Specific recognition of cytosine by hypoxanthine in pyrrolidinyl peptide nucleic acid

Organic and Biomolecular Chemistry

Volumn 11, Issue 14, 2013, Pages 2310-2317

  Vilaivan, Chotima ^a   Srinarang, Wimonmas ^a   Yotapan, Nattawut ^a   Mansawat, Woraluk ^a   Boonlua, Chalothorn ^a   Kawakami, Junji ^b   Yamaguchi, Yoshie ^b   Tanaka, Yuko ^b   Vilaivan, Tirayut ^a  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b KONAN UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BASE PAIRING; DNA BINDING STUDIES; FLUORESCENCE QUENCHING; NUCLEOBASES; PEPTIDE BACKBONES; PEPTIDE NUCLEIC ACID; SECONDARY STRUCTURES; SPECIFIC RECOGNITION;

DNA;

PEPTIDES;

CYTOSINE; HYPOXANTHINE; PEPTIDE NUCLEIC ACID; PYRROLIDINE DERIVATIVE;

ARTICLE; BASE PAIRING; CHEMICAL STRUCTURE; CHEMISTRY; CIRCULAR DICHROISM; MASS SPECTROMETRY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; THERMODYNAMICS;

BASE PAIRING; BASE SEQUENCE; CIRCULAR DICHROISM; CYTOSINE; HYPOXANTHINE; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; PEPTIDE NUCLEIC ACIDS; PYRROLIDINES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; THERMODYNAMICS;

EID: 84875026777     PISSN: 14770520     EISSN: None     Source Type: Journal    
DOI: 10.1039/c3ob27129c     Document Type: Article

References (35)

1. F. H. C. Crick J. Mol. Biol. 1996 19 548
2. F. H. Martin M. M. Castro F. Aboul-ela I. Tinoco Jr Nucleic Acids Res. 1985 13 8927
3. E. Ohtsuka S. Matsuki M. Ikehara Y. Takahashi K. Matsubara J. Biol. Chem. 1985 260 2605
4. S. C. Case-Green E. M. Southern Nucleic Acids Res. 1994 22 131
5. N. E. Watkins Jr J. SantaLucia Jr Nucleic Acids Res. 2005 33 6258
6. X. Sun J. K. Lee J. Org. Chem. 2010 75 1848
7. A. A. Koshkin J. Org. Chem. 2004 69 3711
8. Z. Timár S. Bottka L. Kovács B. Penke Nucleosides Nucleotides 1999 18 1131
9. P. E. Nielsen M. Egholm R. H. Berg O. Buchardt Science 1991 254 1497
10. M. Egholm O. Buchardt P. E. Nielsen R. H. Berg J. Am. Chem. Soc. 1992 114 1895
11. M. Egholm P. E. Nielsen O. Buchardt R. H. Berg J. Am. Chem. Soc. 1992 114 9677
12. R. E. Hudson M. Goncharenko A. P. Wallman F. Wojciechowski Synlett 2005 1442
13. G. J. Sanjayan V. R. Pedireddi K. N. Ganesh Org. Lett. 2000 2 2825
14. R. Vysabhattar K. N. Ganesh Tetrahedron Lett. 2008 49 1314
15. K. F. MacKinnon D. F. Qualley S. A. Woski Tetrahedron Lett. 2007 48 8074
16. H. Challa M. L. Styers S. A. Woski Org. Lett. 1999 1 1639
17. H. Challa S. A. Woski Tetrahedron Lett. 1999 40 8333
18. T. Vilaivan C. Srisuwannaket Org. Lett. 2006 8 1897
19. C. Vilaivan C. Srisuwannaket C. Ananthanawat C. Suparpprom J. Kawakami Y. Yamaguchi Y. Tanaka T. Vilaivan Artif. DNA PNA XNA 2011 2 50
20. C. Suparpprom C. Srisuwannket P. Sangvanich T. Vilaivan Tetrahedron Lett. 2005 46 2833
21. C. Ananthanawat T. Vilaivan V. P. Hoven X. D. Su Biosens. Bioelectron. 2010 25 1064
22. G. Lowe T. Vilaivan J. Chem. Soc., Perkin Trans. 1 1997 547
23. V. Antle C. A. Caperelli Nucleosides Nucleotides 1999 18 1911
24. S. Hikishima M. Isobe S. Koyanagi S. Soeda H. Shimeno S. Shibuya T. Yokomatsu Bioorg. Med. Chem. 2006 14 1660
25. R. A. Tromp R. F. Spanjersberg J. K. von Frijtag Drabbe Knzel A. P. IJzerman J. Med. Chem. 2005 48 321
26. B. R. Baker P. M. Tanna J. Org. Chem. 1965 30 2857
27. M. L. Peterson R. Vince J. Med. Chem. 1991 34 2787
28. L. R. Rutledge S. D. Wetmore Phys. Chem. Chem. Phys. 2012 14 2743
29. S. Burge G. N. Parkinson P. Hazel A. K. Todd S. Neidle Nucleic Acids Res. 2006 34 5402
30. E. Paleček Electroanalysis 1996 8 7
31. J. Wang G. Rivas J. R. Fernandes J. L. L. Paz M. Jiang R. Waymire Anal. Chim. Acta 1998 375 197
32. C. A. M. Seidel A. Schulz M. H. M. Sauer J. Phys. Chem. 1996 100 5541
33. I. Nazarenko R. Pires B. Lowe M. Obaidy A. Rashtchian Nucleic Acids Res. 2002 30 2089
34. A. O. Crockett C. L. Wittwer Anal. Biochem. 2001 290 89
35. J. Kawakami Y. Tanaka K. Kishimoto Nucleic Acids Symp. Ser. 2009 53 227