-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Mayers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Mayers, E.W.4
Lipman, D.J.5
-
2
-
-
15544374402
-
PCR ribotyping of Clostridium difficile isolates originating from human and animal sources
-
Arroyo LG, Kruth SA, Willey BM, Staempfli HR, Low DE & Weese JS (2005) PCR ribotyping of Clostridium difficile isolates originating from human and animal sources. J Med Microbiol 54: 163-166.
-
(2005)
J Med Microbiol
, vol.54
, pp. 163-166
-
-
Arroyo, L.G.1
Kruth, S.A.2
Willey, B.M.3
Staempfli, H.R.4
Low, D.E.5
Weese, J.S.6
-
3
-
-
70949092042
-
Diversity of Clostridium difficile in pigs and other animals in Slovenia
-
Avbersek J, Janezic S, Pate M, Rupnik M, Zidaric V, Logar K, Vengust M, Zemljic M, Pirs T & Ocepek M (2009) Diversity of Clostridium difficile in pigs and other animals in Slovenia. Anaerobe 15: 252-255.
-
(2009)
Anaerobe
, vol.15
, pp. 252-255
-
-
Avbersek, J.1
Janezic, S.2
Pate, M.3
Rupnik, M.4
Zidaric, V.5
Logar, K.6
Vengust, M.7
Zemljic, M.8
Pirs, T.9
Ocepek, M.10
-
4
-
-
51349150294
-
Estimation of faecal carriage of Clostridium difficile in patients with ulcerative colitis using real time polymerase chain reaction
-
Balamurugan R, Balaji V & Ramakrishna BS (2008) Estimation of faecal carriage of Clostridium difficile in patients with ulcerative colitis using real time polymerase chain reaction. Indian J Med Res 127: 472-477.
-
(2008)
Indian J Med Res
, vol.127
, pp. 472-477
-
-
Balamurugan, R.1
Balaji, V.2
Ramakrishna, B.S.3
-
5
-
-
10744225600
-
A European survey of diagnostic methods and testing protocols for Clostridium difficile
-
Barbut F, Delmée M, Brazier JS et al. (2003) A European survey of diagnostic methods and testing protocols for Clostridium difficile. Clin Microbiol Infect 9: 989-996.
-
(2003)
Clin Microbiol Infect
, vol.9
, pp. 989-996
-
-
Barbut, F.1
Delmée, M.2
Brazier, J.S.3
-
6
-
-
0020693946
-
Household pets as a potential reservoir for Clostridium difficile infection
-
Borriello SP, Honour P, Turner T & Barclay F (1983) Household pets as a potential reservoir for Clostridium difficile infection. J Clin Pathol 36: 84-87.
-
(1983)
J Clin Pathol
, vol.36
, pp. 84-87
-
-
Borriello, S.P.1
Honour, P.2
Turner, T.3
Barclay, F.4
-
7
-
-
64149097786
-
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
-
Bustin SA, Benes V, Garson JA et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55: 611-622.
-
(2009)
Clin Chem
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
-
8
-
-
77951026738
-
Clinical practice guidelines for Clostridium difficile infection in adults: 2010 update by the Society for Healthcare Epidemiology of America (SHEA) and the Infectious Diseases Society of America (IDSA)
-
Society for Healthcare Epidemiology of America; Infectious Diseases Society of America
-
Cohen SH, Gerding DN, Johnson S, Kelly CP, Loo VG, McDonald LC, Pepin J & Wilcox MH; Society for Healthcare Epidemiology of America; Infectious Diseases Society of America (2010) Clinical practice guidelines for Clostridium difficile infection in adults: 2010 update by the Society for Healthcare Epidemiology of America (SHEA) and the Infectious Diseases Society of America (IDSA). Infect Control Hosp Epidemiol 31: 431-455.
