-
1
-
-
0036200214
-
Reactive nitrogen and oxygen intermediates and bacterial defenses: unusual adaptations in Mycobacterium tuberculosis
-
Zahrt TC, Deretic V. 2002. Reactive nitrogen and oxygen intermediates and bacterial defenses: unusual adaptations in Mycobacterium tuberculosis. Antioxid. Redox Signal. 4:141-159.
-
(2002)
Antioxid. Redox Signal.
, vol.4
, pp. 141-159
-
-
Zahrt, T.C.1
Deretic, V.2
-
2
-
-
67650164516
-
Mycobacterial survival strategies in the phagosome: defence against host stresses
-
Ehrt S, Schnappinger D. 2009. Mycobacterial survival strategies in the phagosome: defence against host stresses. Cell. Microbiol. 11:1170 -1178.
-
(2009)
Cell. Microbiol.
, vol.11
, pp. 1170-1178
-
-
Ehrt, S.1
Schnappinger, D.2
-
3
-
-
84859645414
-
The response of Mycobacterium tuberculosis to reactive oxygen and nitrogen species
-
doi:10.3389/fmicb.2011.00105
-
Voskuil MI, Bartek IL, Visconti K, Schoolnik GK. 2011. The response of Mycobacterium tuberculosis to reactive oxygen and nitrogen species. Front. Microbiol. 2:105. doi:10.3389/fmicb.2011.00105.
-
(2011)
Front. Microbiol.
, vol.2
, pp. 105
-
-
Voskuil, M.I.1
Bartek, I.L.2
Visconti, K.3
Schoolnik, G.K.4
-
4
-
-
0019371501
-
Killing of Mycobacterium microti by immunologically activated macrophages
-
Walker L, Lowrie DB. 1981. Killing of Mycobacterium microti by immunologically activated macrophages. Nature 293:69 -71.
-
(1981)
Nature
, vol.293
, pp. 69-71
-
-
Walker, L.1
Lowrie, D.B.2
-
5
-
-
0026549480
-
Killing of virulent Mycobacterium tuberculosis by reactive nitrogen intermediates produced by activated murine macrophages
-
Chan J, Xing Y, Magliozzo RS, Bloom BR. 1992. Killing of virulent Mycobacterium tuberculosis by reactive nitrogen intermediates produced by activated murine macrophages. J. Exp. Med. 175:1111-1122.
-
(1992)
J. Exp. Med.
, vol.175
, pp. 1111-1122
-
-
Chan, J.1
Xing, Y.2
Magliozzo, R.S.3
Bloom, B.R.4
-
7
-
-
33646080824
-
Mechanisms of formation, genotoxicity, and mutation of guanine oxidation products
-
Neeley WL, Essigmann JM. 2006. Mechanisms of formation, genotoxicity, and mutation of guanine oxidation products. Chem. Res. Toxicol. 19:491-505.
-
(2006)
Chem. Res. Toxicol.
, vol.19
, pp. 491-505
-
-
Neeley, W.L.1
Essigmann, J.M.2
-
8
-
-
0036628726
-
Biological consequences of free radical-damaged DNA bases
-
Wallace SS. 2002. Biological consequences of free radical-damaged DNA bases. Free Radic. Biol. Med. 33:1-14.
-
(2002)
Free Radic. Biol. Med.
, vol.33
, pp. 1-14
-
-
Wallace, S.S.1
-
10
-
-
80755128334
-
Base excision and nucleotide excision repair pathways in mycobacteria
-
Edinb.
-
Kurthkoti K, Varshney U. 2011. Base excision and nucleotide excision repair pathways in mycobacteria. Tuberculosis (Edinb.) 91:533-543.
-
(2011)
Tuberculosis
, vol.91
, pp. 533-543
-
-
Kurthkoti, K.1
Varshney, U.2
-
11
-
-
84860734902
-
Distinct mechanisms of DNA repair in mycobacteria and their implications in attenuation of the pathogen growth
-
Kurthkoti K, Varshney U. 2012. Distinct mechanisms of DNA repair in mycobacteria and their implications in attenuation of the pathogen growth. Mech. Ageing Dev. 133:138 -146.
-
(2012)
Mech. Ageing Dev.
