Transcription-induced chromatin association of RNA surveillance factors mediates facultative heterochromatin formation in fission yeast

Genes to Cells

Volumn 18, Issue 4, 2013, Pages 327-339

  Tashiro, Sanki ^a   Asano, Tomohiro ^a   Kanoh, Junko ^a,b   Ishikawa, Fuyuki ^a  

^a KYOTO UNIVERSITY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3; HISTONE LYSINE METHYLTRANSFERASE; LYSINE DERIVATIVE; PROTEIN; PROTEIN CHP 1; PROTEIN EPE 1; RNA; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; GENE; GENE CONTROL; GENE EXPRESSION; GENE LOCUS; GENE SILENCING; GENE TRANSFER; GENETIC ASSOCIATION; HETEROCHROMATIN; HISTONE METHYLATION; MEI4 GENE; MEIOSIS; NONHUMAN; PRIORITY JOURNAL; SSM4 GENE; YEAST;

CELL CYCLE PROTEINS; CHROMATIN ASSEMBLY AND DISASSEMBLY; HETEROCHROMATIN; HISTONES; METHYLATION; METHYLTRANSFERASES; MICROTUBULE PROTEINS; MRNA CLEAVAGE AND POLYADENYLATION FACTORS; NUCLEAR PROTEINS; PROTEIN PROCESSING, POST-TRANSLATIONAL; RNA, MESSENGER; RNA, SMALL NUCLEAR; RNA-BINDING PROTEINS; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; TRANSCRIPTION, GENETIC;

SCHIZOSACCHAROMYCETACEAE;

EID: 84875608914     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/gtc.12038     Document Type: Article

References (25)

1. Bahler, J., Wu, J.Q., Longtine, M.S., Shah, N.G., McKenzie, A. III, Steever, A.B., Wach, A., Philippsen, P. & Pringle, J.R. (1998) Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14, 943-951.
2. Basi, G., Schmid, E. & Maundrell, K. (1993) TATA box mutations in the Schizosaccharomyces pombe nmt1 promoter affect transcription efficiency but not the transcription start point or thiamine repressibility. Gene 123, 131-136.
3. Cam, H.P., Sugiyama, T., Chen, E.S., Chen, X., FitzGerald, P.C. & Grewal, S.I. (2005) Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome. Nat. Genet. 37, 809-819.
4. Cremona, N., Potter, K. & Wise, J.A. (2011) A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts. Mol. Biol. Cell 22, 66-77.
5. Grewal, S.I. & Jia, S. (2007) Heterochromatin revisited. Nat. Rev. Genet. 8, 35-46.
6. Hansen, K.R., Ibarra, P.T. & Thon, G. (2006) Evolutionary-conserved telomere-linked helicase genes of fission yeast are repressed by silencing factors, RNAi components and the telomere-binding protein Taz1. Nucleic Acids Res. 34, 78-88.
7. Harigaya, Y., Tanaka, H., Yamanaka, S., Tanaka, K., Watanabe, Y., Tsutsumi, C., Chikashige, Y., Hiraoka, Y., Yamashita, A. & Yamamoto, M. (2006) Selective elimination of messenger RNA prevents an incidence of untimely meiosis. Nature 442, 45-50.
8. Hentges, P., Van Driessche, B., Tafforeau, L., Vandenhaute, J. & Carr, A.M. (2005) Three novel antibiotic marker cassettes for gene disruption and marker switching in Schizosaccharomyces pombe. Yeast 22, 1013-1019.
9. Hiriart, E., Vavasseur, A., Touat-Todeschini, L., Yamashita, A., Gilquin, B., Lambert, E., Perot, J., Shichino, Y., Nazaret, N., Boyault, C., Lachuer, J., Perazza, D., Yamamoto, M. & Verdel, A. (2012) Mmi1 RNA surveillance machinery directs RNAi complex RITS to specific meiotic genes in fission yeast. EMBO J. 31, 2296-2308.
10. Kan, F., Davidson, M.K. & Wahls, W.P. (2011) Meiotic recombination protein Rec12: functional conservation, crossover homeostasis and early crossover/non-crossover decision. Nucleic Acids Res. 39, 1460-1472.
11. Kimura, H., Hayashi-Takanaka, Y., Goto, Y., Takizawa, N. & Nozaki, N. (2008) The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies. Cell Struct. Funct. 33, 61-73.
12. Miyoshi, T., Kanoh, J., Saito, M. & Ishikawa, F. (2008) Fission yeast Pot1-Tpp1 protects telomeres and regulates telomere length. Science 320, 1341-1344.
13. Moreno, S., Klar, A. & Nurse, P. (1991) Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194, 795-823.
14. Motamedi, M.R., Verdel, A., Colmenares, S.U., Gerber, S.A., Gygi, S.P. & Moazed, D. (2004) Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs. Cell 119, 789-802.
15. Nakayama, J., Rice, J.C., Strahl, B.D., Allis, C.D. & Grewal, S.I. (2001) Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science 292, 110-113.
16. Sadaie, M., Iida, T., Urano, T. & Nakayama, J. (2004) A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast. EMBO J. 23, 3825-3835.
17. Schalch, T., Job, G., Shanker, S., Partridge, J.F. & Joshua-Tor, L. (2011) The Chp1-Tas3 core is a multifunctional platform critical for gene silencing by RITS. Nat. Struct. Mol. Biol. 18, 1351-1357.
18. Sugiyama, T. & Sugioka-Sugiyama, R. (2011) Red1 promotes the elimination of meiosis-specific mRNAs in vegetatively growing fission yeast. EMBO J. 30, 1027-1039.
19. Suyama, M. & Ohara, O. (2003) DomCut: prediction of inter-domain linker regions in amino acid sequences. Bioinformatics 19, 673-674.
20. Trojer, P. & Reinberg, D. (2007) Facultative heterochromatin: is there a distinctive molecular signature? Mol. Cell 28, 1-13.
21. Verdel, A., Jia, S., Gerber, S., Sugiyama, T., Gygi, S., Grewal, S.I. & Moazed, D. (2004) RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303, 672-676.
22. Volpe, T.A., Kidner, C., Hall, I.M., Teng, G., Grewal, S.I. & Martienssen, R.A. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297, 1833-1837.
23. Yamanaka, S., Yamashita, A., Harigaya, Y., Iwata, R. & Yamamoto, M. (2010) Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells. EMBO J. 29, 2173-2181.
24. Zofall, M. & Grewal, S.I. (2006) Swi6/HP1 recruits a JmjC domain protein to facilitate transcription of heterochromatic repeats. Mol. Cell 22, 681-692.
25. Zofall, M., Yamanaka, S., Reyes-Turcu, F.E., Zhang, K., Rubin, C. & Grewal, S.I. (2012) RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation. Science 335, 96-100.