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Volumn 14, Issue 3, 2013, Pages 5694-5711

Development and validation of single nucleotide polymorphisms (SNPs) markers from two transcriptome 454-runs of turbot (Scophthalmus maximus) using high-throughput genotyping

Author keywords

EST database; High throughput genotyping; Non synonymous substitution; Scophthalmus maximus; SNP validation; Turbot

Indexed keywords

TRANSCRIPTOME;

EID: 84875057168     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms14035694     Document Type: Article
Times cited : (33)

References (67)
  • 2
    • 0036433712 scopus 로고    scopus 로고
    • Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes
    • Bouza, C.; Presa, P.; Castro, J.; Sanchez, L.; Martinez, P. Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes. Can. J. Fish. Aquat. Sci. 2002, 59, 1460-1473.
    • (2002) Can. J. Fish. Aquat. Sci , vol.59 , pp. 1460-1473
    • Bouza, C.1    Presa, P.2    Castro, J.3    Sanchez, L.4    Martinez, P.5
  • 3
    • 1642564106 scopus 로고    scopus 로고
    • Gynogenesis assessment using microsatellite genetic markers in turbot (Scophthalmus maximus)
    • Castro, J.; Bouza, C.; Sanchez, L.; Cal, R.M.; Piferrer, F.; Martinez, P. Gynogenesis assessment using microsatellite genetic markers in turbot (Scophthalmus maximus). Mar. Biotechnol. 2003, 5, 584-592.
    • (2003) Mar. Biotechnol , vol.5 , pp. 584-592
    • Castro, J.1    Bouza, C.2    Sanchez, L.3    Cal, R.M.4    Piferrer, F.5    Martinez, P.6
  • 4
    • 9744226549 scopus 로고    scopus 로고
    • Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci
    • Castro, J.; Bouza, C.; Presa, P.; Pino-Querido, A.; Riaza, A.; Ferreiro, I.; Sanchez, L.; Martinez, P. Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci. Aquaculture 2004, 242, 119-135.
    • (2004) Aquaculture , vol.242 , pp. 119-135
    • Castro, J.1    Bouza, C.2    Presa, P.3    Pino-Querido, A.4    Riaza, A.5    Ferreiro, I.6    Sanchez, L.7    Martinez, P.8
  • 8
    • 78651306534 scopus 로고    scopus 로고
    • Variation in anonymous and EST-microsatellites suggests adaptive population divergence in turbot
    • Vilas, R.; Bouza, C.; Vera, M.; Millan, A.; Martinez, P. Variation in anonymous and EST-microsatellites suggests adaptive population divergence in turbot. Mar. Ecology-Prog. Ser. 2010, 420, 231-239.
    • (2010) Mar. Ecology-Prog. Ser , vol.420 , pp. 231-239
    • Vilas, R.1    Bouza, C.2    Vera, M.3    Millan, A.4    Martinez, P.5
  • 10
    • 84862106066 scopus 로고    scopus 로고
    • High-Throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes
    • Pereiro, P.; Balseiro, P.; Romero, A.; Dios, S.; Forn-Cuni, G.; Fuste, B.; Planas, J.V.; Beltran, S.; Novoa, B.; Figueras, A. High-Throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. PLoS One 2012, 7, e35369.
    • (2012) PLoS One , vol.7
    • Pereiro, P.1    Balseiro, P.2    Romero, A.3    Dios, S.4    Forn-Cuni, G.5    Fuste, B.6    Planas, J.V.7    Beltran, S.8    Novoa, B.9    Figueras, A.10
  • 11
    • 84874939737 scopus 로고    scopus 로고
    • A combined strategy involving Sanger and 454 pyrosequencing increases genomic resources to aid in the management of reproduction; disease control and genetic selection in the turbot (Scophthalmus maximus)
    • submitted
    • Ribas, L.; Pardo, B.G.; Fernandez, C.; Alvarez-Dios, J.A.; Gomez-Tato, A.; Quiroga, M.I.; Planas, J.; Sitja-Bobadilla, A.; Martinez, P.; Piferrer, F. A combined strategy involving Sanger and 454 pyrosequencing increases genomic resources to aid in the management of reproduction; disease control and genetic selection in the turbot (Scophthalmus maximus). BMC Genomics 2013, submitted.