, vol.133
, pp. 138-146
-
-
Kurthkoti, K.1
Varshney, U.2
-
12
-
-
75149134881
-
The oxidative DNA glycosylases of Mycobacterium tuberculosis exhibit different substrate preferences from their Escherichia coli counterparts
-
Guo Y, Bandaru V, Jaruga P, Zhao X, Burrows CJ, Iwai S, Dizdaroglu M, Bond JP, Wallace SS. 2010. The oxidative DNA glycosylases of Mycobacterium tuberculosis exhibit different substrate preferences from their Escherichia coli counterparts. DNA Repair (Amst.) 9:177-190.
-
(2010)
DNA Repair (Amst.)
, vol.9
, pp. 177-190
-
-
Guo, Y.1
Bandaru, V.2
Jaruga, P.3
Zhao, X.4
Burrows, C.J.5
Iwai, S.6
Dizdaroglu, M.7
Bond, J.P.8
Wallace, S.S.9
-
13
-
-
35748939666
-
A distinct role of formamidopyrimidine DNA glycosylase (MutM) in down-regulation of accumulation of G, C mutations and protection against oxidative stress in mycobacteria
-
Jain R, Kumar P, Varshney U. 2007. A distinct role of formamidopyrimidine DNA glycosylase (MutM) in down-regulation of accumulation of G, C mutations and protection against oxidative stress in mycobacteria. DNA Repair (Amst.) 6:1774 -1785.
-
(2007)
DNA Repair (Amst.)
, vol.6
-
-
Jain, R.1
Kumar, P.2
Varshney, U.3
-
14
-
-
0026701365
-
The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8- dihydro-8-oxoguanine)
-
Michaels ML, Miller JH. 1992. The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8- dihydro-8-oxoguanine). J. Bacteriol. 174:6321- 6325.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6321-6325
-
-
Michaels, M.L.1
Miller, J.H.2
-
15
-
-
0030861915
-
DNA glycosylases in the base excision repair of DNA
-
Krokan HE, Standal R, Slupphaug G. 1997. DNA glycosylases in the base excision repair of DNA. Biochem. J. 325(Pt 1):1-16.
-
(1997)
Biochem. J.
, vol.325
, Issue.PART 1
, pp. 1-16
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
16
-
-
0031692027
-
DNA repair in Mycobacterium tuberculosis What have we learnt from the genome sequence
-
Mizrahi V, Andersen SJ. 1998. DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence? Mol. Microbiol. 29:1331-1339.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 1331-1339
-
-
Mizrahi, V.1
Andersen, S.J.2
-
17
-
-
0242690139
-
The majority of inducible DNA repair genes in Mycobacterium tuberculosis are induced independently of RecA
-
Rand L, Hinds J, Springer B, Sander P, Buxton RS, Davis EO. 2003. The majority of inducible DNA repair genes in Mycobacterium tuberculosis are induced independently of RecA. Mol. Microbiol. 50:1031-1042.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 1031-1042
-
-
Rand, L.1
Hinds, J.2
Springer, B.3
Sander, P.4
Buxton, R.S.5
Davis, E.O.6
-
18
-
-
0026513966
-
MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis
-
Maki H, Sekiguchi M. 1992. MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis. Nature 355:273-275.
-
(1992)
Nature
, vol.355
, pp. 273-275
-
-
Maki, H.1
Sekiguchi, M.2
-
19
-
-
17844405031
-
Multiple enzyme activities of Escherichia coli MutT protein for sanitization of DNA and RNA precursor pools
-
Ito R, Hayakawa H, Sekiguchi M, Ishibashi T. 2005. Multiple enzyme activities of Escherichia coli MutT protein for sanitization of DNA and RNA precursor pools. Biochemistry 44:6670-6674.
-
(2005)
Biochemistry
, vol.44
, pp. 6670-6674
-
-
Ito, R.1
Hayakawa, H.2
Sekiguchi, M.3
Ishibashi, T.4
-
20
-
-
0030879766
-
Counteraction by MutT protein of transcriptional errors caused by oxidative damage
-
Taddei F, Hayakawa H, Bouton M, Cirinesi A, Matic I, Sekiguchi M, Radman M. 1997. Counteraction by MutT protein of transcriptional errors caused by oxidative damage. Science 278:128 -130.
