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Volumn 9, Issue , 2008, Pages

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

EID: 41849144117     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-9-18     Document Type: Article
Times cited : (111)

References (42)
  • 1
    • 0004278705 scopus 로고    scopus 로고
    • New York, Walker & Company
    • Kurlansky M Cod New York, Walker & Company 1997.
    • (1997) Cod
    • Kurlansky, M.1
  • 3
    • 33748619762 scopus 로고    scopus 로고
    • Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): Implications for inferring population structure in nonmodel organisms
    • 10.1111/j.1365-294X.2006.03025.x 16968266
    • Nielsen EE Hansen MM Meldrup D Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): Implications for inferring population structure in nonmodel organisms Molecular Ecology 2006, 15(11):3219-3229. 10.1111/j.1365-294X.2006.03025.x 16968266
    • (2006) Molecular Ecology , vol.15 , Issue.11 , pp. 3219-3229
    • Nielsen, E.E.1    Hansen, M.M.2    Meldrup, D.3
  • 4
    • 34248642868 scopus 로고    scopus 로고
    • Atlantic cod (Gadus morhua L) in inner and outer coastal zones of northern Norway display divergent genetic signature at non-neutral loci
    • 10.1016/j.fishres.2007.04.001
    • Westgaard JI Fevolden SE Atlantic cod (Gadus morhua L) in inner and outer coastal zones of northern Norway display divergent genetic signature at non-neutral loci Fisheries research 2007, 85(3):10. 10.1016/ j.fishres.2007.04.001
    • (2007) Fisheries Research , vol.85 , Issue.3 , pp. 10
    • Westgaard, J.I.1    Fevolden, S.E.2
  • 5
    • 0022236303 scopus 로고
    • Genetic variation in Atlantic cod (Gadus morhua) throughout its range
    • Mork J Ryman N Stahl G Utter F Sundnes G Genetic variation in Atlantic cod (Gadus morhua) throughout its range Can J Fish Aquat Sci 1985, 42:1580-1587.
    • (1985) Can J Fish Aquat Sci , vol.42 , pp. 1580-1587
    • Mork, J.1    Ryman, N.2    Stahl, G.3    Utter, F.4    Sundnes, G.5
  • 6
    • 0028860163 scopus 로고
    • Genetic population structure and gone flow in the Atlantic cod Gadus morhua: A comparison of allozyme and nuclear RFLP loci
    • 1206334 7705638
    • Pogson GH Mesa KA Boutilier RG Genetic population structure and gone flow in the Atlantic cod Gadus morhua: A comparison of allozyme and nuclear RFLP loci Genetics 1995, 139(1):375-385. 1206334 7705638
    • (1995) Genetics , vol.139 , Issue.1 , pp. 375-385
    • Pogson, G.H.1    Mesa, K.A.2    Boutilier, R.G.3
  • 7
    • 0034143524 scopus 로고    scopus 로고
    • Development of tri- and tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua)
    • 10.1046/j.1365-294x.2000.00804-2.x 10672170
    • Miller KM Le KD Beacham TD Development of tri- and tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua) Molecular Ecology 2000, 9:238-240. 10.1046/j.1365-294x.2000.00804-2.x 10672170
    • (2000) Molecular Ecology , vol.9 , pp. 238-240
    • Miller, K.M.1    Le, K.D.2    Beacham, T.D.3
  • 8
    • 0038781798 scopus 로고    scopus 로고
    • Simultaneous analysis of six microsatellite markers in Atlantic cod (Gadus morhua): A novel multiplex assay system for use in selective breeding studies
    • 12876649
    • Delghandi M Mortensen A Westgaard JI Simultaneous analysis of six microsatellite markers in Atlantic cod (Gadus morhua): A novel multiplex assay system for use in selective breeding studies Mar Biotechnol 2003, 5:141-148. 12876649
    • (2003) Mar Biotechnol , vol.5 , pp. 141-148
    • Delghandi, M.1    Mortensen, A.2    Westgaard, J.I.3
  • 10
    • 33751307458 scopus 로고    scopus 로고
    • Development of twenty-five gene-associated microsatellite markers of Atlantic cod (Gadus morhua L.)