    • (2013) BMC Genomics
    • Ribas, L.1    Pardo, B.G.2    Fernandez, C.3    Alvarez-Dios, J.A.4    Gomez-Tato, A.5    Quiroga, M.I.6    Planas, J.7    Sitja-Bobadilla, A.8    Martinez, P.9    Piferrer, F.10
  • 12
    • 72849144434 scopus 로고    scopus 로고
    • Applications of next-generation sequencing: Sequencing technologies-The next generation
    • Metzker, M.L. Applications of next-generation sequencing: Sequencing technologies-The next generation. Nat. Rev. Genetics 2010, 11, 31-46.
    • (2010) Nat. Rev. Genetics , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 13
    • 64149123778 scopus 로고    scopus 로고
    • Next-Generation sequencing: From basic research to diagnostics
    • Voelkerding, K.V.; Dames, S.A.; Durtschi, J.D. Next-Generation sequencing: From basic research to diagnostics. Clin. Chem. 2009, 55, 641-658.
    • (2009) Clin. Chem , vol.55 , pp. 641-658
    • Voelkerding, K.V.1    Dames, S.A.2    Durtschi, J.D.3
  • 15
    • 0031599976 scopus 로고    scopus 로고
    • Expressed sequence tags-ESTablishing bridges between genomes
    • Marra, M.A.; Hillier, L.; Waterston, R.H. Expressed sequence tags-ESTablishing bridges between genomes. Trends Genetics 1998, 14, 4-7.
    • (1998) Trends Genetics , vol.14 , pp. 4-7
    • Marra, M.A.1    Hillier, L.2    Waterston, R.H.3
  • 16
    • 0035976794 scopus 로고    scopus 로고
    • Microsatellite-containing genes from the channel catfish brain: Evidence of trinucleotide repeat expansion in the coding region of nucleotide excision repair gene RAD23B
    • Liu, Z.J.; Li, P.; Kocabas, A.; Karsi, A.; Ju, Z.L. Microsatellite-containing genes from the channel catfish brain: Evidence of trinucleotide repeat expansion in the coding region of nucleotide excision repair gene RAD23B. Biochem. Biophys. Res. Commu. 2001, 289, 317-324.
    • (2001) Biochem. Biophys. Res. Commu , vol.289 , pp. 317-324
    • Liu, Z.J.1    Li, P.2    Kocabas, A.3    Karsi, A.4    Ju, Z.L.5
  • 17
    • 4344695759 scopus 로고    scopus 로고
    • Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus)
    • Serapion, J.; Kucuktas, H.; Feng, J.A.; Liu, Z.J. Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus). Mar. Biotechnol. 2004, 6, 364-377.
    • (2004) Mar. Biotechnol , vol.6 , pp. 364-377
    • Serapion, J.1    Kucuktas, H.2    Feng, J.A.3    Liu, Z.J.4
  • 18
    • 0344719474 scopus 로고    scopus 로고
    • Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis
    • He, C.; Chen, L.; Simmons, M.; Li, P.; Kim, S.; Liu, Z.J. Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis. Anim. Genetics 2003, 34, 445-448.
    • (2003) Anim. Genetics , vol.34 , pp. 445-448
    • He, C.1    Chen, L.2    Simmons, M.3    Li, P.4    Kim, S.5    Liu, Z.J.6
  • 22
    • 55149106584 scopus 로고    scopus 로고
    • Characterization of single nucleotide polymorphism markers for eelgrass (Zostera marina)
    • Ferber, S.; Reusch, T.B.H.; Stam, W.T.; Olsen, J.L. Characterization of single nucleotide polymorphism markers for eelgrass (Zostera marina). Mol. Ecol. Resour. 2008, 8, 1429-1435.
    • (2008) Mol. Ecol. Resour , vol.8 , pp. 1429-1435
    • Ferber, S.1    Reusch, T.B.H.2    Stam, W.T.3    Olsen, J.L.4
  • 24
    • 35348847064 scopus 로고    scopus 로고
    • SNP genotyping: Technologies and biomedical applications
    • Kim, S.; Misra, A. SNP genotyping: Technologies and biomedical applications. Ann. Rev. Biomed. Eng. 2007, 9, 289-320.
    • (2007) Ann. Rev. Biomed. Eng , vol.9 , pp. 289-320
    • Kim, S.1    Misra, A.2
  • 25
    • 44049108937 scopus 로고    scopus 로고
    • Discovery and evaluation of single nucleotide polymorphisms (SNPs) for Haliotis midae: A targeted EST approach
    • Bester, A.E.; Roodt-Wilding, R.; Whitaker, H.A. Discovery and evaluation of single nucleotide polymorphisms (SNPs) for Haliotis midae: A targeted EST approach. Anim. Genetics 2008, 39, 321-324.