-
(1997)
Science
, vol.278
, pp. 128-130
-
-
Taddei, F.1
Hayakawa, H.2
Bouton, M.3
Cirinesi, A.4
Matic, I.5
Sekiguchi, M.6
Radman, M.7
-
21
-
-
9144272293
-
Increased A:T → C:G mutations in the mutT strain upon 8-hydroxy-dGTP treatment: direct evidence for MutT involvement in the prevention of mutations by oxidized dGTP
-
Kamiya H, Ishiguro C, Harashima H. 2004. Increased A:T → C:G mutations in the mutT strain upon 8-hydroxy-dGTP treatment: direct evidence for MutT involvement in the prevention of mutations by oxidized dGTP. J. Biochem. 136:359 -362.
-
(2004)
J. Biochem.
, vol.136
, pp. 359-362
-
-
Kamiya, H.1
Ishiguro, C.2
Harashima, H.3
-
22
-
-
30744470374
-
The Nudix hydrolase superfamily
-
McLennan AG. 2006. The Nudix hydrolase superfamily. Cell. Mol. Life Sci. 63:123-143.
-
(2006)
Cell. Mol. Life Sci.
, vol.63
, pp. 123-143
-
-
McLennan, A.G.1
-
23
-
-
33646011231
-
Identification of Nudix hydrolase family members with an antimutator role in Mycobacterium tuberculosis and Mycobacterium smegmatis
-
Dos Vultos T, Blazquez J, Rauzier J, Matic I, Gicquel B. 2006. Identification of Nudix hydrolase family members with an antimutator role in Mycobacterium tuberculosis and Mycobacterium smegmatis. J. Bacteriol. 188:3159 -3161.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3159-3161
-
-
Dos Vultos, T.1
Blazquez, J.2
Rauzier, J.3
Matic, I.4
Gicquel, B.5
-
24
-
-
60749117447
-
Making sense of a missense mutation: characterization of MutT2, a Nudix hydrolase from Mycobacterium tuberculosis, and the G58R mutant encoded in W-Beijing strains of M
-
Moreland NJ, Charlier C, Dingley AJ, Baker EN, Lott JS. 2009. Making sense of a missense mutation: characterization of MutT2, a Nudix hydrolase from Mycobacterium tuberculosis, and the G58R mutant encoded in W-Beijing strains of M. tuberculosis. Biochemistry 48:699 -708.
-
(2009)
tuberculosis. Biochemistry
, vol.48
, pp. 699-708
-
-
Moreland, N.J.1
Charlier, C.2
Dingley, A.J.3
Baker, E.N.4
Lott, J.S.5
-
25
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner FR, Plunkett G, III, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453- 1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
26
-
-
0034705144
-
An efficient recombination system for chromosome engineering in Escherichia coli
-
U.S.A.
-
Yu D, Ellis HM, Lee EC, Jenkins NA, Copeland NG, Court DL. 2000. An efficient recombination system for chromosome engineering in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 97:5978 -5983.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 5978-5983
-
-
Yu, D.1
Ellis, H.M.2
Lee, E.C.3
Jenkins, N.A.4
Copeland, N.G.5
Court, D.L.6
-
27
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
doi:10.1038/msb4100050
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. doi:10.1038/msb4100050.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 20060008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
28
-
-
0345549815
-
A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions
-
U.S.A.
-
Cupples CG, Miller JH. 1989. A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions. Proc. Natl. Acad. Sci. U. S. A. 86:5345-5349.
-
(1989)
Proc. Natl. Acad. Sci.
, vol.86
, pp. 5345-5349
-
-
Cupples, C.G.1
Miller, J.H.2
-
29
-
-
0017390556
-
A rapid, sensitive, and versatile assay for protein using Coomassie brilliant blue G250
-
Sedmak JJ, Grossberg SE. 1977. A rapid, sensitive, and versatile assay for protein using Coomassie brilliant blue G250. Anal. Biochem. 79:544 -552.
-
(1977)
Anal. Biochem.
, vol.79
, pp. 544-552
-
-
Sedmak, J.J.1
Grossberg, S.E.2
-
30
-
-
0038449261
-
A novel mechanism for preventing mutations caused by oxidation of guanine nucleotides
-
Ishibashi T, Hayakawa H, Sekiguchi M. 2003. A novel mechanism for preventing mutations caused by oxidation of guanine nucleotides. EMBO Rep. 4:479-483.
