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Volumn 9, Issue , 2008, Pages

Quality assessment parameters for EST-derived SNPs from catfish

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CATFISH; CONTIG MAPPING; EXON; EXPRESSED SEQUENCE TAG; GENE FREQUENCY; GENE SEQUENCE; GENOTYPE; INTRON; NONHUMAN; POLYMERASE CHAIN REACTION; QUALITY CONTROL; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; DNA SEQUENCE; GENETICS;

EID: 54349120289     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-450     Document Type: Article
Times cited : (91)

References (44)
  • 1
    • 34447286178 scopus 로고    scopus 로고
    • From QTL to QTN identification in livestock - Winning by points rather than knock-out: A review
    • 17697134
    • Ron M Weller JI From QTL to QTN identification in livestock - winning by points rather than knock-out: A review Anim Genet 2007, 38(5):429-439. 17697134
    • (2007) Anim Genet , vol.38 , Issue.5 , pp. 429-439
    • Ron, M.1    Weller, J.I.2
  • 2
    • 1842787909 scopus 로고    scopus 로고
    • Porcine genomics delivers new tools and results: This little piggy did more than just go to market
    • 15125061
    • Rothschild MF Porcine genomics delivers new tools and results: This little piggy did more than just go to market Genet Res 2004, 83(1):1-6. 15125061
    • (2004) Genet Res , vol.83 , Issue.1 , pp. 1-6
    • Rothschild, M.F.1
  • 3
    • 0033031747 scopus 로고    scopus 로고
    • Informativity assessment for biallelic single nucleotide polymorphisms
    • 10435431
    • Krawczak M Informativity assessment for biallelic single nucleotide polymorphisms Electrophoresis 1999, 20(8):1676-1681. 10435431
    • (1999) Electrophoresis , vol.20 , Issue.8 , pp. 1676-1681
    • Krawczak, M.1
  • 4
    • 0021943341 scopus 로고
    • An estimate of unique DNA sequence heterozygosity in the human genome
    • 2984104
    • Cooper DN Smith BA Cooke HJ Niemann S Schmidtke J An estimate of unique DNA sequence heterozygosity in the human genome Hum Genet 1985, 69(3):201-205. 2984104
    • (1985) Hum Genet , vol.69 , Issue.3 , pp. 201-205
    • Cooper, D.N.1    Smith, B.A.2    Cooke, H.J.3    Niemann, S.4    Schmidtke, J.5
  • 6
    • 0026053092 scopus 로고
    • Low nucleotide diversity in man
    • 1204640 1743489
    • Li WH Sadler LA Low nucleotide diversity in man Genetics 1991, 129(2):513-523. 1204640 1743489
    • (1991) Genetics , vol.129 , Issue.2 , pp. 513-523
    • Li, W.H.1    Sadler, L.A.2
  • 10
    • 54349107110 scopus 로고    scopus 로고
    • Genome-wide quantitative trait locus association scan of general cognitive ability using pooled DNA and 500K single nucleotide polymorphism microarrays
    • 18067574
    • Butcher LM Davis OS Craig IW Plomin R Genome-wide quantitative trait locus association scan of general cognitive ability using pooled DNA and 500K single nucleotide polymorphism microarrays Genes Brain Behav; 2007. 18067574
    • (2007) Genes Brain Behav
    • Butcher, L.M.1    Davis, O.S.2    Craig, I.W.3    Plomin, R.4
  • 11
    • 33846923410 scopus 로고    scopus 로고
    • Genetic polymorphisms in the nucleotide excision repair pathway and lung cancer risk: A meta-analysis
    • 1796947 17299578
    • Kiyohara C Yoshimasu K Genetic polymorphisms in the nucleotide excision repair pathway and lung cancer risk: A meta-analysis Int J Med Sci 2007, 4:59-71. 1796947 17299578
    • (2007) Int J Med Sci , vol.4 , pp. 59-71
    • Kiyohara, C.1    Yoshimasu, K.2
  • 13
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • 11856602