    • (2008) Anim. Genetics , vol.39 , pp. 321-324
    • Bester, A.E.1    Roodt-Wilding, R.2    Whitaker, H.A.3
  • 27
    • 0037381234 scopus 로고    scopus 로고
    • Quality and completeness of SNP databases
    • Reich, D.E.; Gabriel, S.B.; Altshuler, D. Quality and completeness of SNP databases. Nat. Genetics 2003, 33, 457-458.
    • (2003) Nat. Genetics , vol.33 , pp. 457-458
    • Reich, D.E.1    Gabriel, S.B.2    Altshuler, D.3
  • 28
    • 0037687926 scopus 로고    scopus 로고
    • The utility of single nucleotide polymorphisms in inferences of population history
    • Brumfield, R.T.; Beerli, P.; Nickerson, D.A.; Edwards, S.V. The utility of single nucleotide polymorphisms in inferences of population history. Trends Ecol. Evol. 2003, 18, 249-256.
    • (2003) Trends Ecol. Evol , vol.18 , pp. 249-256
    • Brumfield, R.T.1    Beerli, P.2    Nickerson, D.A.3    Edwards, S.V.4
  • 32
    • 34047264454 scopus 로고    scopus 로고
    • An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences
    • Hayes, B.; Laerdahl, J.K.; Lien, S.; Moen, T.; Berg, P.; Hindar, K.; Davidson, W.S.; Koop, B.F.; Adzhubei, A.; Hoyheim, B. An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences. Aquaculture 2007, 265, 82-90.
    • (2007) Aquaculture , vol.265 , pp. 82-90
    • Hayes, B.1    Laerdahl, J.K.2    Lien, S.3    Moen, T.4    Berg, P.5    Hindar, K.6    Davidson, W.S.7    Koop, B.F.8    Adzhubei, A.9    Hoyheim, B.10
  • 34
    • 70249102114 scopus 로고    scopus 로고
    • Development of single nucleotide polymorphism markers for Atlantic cod (Gadus morhua) using expressed sequences
    • Hubert, S.; Bussey, J.T.; Higgins, B.; Curtis, B.A.; Bowman, S. Development of single nucleotide polymorphism markers for Atlantic cod (Gadus morhua) using expressed sequences. Aquaculture 2009, 296, 7-14.
    • (2009) Aquaculture , vol.296 , pp. 7-14
    • Hubert, S.1    Bussey, J.T.2    Higgins, B.3    Curtis, B.A.4    Bowman, S.5
  • 35
    • 77951241851 scopus 로고    scopus 로고
    • Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)
    • Hubert, S.; Higgins, B.; Borza, T.; Bowman, S. Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua). BMC Genomics 2010, 11, 191.
    • (2010) BMC Genomics , vol.11 , pp. 191
    • Hubert, S.1    Higgins, B.2    Borza, T.3    Bowman, S.4
  • 36
    • 36749035283 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas
    • Sauvage, C.; Bierne, N.; Lapegue, S.; Boudry, P. Single nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas. Gene 2007, 406, 13-22.
    • (2007) Gene , vol.406 , pp. 13-22
    • Sauvage, C.1    Bierne, N.2    Lapegue, S.3    Boudry, P.4
  • 37
    • 77957099698 scopus 로고    scopus 로고
    • Characterization of single-nucleotide polymorphism markers in the Mediterranean mussel; Mytilus galloprovincialis
    • Vera, M.; Pardo, B.G.; Pino-Querido, A.; Alvarez-Dios, J.A.; Fuentes, J.; Martinez, P. Characterization of single-nucleotide polymorphism markers in the Mediterranean mussel; Mytilus galloprovincialis. Aquac. Res. 2010, 41, e568-e575.
    • (2010) Aquac. Res , vol.41
    • Vera, M.1    Pardo, B.G.2    Pino-Querido, A.3    Alvarez-Dios, J.A.4    Fuentes, J.5    Martinez, P.6
  • 38
    • 77949492289 scopus 로고    scopus 로고
    • Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing
    • Zhang, L.S.; Guo, X.M. Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing. Aquaculture 2010, 302, 124-129.
    • (2010) Aquaculture , vol.302 , pp. 124-129
    • Zhang, L.S.1    Guo, X.M.2
  • 40
    • 77951054288 scopus 로고    scopus 로고
    • Mining ESTs to determine the usefulness of SNPs across shrimp species
    • Gorbach, D.M.; Hu, Z.L.; Du, Z.Q.; Rothschild, M.F. Mining ESTs to determine the usefulness of SNPs across shrimp species. Anim. Biotechnol. 2010, 21, 100-103.