-
(2010)
Infect Control Hosp Epidemiol
, vol.31
, pp. 431-455
-
-
Cohen, S.H.1
Gerding, D.N.2
Johnson, S.3
Kelly, C.P.4
Loo, V.G.5
McDonald, L.C.6
Pepin, J.7
Wilcox, M.H.8
-
9
-
-
84858971853
-
Prevalence and molecular characterization of Clostridium difficile isolated from feedlot beef cattle upon arrival and mid-feeding period
-
Costa MC, Reid-Smith R, Gow S, Hannon SJ, Booker C, Rousseau J, Benedict KM, Morley PS & Weese JS (2012) Prevalence and molecular characterization of Clostridium difficile isolated from feedlot beef cattle upon arrival and mid-feeding period. BMC Vet Res 8: 38.
-
(2012)
BMC Vet Res
, vol.8
, pp. 38
-
-
Costa, M.C.1
Reid-Smith, R.2
Gow, S.3
Hannon, S.J.4
Booker, C.5
Rousseau, J.6
Benedict, K.M.7
Morley, P.S.8
Weese, J.S.9
-
10
-
-
33748325739
-
Routes to improving the reliability of low level DNA analysis using real-time PCR
-
Ellison SLR, English CA, Burns MJ & Keer JT (2006) Routes to improving the reliability of low level DNA analysis using real-time PCR. BMC Biotechnol 6: 33.
-
(2006)
BMC Biotechnol
, vol.6
, pp. 33
-
-
Ellison, S.L.R.1
English, C.A.2
Burns, M.J.3
Keer, J.T.4
-
11
-
-
0034710344
-
An investigation of the rigor of interpretation rules for STRs derived from less than 100 pg of DNA
-
Gill P, Whitaker J, Flaxman C, Brown N & Buckleton J (2000) An investigation of the rigor of interpretation rules for STRs derived from less than 100 pg of DNA. Forensic Sci Int 112: 17-40.
-
(2000)
Forensic Sci Int
, vol.112
, pp. 17-40
-
-
Gill, P.1
Whitaker, J.2
Flaxman, C.3
Brown, N.4
Buckleton, J.5
-
12
-
-
62449124471
-
Clostridium difficile: a new zoonotic agent?
-
Indra A, Lassnig H, Baliko N, Much P, Fiedler A, Huhulescu S & Allerberger F (2009) Clostridium difficile: a new zoonotic agent? Wien Klin Wochenschr 121: 91-95.
-
(2009)
Wien Klin Wochenschr
, vol.121
, pp. 91-95
-
-
Indra, A.1
Lassnig, H.2
Baliko, N.3
Much, P.4
Fiedler, A.5
Huhulescu, S.6
Allerberger, F.7
-
13
-
-
46349103285
-
Toxinotype V Clostridium difficile in humans and food animals
-
Jhung MA, Thompson AD, Killgore GE, Zukowski WE, Songer G, Warny M, Johnson S, Gerding DN, McDonald LC & Limbago BM (2008) Toxinotype V Clostridium difficile in humans and food animals. Emerg Infect Dis 14: 1039-1045.
-
(2008)
Emerg Infect Dis
, vol.14
, pp. 1039-1045
-
-
Jhung, M.A.1
Thompson, A.D.2
Killgore, G.E.3
Zukowski, W.E.4
Songer, G.5
Warny, M.6
Johnson, S.7
Gerding, D.N.8
McDonald, L.C.9
Limbago, B.M.10
-
14
-
-
34250660545
-
Prevalence of PCR ribotypes among Clostridium difficile isolates from pigs, calves, and other species
-
Keel K, Brazier JS, Post KW, Weese JS & Songer JG (2007) Prevalence of PCR ribotypes among Clostridium difficile isolates from pigs, calves, and other species. J Clin Microbiol 45: 1963-1964.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 1963-1964
-
-
Keel, K.1
Brazier, J.S.2
Post, K.W.3
Weese, J.S.4
Songer, J.G.5
-
15
-
-
10344229473
-
A new periparturient disease in Eastern Europe, Clostridium difficile causes postparturient sow losses
-
Kiss D & Bilkei G (2005) A new periparturient disease in Eastern Europe, Clostridium difficile causes postparturient sow losses. Theriogenology 63: 17-23.