    • Rafalski A Applications of single nucleotide polymorphisms in crop genetics Curr Opin Plant Biol 2002, 5(2):94-100. 11856602
    • (2002) Curr Opin Plant Biol , vol.5 , Issue.2 , pp. 94-100
    • Rafalski, A.1
  • 14
    • 34548128406 scopus 로고    scopus 로고
    • SNP discovery via 454 transcriptome sequencing
    • 2169515 17662031
    • Barbazuk WB Emrich SJ Chen HD Li L Schnable PS SNP discovery via 454 transcriptome sequencing Plant J 2007, 51(5):910-918. 2169515 17662031
    • (2007) Plant J , vol.51 , Issue.5 , pp. 910-918
    • Barbazuk, W.B.1    Emrich, S.J.2    Chen, H.D.3    Li, L.4    Schnable, P.S.5
  • 17
    • 1642498217 scopus 로고    scopus 로고
    • SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa)
    • 14663524
    • Moreno-Vazquez S Ochoa OE Faber N Chao S Jacobs JM Maisonneuve B Kesseli RV Michelmore RW SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa) Genome 2003, 469(6):1059-1069. 14663524
    • (2003) Genome , vol.46 , Issue.6 , pp. 1059-1069
    • Moreno-Vazquez, S.1    Ochoa, O.E.2    Faber, N.3    Chao, S.4    Jacobs, J.M.5    Maisonneuve, B.6    Kesseli, R.V.7    Michelmore, R.W.8
  • 18
    • 0026949420 scopus 로고
    • Linkage disequilibrium mapping in isolated founder populations: Diastrophic dysplasia in Finland
    • 1345170
    • Hastbacka J de la Chapelle A Kaitila I Sistonen P Weaver A Lander E Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland Nat Genet 1992, 2(3):204-211. 1345170
    • (1992) Nat Genet , vol.2 , Issue.3 , pp. 204-211
    • Hastbacka, J.1    de la Chapelle, A.2    Kaitila, I.3    Sistonen, P.4    Weaver, A.5    Lander, E.6
  • 22
    • 39549102178 scopus 로고    scopus 로고
    • Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: Application to the large and unsequenced genomes of white spruce and black spruce
    • 2246113 18205909
    • Pavy N Pelgas B Beauseigle S Blais S Gagnon F Gosselin I Lamothe M Isabel N Bousquet J Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: Application to the large and unsequenced genomes of white spruce and black spruce BMC Genomics 2008, 9(1):21. 2246113 18205909
    • (2008) BMC Genomics , vol.9 , Issue.1 , pp. 21
    • Pavy, N.1    Pelgas, B.2    Beauseigle, S.3    Blais, S.4    Gagnon, F.5    Gosselin, I.6    Lamothe, M.7    Isabel, N.8    Bousquet, J.9
  • 24
    • 0038297210 scopus 로고    scopus 로고
    • A review of catfish genomics: Progress and perspectives
    • Liu ZJ A review of catfish genomics: Progress and perspectives Comparative and Functional Genomics 2003, 4:259-265.
    • (2003) Comparative and Functional Genomics , vol.4 , pp. 259-265
    • Liu, Z.J.1
  • 25
    • 4344695759 scopus 로고    scopus 로고
    • Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus)
    • 15136916
    • Serapion J Kucuktas H Feng J Liu ZJ Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus) Mar Biotechnol (NY) 2004, 6(4):364-377. 15136916
    • (2004) Mar Biotechnol (NY) , vol.6 , Issue.4 , pp. 364-377
    • Serapion, J.1    Kucuktas, H.2    Feng, J.3    Liu, Z.J.4
  • 26
    • 40849130829 scopus 로고    scopus 로고
    • Characterization, polymorphism assessment, and database construction for microsatellites from BAC end sequences of channel catfish (Ictalurus punctatus): A resource for integration of linkage and physical maps
    • Somridhivej B Wang S Sha Z Liu H Quilang J Xu P Li P Hu Z Liu ZJ Characterization, polymorphism assessment, and database construction for microsatellites from BAC end sequences of channel catfish (Ictalurus punctatus): A resource for integration of linkage and physical maps Aquaculture 2008, 275(1-4):76-80.