    • (2010) Anim. Biotechnol , vol.21 , pp. 100-103
    • Gorbach, D.M.1    Hu, Z.L.2    Du, Z.Q.3    Rothschild, M.F.4
  • 42
    • 84862507584 scopus 로고    scopus 로고
    • Development and characterization of new single nucleotide polymorphism markers from expressed sequence tags in common carp (Cyprinus carpio)
    • Zhu, C.; Cheng, L.; Tong, J.; Yu, X. Development and characterization of new single nucleotide polymorphism markers from expressed sequence tags in common carp (Cyprinus carpio). Int. J. Mol. Sci. 2012, 13, 7343-7353.
    • (2012) Int. J. Mol. Sci , vol.13 , pp. 7343-7353
    • Zhu, C.1    Cheng, L.2    Tong, J.3    Yu, X.4
  • 44
    • 84865284083 scopus 로고    scopus 로고
    • Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cutthroat trout and genetic identification of related taxa
    • Campbell, N.R.; Amish, S.J.; Pritchard, V.L.; McKelvey, K.S.; Young, M.K.; Schwartz, M.K.; Garza, J.C.; Luikart, G.; Narum, S.R. Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cutthroat trout and genetic identification of related taxa. Mol. Ecol. Resour. 2012, 12, 942-949.
    • (2012) Mol. Ecol. Resour , vol.12 , pp. 942-949
    • Campbell, N.R.1    Amish, S.J.2    Pritchard, V.L.3    McKelvey, K.S.4    Young, M.K.5    Schwartz, M.K.6    Garza, J.C.7    Luikart, G.8    Narum, S.R.9
  • 45
    • 25444458848 scopus 로고    scopus 로고
    • AutoFACT: An (Auto)under-barmatic (F)under-barunctional (A)under-barnnotation and (C)under-barlassification (T)under-barool
    • Koski, L.B.; Gray, M.W.; Lang, B.F.; Burger, G. AutoFACT: An (Auto)under-barmatic (F)under-barunctional (A)under-barnnotation and (C)under-barlassification (T)under-barool. BMC Bioinforma. 2005, 6, 151.
    • (2005) BMC Bioinforma , vol.6 , pp. 151
    • Koski, L.B.1    Gray, M.W.2    Lang, B.F.3    Burger, G.4
  • 46
    • 0043207446 scopus 로고    scopus 로고
    • A double-screening method to identify reliablecandidate non-synonymous SNPs from chicken EST data
    • Kim, H.; Schmidt, C.J.; Decker, K.S.; Emara, M.G. A double-screening method to identify reliablecandidate non-synonymous SNPs from chicken EST data. Anim. Genetics 2003, 34, 249-254.
    • (2003) Anim. Genetics , vol.34 , pp. 249-254
    • Kim, H.1    Schmidt, C.J.2    Decker, K.S.3    Emara, M.G.4
  • 47
    • 33846840758 scopus 로고    scopus 로고
    • Identification and analysis of single nucleotide polymorphisms (SNPs) in the mosquito Anopheles funestus; malaria vector
    • Wondji, C.S.; Hemingway, J.; Ranson, H. Identification and analysis of single nucleotide polymorphisms (SNPs) in the mosquito Anopheles funestus; malaria vector. BMC Genomics 2007, 8, 5.
    • (2007) BMC Genomics , vol.8 , pp. 5
    • Wondji, C.S.1    Hemingway, J.2    Ranson, H.3
  • 48
    • 3042615882 scopus 로고    scopus 로고
    • Using the miraEST assembler for reliable and automated mRNA transcript assembly and dtection in sequenced ESTs
    • Chevreux, B.; Pfisterer, T.; Drescher, B.; Driesel, A.; Müller, W.E.G.; Wetter, T.; Suhai, S. Using the miraEST assembler for reliable and automated mRNA transcript assembly and dtection in sequenced ESTs. Genome Res. 2004, 14, 1147-1159.
    • (2004) Genome Res , vol.14 , pp. 1147-1159
    • Chevreux, B.1    Pfisterer, T.2    Drescher, B.3    Driesel, A.4    Müller, W.E.G.5    Wetter, T.6    Suhai, S.7
  • 49
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang, X.; Madan, A. CAP3: A DNA sequence assembly program. Genome Res. 1999, 9, 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 51
    • 33750305245 scopus 로고    scopus 로고
    • QualitySNP: A pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species
    • Tang, J.; Vosman, B.; Voorrips, R.E.; Linden, C.G.; van der Linden, C.G.; Leunissen, J.A.M. QualitySNP: A pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. BMC Bioinforma. 2006, 7, 438.
