβ2
-
Vararattanavech A, Chng C-P, Parthasarathy K, Tang X-Y, Torres J, Tan S-M. A transmembrane polar interaction is involved in the functional regulation of integrin αLβ2. J Mol Biol 2010; 398: 569-583.
-
(2010)
J Mol Biol
, vol.398
, pp. 569-583
-
-
Vararattanavech, A.1
Chng, C.-P.2
Parthasarathy, K.3
Tang, X.-Y.4
Torres, J.5
Tan, S.-M.6
-
14
-
-
14644391560
-
Targeting leukocyte integrins in human diseases
-
Yonekawa K, Harlan JM. Targeting leukocyte integrins in human diseases. J Leukoc Biol 2005; 77: 129-140.
-
(2005)
J Leukoc Biol
, vol.77
, pp. 129-140
-
-
Yonekawa, K.1
Harlan, J.M.2
-
15
-
-
22344438374
-
Importance of integrin LFA-1 deactivation for the generation of immune responses
-
Semmrich M, Smith A, Feterowski C, Beer S, Engelhardt B, Busch DH, Bartsch B, Laschinger M, Hogg N, Pfeffer K, Holzmann B. Importance of integrin LFA-1 deactivation for the generation of immune responses. J Exp Med 2005; 201: 1987-1998.
-
(2005)
J Exp Med
, vol.201
, pp. 1987-1998
-
-
Semmrich, M.1
Smith, A.2
Feterowski, C.3
Beer, S.4
Engelhardt, B.5
Busch, D.H.6
Bartsch, B.7
Laschinger, M.8
Hogg, N.9
Pfeffer, K.10
Holzmann, B.11
-
16
-
-
34547474332
-
The MARTINI force field: coarse grained model for biomolecular simulations
-
Marrink SJ, Risselada HJ, Yefimov S, Tieleman DP, de Vries AH. The MARTINI force field: coarse grained model for biomolecular simulations. J Phys Chem B 2007; 111: 7812-7824.
-
(2007)
J Phys Chem B
, vol.111
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
Yefimov, S.3
Tieleman, D.P.4
de Vries, A.H.5
-
17
-
-
49449113010
-
The MARTINI coarse-grained force field: extension to proteins
-
Monticelli L, Kandasamy SK, Periole X, Larson RG, Tieleman DP, Marrink S-J. The MARTINI coarse-grained force field: extension to proteins. J Chem Theory Comput 2008; 4: 819-834.
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.-J.6
-
18
-
-
53249119350
-
Helix-helix interactions in membrane proteins: coarse-grained simulations of glycophorin A helix dimerization
-
Psachoulia E, Fowler PW, Bond PJ, Sansom MSP. Helix-helix interactions in membrane proteins: coarse-grained simulations of glycophorin A helix dimerization. Biochemistry 2008; 47: 10503-10512.
-
(2008)
Biochemistry
, vol.47
, pp. 10503-10512
-
-
Psachoulia, E.1
Fowler, P.W.2
Bond, P.J.3
Sansom, M.S.P.4
-
19
-
-
77957901688
-
Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes
-
Sengupta D, Marrink SJ. Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes. Phys Chem Chem Phys 2010; 12: 12987-12996.
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 12987-12996
-
-
Sengupta, D.1
Marrink, S.J.2
-
20
-
-
77949509024
-
Molecular dynamics simulations of the dimerization of transmembrane α-helices
-
Psachoulia E, Marshall DP, Sansom MSP. Molecular dynamics simulations of the dimerization of transmembrane α-helices. Acc Chem Res 2010; 43: 388-396.
-
(2010)
Acc Chem Res
, vol.43
, pp. 388-396
-
-
Psachoulia, E.1
Marshall, D.P.2
Sansom, M.S.P.3
-
22
-
-
46249092554
-
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess B, Kutzner C, van der Spoel D, Lindahl E. GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. J Chem Theory Comput 2008; 4: 435-447.
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
van der Spoel, D.3
Lindahl, E.4
-
23
-
-
1642485164
-
Coarse grained model for semiquantitative lipid simulations
-
Marrink SJ, de Vries AH, Mark AE. Coarse grained model for semiquantitative lipid simulations. J Phys Chem B 2004; 108: 750-760.