    • (2008) Aquaculture , vol.275 , Issue.1-4 , pp. 76-80
    • Somridhivej, B.1    Wang, S.2    Sha, Z.3    Liu, H.4    Quilang, J.5    Xu, P.6    Li, P.7    Hu, Z.8    Liu, Z.J.9
  • 27
    • 33746217018 scopus 로고    scopus 로고
    • Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species
    • 16879340
    • Xu P Wang S Liu L Peatman E Somridhivej B Thimmapuram J Gong G Liu ZJ Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species Anim Genet 2006, 37(4):321-326. 16879340
    • (2006) Anim Genet , vol.37 , Issue.4 , pp. 321-326
    • Xu, P.1    Wang, S.2    Liu, L.3    Peatman, E.4    Somridhivej, B.5    Thimmapuram, J.6    Gong, G.7    Liu, Z.J.8
  • 28
    • 0038260755 scopus 로고    scopus 로고
    • An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family
    • 1462775 14573480
    • Liu ZJ Karsi A Li P Cao D Dunham R An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family Genetics 2003, 165(2):687-694. 1462775 14573480
    • (2003) Genetics , vol.165 , Issue.2 , pp. 687-694
    • Liu, Z.J.1    Karsi, A.2    Li, P.3    Cao, D.4    Dunham, R.5
  • 29
    • 0034977074 scopus 로고    scopus 로고
    • A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus
    • 1461682 11404336
    • Waldbieser GC Bosworth BG Nonneman DJ Wolters WR A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus Genetics 2001, 158(2):727-734. 1461682 11404336
    • (2001) Genetics , vol.158 , Issue.2 , pp. 727-734
    • Waldbieser, G.C.1    Bosworth, B.G.2    Nonneman, D.J.3    Wolters, W.R.4
  • 30
    • 0037585294 scopus 로고    scopus 로고
    • Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus
    • 14604514
    • Quiniou SM Katagiri T Miller NW Wilson M Wolters WR Waldbieser GC Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus Genet Sel Evol 2003, 35(6):673-683. 14604514
    • (2003) Genet Sel Evol , vol.35 , Issue.6 , pp. 673-683
    • Quiniou, S.M.1    Katagiri, T.2    Miller, N.W.3    Wilson, M.4    Wolters, W.R.5    Waldbieser, G.C.6
  • 31
    • 34447292058 scopus 로고    scopus 로고
    • Characterization of a BAC library from channel catfish Ictalurus punctatus: Indications of high levels of chromosomal reshuffling among teleost genomes
    • 17671813
    • Wang S Xu P Thorsen J Zhu B de Jong PJ Waldbieser G Kucuktas H Liu ZJ Characterization of a BAC library from channel catfish Ictalurus punctatus: Indications of high levels of chromosomal reshuffling among teleost genomes Mar Biotechnol (NY) 2007, 9(6):701-711. 17671813
    • (2007) Mar Biotechnol (NY) , vol.9 , pp. 701-711
    • Wang, S.1    Xu, P.2    Thorsen, J.3    Zhu, B.4    de Jong, P.J.5    Waldbieser, G.6    Kucuktas, H.7    Liu, Z.J.8
  • 32
    • 33847333157 scopus 로고    scopus 로고
    • A first generation BAC-based physical map of the channel catfish genome
    • 1800894 17284319
    • Quiniou SM Waldbieser GC Duke MV A first generation BAC-based physical map of the channel catfish genome BMC Genomics 2007, 8:40. 1800894 17284319
    • (2007) BMC Genomics , vol.8 , pp. 40
    • Quiniou, S.M.1    Waldbieser, G.C.2    Duke, M.V.3
  • 33
    • 34447265677 scopus 로고    scopus 로고
    • A BAC-based physical map of the channel catfish genome
    • 17582737
    • Xu P Wang S Liu L Thorsen J Kucuktas H Liu ZJ A BAC-based physical map of the channel catfish genome Genomics 2007, 90(3):380-388. 17582737
    • (2007) Genomics , vol.90 , Issue.3 , pp. 380-388