    • (2006) BMC Bioinforma , vol.7 , pp. 438
    • Tang, J.1    Vosman, B.2    Voorrips, R.E.3    Linden, C.G.4    van der Linden, C.G.5    Leunissen, J.A.M.6
  • 52
    • 84875072649 scopus 로고    scopus 로고
    • MySQL Home Page, Available online, accessed on 1 July
    • MySQL Home Page. Available online: http://www.mysql.com (accessed on 1 July 2009).
    • (2009)
  • 53
    • 84875073730 scopus 로고    scopus 로고
    • M-View Home Page. Available online, accessed on 1 July
    • M-View Home Page. Available online: http://bio-mview.sourceforge.net (accessed on 1 July 2009).
    • (2009)
  • 54
    • 84875082990 scopus 로고    scopus 로고
    • BLAST Home Page. Available online, accessed on 2 November
    • BLAST Home Page. Available online: http://blast.ncbi.nlm.nih.gov/Blast.cgi? (accessed on 2 November 2012).
    • (2012)
  • 56
    • 0035895258 scopus 로고    scopus 로고
    • High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Buetow, K.H.; Edmonson, M.; MacDonald, R.; Clifford, R.; Yip, P.; Kelley, J.; Little, D.P.; Strausberg R, Koester, H, Cantor C.R, et al, High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Proc. Natl. Acad. Sci. USA 2001, 98, 581-584.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 581-584
    • Buetow, K.H.1    Edmonson, M.2    Macdonald, R.3    Clifford, R.4    Yip, P.5    Kelley, J.6    Little, D.P.7    Strausberg, R.8    Koester, H.9    Cantor, C.R.10
  • 57
    • 73449102901 scopus 로고    scopus 로고
    • Qualitative and quantitative genotyping using single base primer extension coupled with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MassARRAY)
    • Oeth, P.; del Mistro, G.; Marnellos, G.; Shi, T.; van den Boom, D. Qualitative and quantitative genotyping using single base primer extension coupled with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MassARRAY). Methods Mol. Biol. 2009, 578, 307-343.
    • (2009) Methods Mol. Biol , vol.578 , pp. 307-343
    • Oeth, P.1    del Mistro, G.2    Marnellos, G.3    Shi, T.4    van den Boom, D.5
  • 59
    • 0000262278 scopus 로고
    • GENEPOP (Version 1.2)-Population genetics software for exact tests and ecumenicism
    • Raymond, M.; Rousset, F. GENEPOP (Version 1.2)-Population genetics software for exact tests and ecumenicism. J. Hered. 1995, 86, 248-249.
    • (1995) J. Hered , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 60
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux
    • Rousset, F. GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Resour. 2008, 8, 103-106.
    • (2008) Mol. Ecol. Resour , vol.8 , pp. 103-106
    • Rousset, F.1
  • 61
    • 0023552085 scopus 로고
    • An exact test for Hardy-Weinberg and multiple alleles
    • Louis, E.J.; Dempster, E.R. An exact test for Hardy-Weinberg and multiple alleles. Biometrics 1987, 43, 805-811.
    • (1987) Biometrics , vol.43 , pp. 805-811
    • Louis, E.J.1    Dempster, E.R.2
  • 62
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice, W.R. Analyzing tables of statistical tests. Evolution 1989, 43, 223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 63
    • 84875064792 scopus 로고    scopus 로고
    • ORF Finder Home Page. Available online, accessed on 8 November
    • ORF Finder Home Page. Available online: http://www.ncbi.nlm.nih.gov/gorf/gorf.html (accessed on 8 November 2012).
    • (2012)
  • 64
    • 0027968068 scopus 로고
    • CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting; position-specific gap penalties and weight matrix choice
    • Thompson, J.D.; Higgins, D.G.; Gibson, T.J. CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting; position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 1994, 22, 4673-4680.
    • (1994) Nucl. Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 65
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program fro Windows 95/98/NT
    • Hall, T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program fro Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41, 95-98.
    • (1999) Nucl. Acids Symp. Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 66
    • 84875063165 scopus 로고    scopus 로고
    • QuickGO Home Page. Available online, accessed on 15 October
    • QuickGO Home Page. Available online: http://www.ebi.ac.uk/QuickGO/ (accessed on 15 October 2012).
    • (2012)
  • 67
    • 84875084156 scopus 로고    scopus 로고
    • AmiGO Home Page. Available online, accessed on 16 October
    • AmiGO Home Page. Available online: http://amigo.geneontology.org/cgi-bin/amigo/go.cgi (accessed on 16 October 2012).
    • (2012)


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