    • 10.1111/j.1471-8286.2006.01450.x
    • Stenvik J Wesmajervi MS Fjalestad KT Damsgård B Delghandi M Development of twenty-five gene-associated microsatellite markers of Atlantic cod (Gadus morhua L.) Molecular Ecology Notes 2006, 6:1105-1107. 10.1111/j.1471-8286.2006.01450.x
    • (2006) Molecular Ecology Notes , vol.6 , pp. 1105-1107
    • Stenvik, J.1    Wesmajervi, M.S.2    Fjalestad, K.T.3    Damsgård, B.4    Delghandi, M.5
  • 11
    • 33845991140 scopus 로고    scopus 로고
    • Eight new microsatellite markers in Atlantic cod (Gadus morhua L.) derived from an enriched genomic library
    • 10.1111/j.1471-8286.2006.01555.x
    • Wesmajervi MS Tafese T Stenvik J Fjalestad KT Damsgård B Delghandi M Eight new microsatellite markers in Atlantic cod (Gadus morhua L.) derived from an enriched genomic library. Molecular Ecology Notes 2007, 7:138-140. 10.1111/j.1471-8286.2006.01555.x
    • (2007) Molecular Ecology Notes , vol.7 , pp. 138-140
    • Wesmajervi, M.S.1    Tafese, T.2    Stenvik, J.3    Fjalestad, K.T.4    Damsgård, B.5    Delghandi, M.6
  • 12
    • 34247582225 scopus 로고    scopus 로고
    • Identification and characterisation of thirteen new microsatellites for Atlantic cod (Gadus morhua L.) from a repeat-enriched library
    • 10.1007/s10592-006-9200-3
    • Westgaard JI Tafese T Wesmajervi MS Stenvik J Fjalestad KT Damsgård B Delghandi M Identification and characterisation of thirteen new microsatellites for Atlantic cod (Gadus morhua L.) from a repeat-enriched library. Conservation Genetics 2007, 3:749-751. 10.1007/ s10592-006-9200-3
    • (2007) Conservation Genetics , vol.3 , pp. 749-751
    • Westgaard, J.I.1    Tafese, T.2    Wesmajervi, M.S.3    Stenvik, J.4    Fjalestad, K.T.5    Damsgård, B.6    Delghandi, M.7
  • 14
    • 0031282584 scopus 로고    scopus 로고
    • Genetic divergence at the synaptophysin (Syp I) locus among Norwegian coastal and north-east Arctic populations of Atlantic cod
    • Fevolden S Pogson G Genetic divergence at the synaptophysin (Syp I) locus among Norwegian coastal and north-east Arctic populations of Atlantic cod Journal of Fish Biology 1997, 51(5):895-908.
    • (1997) Journal of Fish Biology , vol.51 , Issue.5 , pp. 895-908
    • Fevolden, S.1    Pogson, G.2
  • 15
    • 25144493911 scopus 로고    scopus 로고
    • Pantophysin (Pan I) locus divergence between inshore v offshore and northern v southern populations of Atlantic cod in the north-east Atlantic
    • 10.1111/j.0022-1112.2005.00738.x
    • Sarvas TH Fevolden SE Pantophysin (Pan I) locus divergence between inshore v offshore and northern v southern populations of Atlantic cod in the north-east Atlantic Journal of Fish Biology 2005, 67(2):444-469. 10.1111/j.0022-1112.2005.00738.x
    • (2005) Journal of Fish Biology , vol.67 , Issue.2 , pp. 444-469
    • Sarvas, T.H.1    Fevolden, S.E.2
  • 16
    • 34447096144 scopus 로고    scopus 로고
    • Comparing microsatellite variation in north-east Atlantic cod (Gadus morhua L.) to genetic structuring as revealed by the pantophysin (Pan I) locus
    • 10.1111/j.1095-8649.2007.01456.x
    • Skarstein TH Westgaard. J I Fevolden SE Comparing microsatellite variation in north-east Atlantic cod (Gadus morhua L.) to genetic structuring as revealed by the pantophysin (Pan I) locus Journal of Fish Biology 2007 2007, 70(supplement C):271-290. 10.1111/ j.1095-8649.2007.01456.x
    • (2007) Journal of Fish Biology 2007 , vol.70 , Issue.SUPPL. C , pp. 271-290
    • Skarstein, T.H.1    Westgaard, J.I.2    Fevolden, S.E.3
  • 17
    • 36949052846 scopus 로고
    • Genetic differences between cod groups in the Lofoten area
    • 10.1038/212824a0
    • Møller D Genetic differences between cod groups in the Lofoten area. Nature 1966, 212:824. 10.1038/212824a0
    • (1966) Nature , vol.212 , pp. 824
    • Møller, D.1
  • 18
    • 0014395156 scopus 로고
    • Genetic diversity in spawning cod along the Norwegian coast
    • 5721322
    • Møller D Genetic diversity in spawning cod along the Norwegian coast. Hereditas 1968, 60:1-32. 5721322
    • (1968) Hereditas , vol.60 , pp. 1-32
    • Møller, D.1
  • 19
    • 0001626786 scopus 로고
    • The relationship between arctic and coastal cod in their immature stages illustrated by frequencies of genetic characters
    • Møller D The relationship between arctic and coastal cod in their immature stages illustrated by frequencies of genetic characters. Fiskeridirektoratets Skriften, Serie Havundersokelser 1969, 15:220-233.
    • (1969) Fiskeridirektoratets Skriften, Serie Havundersokelser , vol.15 , pp. 220-233
    • Møller, D.1
  • 20
    • 0013822824 scopus 로고
    • Haemoglobin polymorphism of cod in the North Sea and the North Atlantic Ocean
    • 5896613
    • Sick K Haemoglobin polymorphism of cod in the North Sea and the North Atlantic Ocean. Hereditas 1965, 54:49-69. 5896613
    • (1965) Hereditas , vol.54 , pp. 49-69
    • Sick, K.1
  • 21
    • 0000996407 scopus 로고
    • Genetic variation and population structure of cod, Gadus morhua L., in some fjords in northern Norway
    • Jørstad K Nævdal G Genetic variation and population structure of cod, Gadus morhua L., in some fjords in northern Norway 35 1989, Journal of Fish Biology 245-252.