    • Xu, P.1    Wang, S.2    Liu, L.3    Thorsen, J.4    Kucuktas, H.5    Liu, Z.J.6
  • 35
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 310812 10508846
    • Huang X Madan A CAP3: A DNA sequence assembly program Genome Res 1999, 9(9):868-877. 310812 10508846
    • (1999) Genome Res , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 36
    • 0344838601 scopus 로고    scopus 로고
    • Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP
    • 12584131
    • Barker G Batley J H OS Edwards KJ Edwards D Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP Bioinformatics 2003, 19(3):421-422. 12584131
    • (2003) Bioinformatics , vol.19 , Issue.3 , pp. 421-422
    • Barker, G.1    Batley, J.H.O.S.2    Edwards, K.J.3    Edwards, D.4
  • 37
    • 32344436202 scopus 로고    scopus 로고
    • Comparison of domestic and wild channel catfish (Ictalurus punctatus) populations provides no evidence for genetic impact
    • Simmons M Mickett K Kucuktas H Li P Dunham R Liu ZJ Comparison of domestic and wild channel catfish (Ictalurus punctatus) populations provides no evidence for genetic impact Aquaculture 2006, 252(2-4):133-146.
    • (2006) Aquaculture , vol.252 , Issue.2-4 , pp. 133-146
    • Simmons, M.1    Mickett, K.2    Kucuktas, H.3    Li, P.4    Dunham, R.5    Liu, Z.J.6
  • 38
    • 85017219253 scopus 로고    scopus 로고
    • Microsatellite markers and assessment of marker utility
    • Blackwell Publishing, Ames, IA Liu ZJ Chapter 5
    • Liu ZJ Microsatellite markers and assessment of marker utility Aquaculture Genome Technologies Blackwell Publishing, Ames, IA Liu ZJ 2007:CHapter 5 43-58.
    • (2007) Aquaculture Genome Technologies , pp. 43-58
    • Liu, Z.J.1
  • 39
    • 34547844090 scopus 로고    scopus 로고
    • SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates
    • 17463019
    • Hayes BJ Nilsen K Berg PR Grindflek E Lien S SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates Bioinformatics 2007, 23:1692-1693. 17463019
    • (2007) Bioinformatics , vol.23 , pp. 1692-1693
    • Hayes, B.J.1    Nilsen, K.2    Berg, P.R.3    Grindflek, E.4    Lien, S.5
  • 40
    • 0344719474 scopus 로고    scopus 로고
    • Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis
    • 14687075
    • He C Chen L Simmons M Li P Kim S Liu ZJ Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis Anim Genet 2003, 34(6):445-448. 14687075
    • (2003) Anim Genet , vol.34 , Issue.6 , pp. 445-448
    • He, C.1    Chen, L.2    Simmons, M.3    Li, P.4    Kim, S.5    Liu, Z.J.6
  • 42
    • 42149158792 scopus 로고    scopus 로고
    • Linking the genomes of nonmodel teleosts through comparative genomics
    • 18297360
    • Sarropoulou E Nousdili D Magoulas A G K Linking the genomes of nonmodel teleosts through comparative genomics Mar Biotechnol (NY) 2008, 10(3):227-233. 18297360
    • (2008) Mar Biotechnol (NY) , vol.10 , Issue.3 , pp. 227-233
    • Sarropoulou, E.1    Nousdili, D.2    Magoulas, A.G.K.3
  • 43
    • 9744219761 scopus 로고    scopus 로고
    • Chicken single nucleotide polymorphism identification and selection for genetic mapping
    • 15615001
    • Jalving R van't Slot R BA O Chicken single nucleotide polymorphism identification and selection for genetic mapping Poult Sci 2004, 83(12):1925-1931. 15615001
    • (2004) Poult Sci , vol.83 , Issue.12 , pp. 1925-1931
    • Jalving, R.1    van't Slot, R.B.A.O.2


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