Characterization of single nucleotide polymorphism markers for eelgrass (Zostera marina)

Molecular Ecology Resources

Volumn 8, Issue 6, 2008, Pages 1429-1435

  Ferber, Steven ^a   Reusch, Thorsten B H ^b   Stam, Wytze T ^a   Olsen, Jeanine L ^a  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

Expressed sequence tag; High throughput; Seagrass; Single nucleotide polymorphism; SNaPshot; Zostera marina

Indexed keywords

ZOSTERA MARINA;

EID: 55149106584     PISSN: 1755098X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2008.02251.x     Document Type: Article

References (21)

1. Belkhir K, Borsa P, Goudet J et al 2001) GENETIX, logiciel sous Windows pour la genetique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 171. Université de Montpellier II, Montpellier, France.
2. Brookfield JFY (1996) A simple new method for estimating null allele frequency from heterozygote deficiency. Molecular Ecology, 5, 453 455.
3. Brumfield RT, Beerli P, Nickerson DA et al 2003) The utility of single nucleotide polymorphisms in inferences of population history. Trends in Ecology & Evolution, 18, 249 256.
4. Elphinstone MS, Hinten GN, Anderson MJ et al 2003) An inexpensive and high-throughput procedure to extract and purify total genomic DNA for population studies. Molecular Ecology Notes, 3, 317 320.
5. Glaubitz JC, Rhodes OE, Dewoody JA (2003) Prospects for inferring pairwise relationships with single nucleotide polymorphisms. Molecular Ecology, 12, 1039 1047.
6. Gut IG, Lathrop GM (2004) Duplicating SNPs. Nature Genetics, 36, 789 790.
7. Kuhner MK, Beerli P, Yamato J et al 2000) Usefulness of single nucleotide polymorphism data for estimating population parameters. Genetics, 156, 439 447.
8. Morin PA, Luikart G, Wayne RK (2004) SNPs in ecology, evolution and conservation. Trends in Ecology & Evolution, 19, 208 216.
9. Olsen JL, Stam WT, Coyer JA et al 2004) North Atlantic phylogeography and large-scale population differentiation of the seagrass Zostera marina L. Molecular Ecology, 13, 1923 1941.
10. Orth RJ, Carruthers TJB, Dennison WC et al 2006) A global crisis for seagrass ecosystems. Bioscience, 56, 987 996.
11. Procaccini G, Olsen JL, Reusch TBH (2007) Contribution of genetics and genomics to seagrass biology and conservation. Journal of Experimental Marine Biology and Ecology, 350, 234 259.
12. Reusch TBH, Stam WT, Olsen JL (1999) Microsatellite loci in eelgrass Zostera marina reveal marked polymorphism within and among populations. Molecular Ecology, 8, 317 321.
13. Reusch TBH, Stam WT, Olsen JL (2000) A microsatellite-based estimation of clonal diversity and population subdivision in Zostera marina, a marine flowering plant. Molecular Ecology, 9, 127 140.
14. Reusch TBH, Veron A, Preuss C et al 2008) Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress. Marine Biotechnology, 10, 297 309.
15. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223 225.
16. Seddon JM, Parker HG, Ostrander EA et al 2005) SNPs in ecological and conservation studies: a test in the Scandinavian wolf population. Molecular Ecology, 14, 503 511.
17. Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978 989.
18. Udall JA, Swanson JM, Nettleton D et al 2006) A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics, 173, 1823 1827.
19. Vignal A, Milan D, SanCristobal M et al 2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genetics Selection Evolution, 34, 275 305.
20. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
21. Wright S (1969) Evolution and the genetics of populations, Vol. 2. The Theory of Gene Frequencies. University of Chicago Press, Chicago.