-
(2005)
Theriogenology
, vol.63
, pp. 17-23
-
-
Kiss, D.1
Bilkei, G.2
-
16
-
-
84860338920
-
Evaluation of combined high-efficiency DNA extraction and real-time PCR for detection of Mycobacterium avium subsp. paratuberculosis in subclinically infected dairy cattle: comparison with faecal culture, milk real-time PCR and milk ELISA
-
Logar K, Kopinč R, Bandelj P, Starič J, Lapanje A & Ocepek M (2012) Evaluation of combined high-efficiency DNA extraction and real-time PCR for detection of Mycobacterium avium subsp. paratuberculosis in subclinically infected dairy cattle: comparison with faecal culture, milk real-time PCR and milk ELISA. BMC Vet Res 8: 49.
-
(2012)
BMC Vet Res
, vol.8
, pp. 49
-
-
Logar, K.1
Kopinč, R.2
Bandelj, P.3
Starič, J.4
Lapanje, A.5
Ocepek, M.6
-
17
-
-
84866180610
-
Sensitive quantification of Clostridium difficile by reverse transcription - quantitative PCR (RT-qPCR) targeting rRNA molecules
-
Matsuda K, Tsuji H, Asahara T, Takahashi T, Hubota H, Nagata S, Yamashiro Y & Nomoto K (2012) Sensitive quantification of Clostridium difficile by reverse transcription - quantitative PCR (RT-qPCR) targeting rRNA molecules. Appl Environ Microbiol 78: 5111-5118.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 5111-5118
-
-
Matsuda, K.1
Tsuji, H.2
Asahara, T.3
Takahashi, T.4
Hubota, H.5
Nagata, S.6
Yamashiro, Y.7
Nomoto, K.8
-
18
-
-
84891724924
-
Real-time PCR for specific detection of three phytoplasmas from the apple proliferation group
-
Mehle N, Nikolić P, Gruden K, Ravnikar M & Dermastia M (2012) Real-time PCR for specific detection of three phytoplasmas from the apple proliferation group. Methods Mol Biol 938: 269-281.
-
(2012)
Methods Mol Biol
, vol.938
, pp. 269-281
-
-
Mehle, N.1
Nikolić, P.2
Gruden, K.3
Ravnikar, M.4
Dermastia, M.5
-
19
-
-
57149132237
-
Quantitative detection of Clostridium difficile in hospital environmental samples by real-time polymerase chain reaction
-
Mutters R, Nonnenmacher C, Susin C, Albrecht U, Kropatsch R & Schumacher S (2009) Quantitative detection of Clostridium difficile in hospital environmental samples by real-time polymerase chain reaction. J Hosp Infect 71: 43-48.
-
(2009)
J Hosp Infect
, vol.71
, pp. 43-48
-
-
Mutters, R.1
Nonnenmacher, C.2
Susin, C.3
Albrecht, U.4
Kropatsch, R.5
Schumacher, S.6
-
20
-
-
80053492519
-
Quantification of Clostridium difficile in antibiotic-associated-diarrhea patients
-
Naaber P, Stsepetova J, Smidt I et al. (2011) Quantification of Clostridium difficile in antibiotic-associated-diarrhea patients. J Clin Microbiol 49: 3656-3658.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 3656-3658
-
-
Naaber, P.1
Stsepetova, J.2
Smidt, I.3
-
21
-
-
0027484742
-
A molecular characterization of Clostridium difficile isolates from humans, animals and their environments
-
O'Neill G, Adams JE, Bowman R & Riley TV (1993) A molecular characterization of Clostridium difficile isolates from humans, animals and their environments. Epidemiol Infect 111: 257-264.
-
(1993)
Epidemiol Infect
, vol.111
, pp. 257-264
-
-
O'Neill, G.1
Adams, J.E.2
Bowman, R.3
Riley, T.V.4
-
22
-
-
12844251441
-
Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR
-
Penders J, Vink C, Driessen C, London N, Thijs C & Stobberingh EE (2005) Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR. FEMS Microbiol Lett 243: 141-147.