-
(2004)
J Phys Chem B
, vol.108
, pp. 750-760
-
-
Marrink, S.J.1
de Vries, A.H.2
Mark, A.E.3
-
24
-
-
43949107499
-
Role of hydrogen bonding and helix-lipid interactions in transmembrane helix association
-
Lee J, Im W. Role of hydrogen bonding and helix-lipid interactions in transmembrane helix association. J Am Chem Soc 2008; 130: 6456-6462.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 6456-6462
-
-
Lee, J.1
Im, W.2
-
25
-
-
0027251833
-
Area/lipid of bilayers from NMR
-
Nagle JF. Area/lipid of bilayers from NMR. Biophys J 1993; 64: 1476-1481.
-
(1993)
Biophys J
, vol.64
, pp. 1476-1481
-
-
Nagle, J.F.1
-
26
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, Dinola A, Haak JR. Molecular dynamics with coupling to an external bath. J Chem Phys 1984; 81: 3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
27
-
-
77149124571
-
Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron, and W. F. van Gunsteren, Phys Chem Chem Phys 2009;11:1934
-
Marrink SJ, Periole X, Tieleman DP, de Vries AH. Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron, and W. F. van Gunsteren, Phys Chem Chem Phys 2009;11:1934. Phys Chem Chem Phys 2010; 12: 2254-2256.
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 2254-2256
-
-
Marrink, S.J.1
Periole, X.2
Tieleman, D.P.3
de Vries, A.H.4
-
29
-
-
1942423619
-
MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology
-
Feig M, Karanicolas J, Brooks CL. MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology. J Mol Graph Model 2004; 22: 377-395.
-
(2004)
J Mol Graph Model
, vol.22
, pp. 377-395
-
-
Feig, M.1
Karanicolas, J.2
Brooks, C.L.3
-
30
-
-
0342929614
-
Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
-
Torrie GM, Valleau JP. Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling. J Comput Phys 1977; 23: 187-199.
-
(1977)
J Comput Phys
, vol.23
, pp. 187-199
-
-
Torrie, G.M.1
Valleau, J.P.2
-
31
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
-
Kumar S, Rosenberg JM, Bouzida D, Swendsen RH, Kollman PA. The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method. J Comput Chem 1992; 13: 1011-1021.
-
(1992)
J Comput Chem
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Rosenberg, J.M.2
Bouzida, D.3
Swendsen, R.H.4
Kollman, P.A.5
-
32
-
-
77649275029
-
Intermonomer hydrogen bonds enhance GxxxG-driven dimerization of the BNIP3 transmembrane domain: roles for sequence context in helix-helix association in membranes
-
Lawrie CM, Sulistijo ES, MacKenzie KR. Intermonomer hydrogen bonds enhance GxxxG-driven dimerization of the BNIP3 transmembrane domain: roles for sequence context in helix-helix association in membranes. J Mol Biol 2010; 396: 924-936.
-
(2010)
J Mol Biol
, vol.396
, pp. 924-936
-
-
Lawrie, C.M.1
Sulistijo, E.S.2
MacKenzie, K.R.3
-
33
-
-
77958136190
-
Shedding of large functionally active CD11/CD18 integrin complexes from leukocyte membranes during synovial inflammation distinguishes three types of arthritis through differential epitope exposure
-
Gjelstrup LC, Boesen T, Kragstrup TW, Jørgensen A, Klein NJ, Thiel S, Deleuran BW, Vorup-Jensen T. Shedding of large functionally active CD11/CD18 integrin complexes from leukocyte membranes during synovial inflammation distinguishes three types of arthritis through differential epitope exposure. J Immunol 2010; 185: 4154-4168.
-
(2010)
J Immunol
, vol.185
, pp. 4154-4168
-
-
Gjelstrup, L.C.1
Boesen, T.2
Kragstrup, T.W.3
Jørgensen, A.4
Klein, N.J.5
Thiel, S.6
Deleuran, B.W.7
Vorup-Jensen, T.8
|