The dielectric response to photoexcitation of GFP: A molecular dynamics study

Chemical Physics Letters

Volumn 564, Issue , 2013, Pages 78-82

  Xu, Yao ^a   Gnanasekaran, Ramachandran ^a   Leitner, David M ^a  

^a UNIVERSITY OF NEVADA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AB INITIO CALCULATIONS; DIELECTRIC RESPONSE; FORCE FIELDS; GREEN FLUORESCENT PROTEIN; HYDRATION LAYERS; MOLECULAR SIMULATIONS;

HYDROGEN BONDS; MOLECULAR DYNAMICS; PHOTOEXCITATION;

CHROMOPHORES;

EID: 84875214423     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2013.02.002     Document Type: Article

References (46)

1. R. Jimenez, G.R. Fleming, P.V. Kumar, and M. Maroncelli Nature 369 1994 471
2. D. Xu, C. Martin, and K. Schulten Biophys. J. 70 1996 453
3. P. Abbyad, W. Childs, X. Shi, and S.G. Boxer Proc. Natl. Acad. Sci. USA 104 2007 20189
4. P. Abbyad, X. Shi, W. Childs, T.B. McAnaney, B.E. Cohen, and S.G. Boxer J. Phys. Chem. B 111 2007 8269
5. B. Bagchi Chem. Rev. 105 2005 3197
6. L.Z. Samir Kumar Pal, and A.H. Zewail Proc. Natl. Acad. Sci. USA 100 2003 8113
7. K.E. Furse, and S.A. Corcelli J. Am. Chem. Soc. 130 2008 13103
8. K.E. Furse, and S.A. Corcelli J. Phys. Chem. Lett. 1 2010 1813
9. A.A. Golosov, and M. Karplus J. Phys. Chem. B 111 2007 1482
10. A A H Tanping Li, J. Sherwin, and J. Singer J. Phys. Chem. B 112 2008 16121
11. B. Halle, and L. Nilsson J. Phys. Chem. Lett. 113 2009 8210
12. S. Ebbinghaus Proc. Natl. Acad. Sci. USA 104 2007 20749
13. R. Gnanasekaran, Y. Xu, and D.M. Leitner J. Phys. Chem. B 114 2010 16989
14. U. Heugen Proc. Natl. Acad. Sci. USA 103 2006 12301
15. D.M. Leitner, M. Havenith, and M. Gruebele Int. Rev. Phys. Chem. 25 2006 553
16. X. Yu, J. Park, and D.M. Leitner J. Phys. Chem. B 107 2003 12820
17. S.J. Kim, B. Born, M. Havenith, and M. Gruebele Angew. Chem. Int. Ed. 120 2008 6486
18. D.J. Tobias, N. Sengupta, and M. Tarek D.M. Leitner, J.E. Straub, Proteins: Energy Heat and Signal Flowing 2009 Taylor and Francis New York p. 361
19. D.N. LeBard, and D.V. Matyushov J. Phys. Chem. B 114 2010 9246
20. H. Frauenfelder, P.W. Fenimore, G. Chan, and B.H. McMahon Proc. Natl. Acad. Sci. USA 103 2006 15469
21. K. Meister Proc. Natl. Acad. Sci. USA 110 2013 1617
22. D.R. Martin, and D.V. Matyushov J. Phys. Chem. B 116 2012 10294
23. L. Hua, X. Huang, R. Zhou, and B.J. Berne J. Phys. Chem. B 110 2006 3704
24. S.K. Pal, J. Peon, and A.H. Zewail Proc. Natl. Acad. Sci. USA 99 2002 1763
25. J. Peon, S.K. Pal, and A.H. Zewail Proc. Natl. Acad. Sci. USA 99 2002 10964
26. B. Halle, and L. Nilsson J. Phys. Chem. B 113 2009 8210
27. L. Nilsson, and B. Halle Proc. Natl. Acad. Sci. USA 102 2005 13867
28. S. Pal, P.K. Maiti, B. Bagchi, and J.T. Hynes J. Phys. Chem. B 110 2006 26396
29. M. Chattoraj, B.A. King, G.U. Bublitz, and S.G. Boxer Proc. Natl. Acad. Sci. USA 93 1996 8362
30. C. Fang, R.R. Frontiera, R. Tran, and R.A. Mathies Nature 462 2009 200
31. J.A.D MacKerell J. Phys. Chem. B 102 1998 3586
32. W.L. Jorgensen, J. Chandrasekhar, J.D. Madura, R.W. Impey, and M.L. Klein J. Chem. Phys. 79 1983 926
33. E.J. Sorin, and V.J. Pande Biophys. J. 88 2005 2472
34. A.J. DePaul, E.J. Thompson, S.S. Patel, K. Haldeman, and E.J. Sorin Nucleic Acids Res. 38 2010 4856
35. M.J. Frischet et al., Gaussian Inc., Wallingford, CT, 2004.
36. B. Hess, D.v.d. Spoel, and E. Lindahl J. Chem. Theory Comput. 4 2008 435
37. A. Sinicropi, T. Andruniow, N. Ferré, R. Basosi, and M. Olivucci J. Am. Chem. Soc. 127 2005 11534
38. A.H. Steindal, J.M.H. Olsen, K. Ruud, L. Frediani, and J. Kongsted Phys. Chem. Chem. Phys. 14 2012 5440
39. A. Luzar, and D. Chandler Nature 379 1996 55
40. B.M. Ladanyi S.D. Schwartz, Theoretical Methods in Condensed Phase Chemistry 2000 Kluwer Academic Publishers Amsterdam p. 207
41. W.H. Thompson Ann. Rev. Phys. Chem. 62 2011 599
42. B.B. Laird, and W.H. Thompson J. Chem. Phys. 135 2011 084511
43. P.A. Pieniazek, Y. Lin, J. Chowdhary, B.M. Ladanyi, and J.L. Skinner J. Phys. Chem. B 113 2009 15017
44. O. Markovitch, and N. Agmon J. Chem. Phys. 129 2008 084505
45. A. Jha, K. Ishii, J.B. Udgaonkar, T. Tahara, and G. Krishnamoorthy Biochemistry 50 2011 397
46. A.D. William Humphrey, and K. Schulten J. Mol. Graphics 14 1996 33