-
(2005)
FEMS Microbiol Lett
, vol.243
, pp. 141-147
-
-
Penders, J.1
Vink, C.2
Driessen, C.3
London, N.4
Thijs, C.5
Stobberingh, E.E.6
-
23
-
-
84900918601
-
-
Springer, Dordrecht
-
Pestana EA, Belak S, Diallo A, Crowther JR & Viljoen GJ (2010) Early, Rapid and Sensitive Veterinary Molecular Diagnostics - Real Time PCR Applications. Springer, Dordrecht.
-
(2010)
Early, Rapid and Sensitive Veterinary Molecular Diagnostics - Real Time PCR Applications
-
-
Pestana, E.A.1
Belak, S.2
Diallo, A.3
Crowther, J.R.4
Viljoen, G.J.5
-
24
-
-
45249086113
-
Isolation of Clostridium difficile from food animals in Slovenia
-
Pirs T, Ocepek M & Rupnik M (2008) Isolation of Clostridium difficile from food animals in Slovenia. J Med Microbiol 57: 790-792.
-
(2008)
J Med Microbiol
, vol.57
, pp. 790-792
-
-
Pirs, T.1
Ocepek, M.2
Rupnik, M.3
-
25
-
-
9644268216
-
Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
-
Rintilla T, Kassinen A, Malinen E, Krogius L & Palva A (2004) Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR. J App Microbiol 97: 1166-1177.
-
(2004)
J App Microbiol
, vol.97
, pp. 1166-1177
-
-
Rintilla, T.1
Kassinen, A.2
Malinen, E.3
Krogius, L.4
Palva, A.5
-
26
-
-
33750562131
-
Clostridium difficile PCR ribotypes in calves, Canada
-
Rodriguez-Palacios A, Staempfli HR, Duffield T, Peregrine AS, Trotz-Williams LA, Arroyo LG, Brazier JS & Weese JS (2006) Clostridium difficile PCR ribotypes in calves, Canada. Emerg Infect Dis 12: 1730-1736.
-
(2006)
Emerg Infect Dis
, vol.12
, pp. 1730-1736
-
-
Rodriguez-Palacios, A.1
Staempfli, H.R.2
Duffield, T.3
Peregrine, A.S.4
Trotz-Williams, L.A.5
Arroyo, L.G.6
Brazier, J.S.7
Weese, J.S.8
-
27
-
-
33847374776
-
Clostridium difficile in retail ground meat, Canada
-
Rodriguez-Palacios A, Staempfli HR, Duffield T & Weese JS (2007) Clostridium difficile in retail ground meat, Canada. Emerg Infect Dis 13: 485-487.
-
(2007)
Emerg Infect Dis
, vol.13
, pp. 485-487
-
-
Rodriguez-Palacios, A.1
Staempfli, H.R.2
Duffield, T.3
Weese, J.S.4
-
28
-
-
34147093284
-
Is Clostridium difficile-associated infection a potentially zoonotic and foodborne disease?
-
Rupnik M (2007) Is Clostridium difficile-associated infection a potentially zoonotic and foodborne disease? Clin Microbiol Infect 13: 457-459.
-
(2007)
Clin Microbiol Infect
, vol.13
, pp. 457-459
-
-
Rupnik, M.1
-
29
-
-
67649391053
-
Clostridium difficile infection: new developments in epidemiology and pathogenesis
-
Rupnik M, Wilcox MH & Gerding DN (2009) Clostridium difficile infection: new developments in epidemiology and pathogenesis. Nat Rev Microbiol 7: 526-536.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 526-536
-
-
Rupnik, M.1
Wilcox, M.H.2
Gerding, D.N.3
-
30
-
-
33750972041
-
The mosaic nature of intergenic 16S- 23S rRNA spacer regions suggests rRNA operon copy number variation in Clostridium difficile stains
-
Sadeghifard N, Gürtler V, Beer M & Seviour RJ (2006) The mosaic nature of intergenic 16S- 23S rRNA spacer regions suggests rRNA operon copy number variation in Clostridium difficile stains. Appl Environ Microbiol 72: 7311-7323.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7311-7323
-
-
Sadeghifard, N.1
Gürtler, V.2
Beer, M.3
Seviour, R.J.4
-
31
-
-
0345807421
-
Infection of neonatal swine with Clostridium difficile
-
Songer JG, Post KW, Larson DJ, Jost BH & Glock RD (2000) Infection of neonatal swine with Clostridium difficile. Swine Health Prod 8: 185-189.