-
(2003)
EMBO Rep.
, vol.4
, pp. 479-483
-
-
Ishibashi, T.1
Hayakawa, H.2
Sekiguchi, M.3
-
31
-
-
21644442775
-
Comprehensive analysis of cytosolic Nudix hydrolases in Arabidopsis thaliana
-
Ogawa T, Ueda Y, Yoshimura K, Shigeoka S. 2005. Comprehensive analysis of cytosolic Nudix hydrolases in Arabidopsis thaliana. J. Biol. Chem. 280:25277-25283.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 25277-25283
-
-
Ogawa, T.1
Ueda, Y.2
Yoshimura, K.3
Shigeoka, S.4
-
32
-
-
84859958491
-
Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics
-
Foti JJ, Devadoss B, Winkler JA, Collins JJ, Walker GC. 2012. Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics. Science 336:315-319.
-
(2012)
Science
, vol.336
, pp. 315-319
-
-
Foti, J.J.1
Devadoss, B.2
Winkler, J.A.3
Collins, J.J.4
Walker, G.C.5
-
33
-
-
83355173923
-
Comparative analysis of mycobacterial NADH pyrophosphatase isoforms reveals a novel mechanism for isoniazid and ethionamide inactivation
-
Wang XD, Gu J, Wang T, Bi LJ, Zhang ZP, Cui ZQ, Wei HP, Deng JY, Zhang XE. 2011. Comparative analysis of mycobacterial NADH pyrophosphatase isoforms reveals a novel mechanism for isoniazid and ethionamide inactivation. Mol. Microbiol. 82:1375-1391.
-
(2011)
Mol. Microbiol.
, vol.82
, pp. 1375-1391
-
-
Wang, X.D.1
Gu, J.2
Wang, T.3
Bi, L.J.4
Zhang, Z.P.5
Cui, Z.Q.6
Wei, H.P.7
Deng, J.Y.8
Zhang, X.E.9
-
34
-
-
0035937181
-
Orf135 from Escherichia coli is a Nudix hydrolase specific for CTP, dCTP, and 5-methyl-dCTP
-
O'Handley SF, Dunn CA, Bessman MJ. 2001. Orf135 from Escherichia coli is a Nudix hydrolase specific for CTP, dCTP, and 5-methyl-dCTP. J. Biol. Chem. 276:5421-5426.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 5421-5426
-
-
O'Handley, S.F.1
Dunn, C.A.2
Bessman, M.J.3
-
35
-
-
84859423014
-
Insights into substrate recognition by the Escherichia coli Orf135 protein through its solution structure
-
Kawasaki K, Kanaba T, Yoneyama M, Murata-Kamiya N, Kojima C, Ito Y, Kamiya H, Mishima M. 2012. Insights into substrate recognition by the Escherichia coli Orf135 protein through its solution structure. Biochem. Biophys. Res. Commun. 420:263-268.
-
(2012)
Biochem. Biophys. Res. Commun.
, vol.420
, pp. 263-268
-
-
Kawasaki, K.1
Kanaba, T.2
Yoneyama, M.3
Murata-kamiya, N.4
Kojima, C.5
Ito, Y.6
Kamiya, H.7
Mishima, M.8
-
36
-
-
4544279241
-
Important amino acids in the phosphohydrolase module of Escherichia coli Orf135
-
Kamiya H, Iida E, Harashima H. 2004. Important amino acids in the phosphohydrolase module of Escherichia coli Orf135. Biochem. Biophys. Res. Commun. 323:1063-1068.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.323
, pp. 1063-1068
-
-
Kamiya, H.1
Iida, E.2
Harashima, H.3
-
37
-
-
17144391104
-
Amino acid residues involved in substrate recognition of the Escherichia coli Orf135 protein
-
Iida E, Satou K, Mishima M, Kojima C, Harashima H, Kamiya H. 2005. Amino acid residues involved in substrate recognition of the Escherichia coli Orf135 protein. Biochemistry 44:5683-5689.
-
(2005)
Biochemistry
, vol.44
, pp. 5683-5689
-
-
Iida, E.1
Satou, K.2
Mishima, M.3
Kojima, C.4
Harashima, H.5
Kamiya, H.6
|