    • (1989) Journal of Fish Biology , vol.35 , pp. 245-252
    • Jørstad, K.1    Nævdal, G.2
  • 22
    • 38249004035 scopus 로고
    • Haemoglobin variation - A reliable marker for cod (Gadus morhua L.)
    • 10.1016/0165-7836(93)90143-U
    • Dahle G Jørstad K Haemoglobin variation - a reliable marker for cod (Gadus morhua L.) Fisheries Research 1993, 16:301-311. 10.1016/ 0165-7836(93)90143-U
    • (1993) Fisheries Research , vol.16 , pp. 301-311
    • Dahle, G.1    Jørstad, K.2
  • 23
    • 0033538410 scopus 로고    scopus 로고
    • Genetic structure of cod along the coast of Norway: Results from isozyme studies
    • Mork J Giæver M Genetic structure of cod along the coast of Norway: Results from isozyme studies Sarsia 1999, 84:157-168.
    • (1999) Sarsia , vol.84 , pp. 157-168
    • Mork, J.1    Giæver, M.2
  • 24
    • 2442502566 scopus 로고    scopus 로고
    • Mitochondrial cytochrome b DNA variation in the high-fecundity Atlantic cod: Trans-Atlantic clines and shallow gene genealogy
    • 1470818 15126405 10.1534/genetics.166.4.1871
    • Árnason E Mitochondrial cytochrome b DNA variation in the high-fecundity Atlantic cod: Trans-Atlantic clines and shallow gene genealogy. Genetics 2004, 166:1871-1885. 1470818 15126405 10.1534/ genetics.166.4.1871
    • (2004) Genetics , vol.166 , pp. 1871-1885
    • Árnason, E.1
  • 25
    • 34047264454 scopus 로고    scopus 로고
    • An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences
    • 10.1016/j.aquaculture.2007.01.037
    • Hayes B Lærdahl JK Lien S Moen T Berg P Hindar K Davidson WS Koop BF Adzhubei A Høyheim B An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences Aquaculture 2007, 265:82-90. 10.1016/ j.aquaculture.2007.01.037
    • (2007) Aquaculture , vol.265 , pp. 82-90
    • Hayes, B.1    Lærdahl, J.K.2    Lien, S.3    Moen, T.4    Berg, P.5    Hindar, K.6    Davidson, W.S.7    Koop, B.F.8    Adzhubei, A.9    Høyheim, B.10
  • 30
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing B Hillier L Wendl CW Green P Base-calling of automated sequencer traces using Phred. I. Accuracy assessment Genome Research 1998, 8:175-185.
    • (1998) Genome Research , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, C.W.3    Green, P.4
  • 31
    • 41849134878 scopus 로고    scopus 로고
    • University of Washington Genome Center http://www.genome.washington.edu/ UWGC
  • 33
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D Abajian C Green P Consed: A graphical tool for sequence finishing. Genome Research 1998, 8:195-202.
    • (1998) Genome Research , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 35
  • 36
    • 41849147706 scopus 로고    scopus 로고
    • Gene Ontology Home http://www.geneontology.org
  • 37
    • 0043207446 scopus 로고    scopus 로고
    • A double-screening method to identify reliable candidate non-synonymous SNPs from chicken EST data
    • 10.1046/j.1365-2052.2003.01003.x 12873212
    • Kim H Schmidt CJ Decker KS Emara MG A double-screening method to identify reliable candidate non-synonymous SNPs from chicken EST data. Animal Genetics 2003, 34:249-254. 10.1046/j.1365-2052.2003.01003.x 12873212
    • (2003) Animal Genetics , vol.34 , pp. 249-254
    • Kim, H.1    Schmidt, C.J.2    Decker, K.S.3    Emara, M.G.4
  • 38
    • 33644855340 scopus 로고    scopus 로고
    • Genotyping of pantophysin I (Pan I) of Atlantic cod (Gadus morhua L.) by allele-specific PCR
    • 10.1111/j.1471-8286.2005.01178.x
    • Stenvik J Wesmajervi MS Damsgård B Delghandi M Genotyping of pantophysin I (Pan I) of Atlantic cod (Gadus morhua L.) by allele-specific PCR. Molecular Ecology Notes 2006, 6:272-275. 10.1111/ j.1471-8286.2005.01178.x
    • (2006) Molecular Ecology Notes , vol.6 , pp. 272-275
    • Stenvik, J.1    Wesmajervi, M.S.2    Damsgård, B.3    Delghandi, M.4
  • 39
    • 41849145057 scopus 로고    scopus 로고
    • Sequenom http://www.sequenom.com
  • 41
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: An integrated software package for population genetics data analysis
    • Excoffier L Laval G Schneider S Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 2005, 1:47-50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 42
    • 41849122493 scopus 로고    scopus 로고
    • FDIST2 distribution site http://www.rubic.reading.ac.uk/~mab/software/ fdist2.zip


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.