-
(2000)
Swine Health Prod
, vol.8
, pp. 185-189
-
-
Songer, J.G.1
Post, K.W.2
Larson, D.J.3
Jost, B.H.4
Glock, R.D.5
-
32
-
-
25144469664
-
Toxin production by an emerging strain of Clostridium difficile associated with outbreaks of severe disease in North America and Europe
-
Warny M, Pepin J, Fang A, Killgore G, Thompson A, Brazier J, Frost E & McDonald LC (2005) Toxin production by an emerging strain of Clostridium difficile associated with outbreaks of severe disease in North America and Europe. Lancet 366: 1079-1084.
-
(2005)
Lancet
, vol.366
, pp. 1079-1084
-
-
Warny, M.1
Pepin, J.2
Fang, A.3
Killgore, G.4
Thompson, A.5
Brazier, J.6
Frost, E.7
McDonald, L.C.8
-
33
-
-
71849085180
-
Clostridium difficile in food-innocent bystander or serious threat?
-
Weese JS (2010) Clostridium difficile in food-innocent bystander or serious threat? Clin Microbiol Infect 16: 3-10.
-
(2010)
Clin Microbiol Infect
, vol.16
, pp. 3-10
-
-
Weese, J.S.1
-
34
-
-
0035403329
-
A prospective study of the roles of Clostridium difficile and enterotoxigenic Clostridium perfringens in equine diarrhoea
-
Weese JS, Staempfli HR & Prescott JF (2001a) A prospective study of the roles of Clostridium difficile and enterotoxigenic Clostridium perfringens in equine diarrhoea. Equine Vet J 33: 403-409.
-
(2001)
Equine Vet J
, vol.33
, pp. 403-409
-
-
Weese, J.S.1
Staempfli, H.R.2
Prescott, J.F.3
-
35
-
-
0035403850
-
The roles of Clostridium difficile and enterotoxigenic Clostridium perfringens in diarrhea in dogs
-
Weese JS, Staempfli HR, Prescott JF, Kruth SA, Greenwood SJ & Weese HE (2001b) The roles of Clostridium difficile and enterotoxigenic Clostridium perfringens in diarrhea in dogs. J Vet Intern Med 15: 374-378.
-
(2001)
J Vet Intern Med
, vol.15
, pp. 374-378
-
-
Weese, J.S.1
Staempfli, H.R.2
Prescott, J.F.3
Kruth, S.A.4
Greenwood, S.J.5
Weese, H.E.6
-
36
-
-
60149085427
-
High diversity of Clostridium difficile genotypes isolated from a single poultry farm producing replacement laying hens
-
Zidaric V, Zemljic M, Janezic S, Kocuvan A & Rupnik M (2008) High diversity of Clostridium difficile genotypes isolated from a single poultry farm producing replacement laying hens. Anaerobe 14: 325-327.
-
(2008)
Anaerobe
, vol.14
, pp. 325-327
-
-
Zidaric, V.1
Zemljic, M.2
Janezic, S.3
Kocuvan, A.4
Rupnik, M.5
-
37
-
-
45249099998
-
Increase in adult Clostridium difficile-related hospitalizations and case-fatality rate, United States, 2000-2005
-
Zilberberg MD, Shorr AF & Kollef MH (2008) Increase in adult Clostridium difficile-related hospitalizations and case-fatality rate, United States, 2000-2005. Emerg Infect Dis 14: 829-831.
-
(2008)
Emerg Infect Dis
, vol.14
, pp. 829-831
-
-
Zilberberg, M.D.1
Shorr, A.F.2
Kollef, M.H.3
|