-
1
-
-
0036656033
-
Molecular systematics and the role of the "varzea" - "terra-firme" ecotone in the diversification of Xiphorhynchus woodcreepers (Aves: Dendrocolaptidae)
-
Aleixo A (2002) Molecular systematics and the role of the "varzea" - "terra-firme" ecotone in the diversification of Xiphorhynchus woodcreepers (Aves: Dendrocolaptidae). Auk 119(3): 621-640.
-
(2002)
Auk
, vol.119
, Issue.3
, pp. 621-640
-
-
Aleixo, A.1
-
2
-
-
3042578225
-
Historical diversification of a Terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification
-
Aleixo A (2004) Historical diversification of a Terra-firme forest bird superspecies: a phylogeographic perspective on the role of different hypotheses of Amazonian diversification. Evolution 58(6): 1303-1317.
-
(2004)
Evolution
, vol.58
, Issue.6
, pp. 1303-1317
-
-
Aleixo, A.1
-
3
-
-
79952684501
-
Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot
-
Álvarez-Presas M, Carbayo F, Rozas J, Riutort M (2011) Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot. J Evol Biol 24(4): 887-896.
-
(2011)
J Evol Biol
, vol.24
, Issue.4
, pp. 887-896
-
-
Álvarez-Presas, M.1
Carbayo, F.2
Rozas, J.3
Riutort, M.4
-
4
-
-
84856249842
-
Demographic processes in the montane Atlantic rainforest: molecular and Cytogenetic evidence from the endemic frog Proceratophrys boiei
-
Amaro RC, Carnaval AC, Yonenaga-Yassuda Y, Trefaut Rodrigues M (2012) Demographic processes in the montane Atlantic rainforest: molecular and Cytogenetic evidence from the endemic frog Proceratophrys boiei. Mol Phylogenet Evol 63: 880-888.
-
(2012)
Mol Phylogenet Evol
, vol.63
, pp. 880-888
-
-
Amaro, R.C.1
Carnaval, A.C.2
Yonenaga-Yassuda, Y.3
Trefaut Rodrigues, M.4
-
5
-
-
17444424295
-
Serial SimCoal: a population genetics model for data from multiple populations and points in time
-
Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA (2005) Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics 21(8): 1733-1734.
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1733-1734
-
-
Anderson, C.N.K.1
Ramakrishnan, U.2
Chan, Y.L.3
Hadly, E.A.4
-
7
-
-
33644936396
-
Bird Species Sensitivity in a Fragmented Landscape of the Atlantic Forest in Southern Brazil1
-
Anjos L (2006) Bird Species Sensitivity in a Fragmented Landscape of the Atlantic Forest in Southern Brazil1. Biotropica 38(2): 229-234.
-
(2006)
Biotropica
, vol.38
, Issue.2
, pp. 229-234
-
-
Anjos, L.1
-
8
-
-
79960928370
-
Bird species abundance-occupancy patterns and sensitivity to forest fragmentation: implications for conservation in the Brazilian Atlantic forest
-
Anjos L, Collins CD, Holt RD, Volpato GH, Mendonça LB, Lopes EV, Boçon R, Bisheimer MV, Serafini PP, Carvalho J (2011) Bird species abundance-occupancy patterns and sensitivity to forest fragmentation: implications for conservation in the Brazilian Atlantic forest. Biol Conserv 144: 2213-2222.
-
(2011)
Biol Conserv
, vol.144
, pp. 2213-2222
-
-
Anjos, L.1
Collins, C.D.2
Holt, R.D.3
Volpato, G.H.4
Mendonça, L.B.5
Lopes, E.V.6
Boçon, R.7
Bisheimer, M.V.8
Serafini, P.P.9
Carvalho, J.10
-
10
-
-
0002447606
-
Mitochondrial control region sequences as tools for understanding evolution
-
D. P. Mindell (Ed.), San Diego: Academic
-
Baker AJ, Marshall HD (1997) Mitochondrial control region sequences as tools for understanding evolution. In: Mindell DP (ed) Avian molecular evolution and systematics. Academic, San Diego, pp 51-82.
-
(1997)
Avian Molecular Evolution and Systematics
, pp. 51-82
-
-
Baker, A.J.1
Marshall, H.D.2
-
11
-
-
77958477282
-
Phylogeography and historical demography of the Neotropical stingless bee Melipona quadrifasciata (Hymenoptera, Apidae): incongruence between morphology and mitochondrial DNA
-
Batalha-Filho H, Waldschmidt AM, Campos LAO, Tavares MG, Fernandes-Salomão TM (2010) Phylogeography and historical demography of the Neotropical stingless bee Melipona quadrifasciata (Hymenoptera, Apidae): incongruence between morphology and mitochondrial DNA. Apidologie 41(5): 534-547.
-
(2010)
Apidologie
, vol.41
, Issue.5
, pp. 534-547
-
-
Batalha-Filho, H.1
Waldschmidt, A.M.2
Campos, L.A.O.3
Tavares, M.G.4
Fernandes-Salomão, T.M.5
-
12
-
-
84867695256
-
Phylogeography of an Atlantic forest passerine reveals demographic stability through the last glacial maximum
-
Batalha-Filho H, Cabanne GS, Miyaki CY (2012) Phylogeography of an Atlantic forest passerine reveals demographic stability through the last glacial maximum. Mol Phylogenet Evol. http://dx. doi. org/10. 1016/j. ympev. 2012. 08. 010.
-
(2012)
Mol Phylogenet Evol
-
-
Batalha-Filho, H.1
Cabanne, G.S.2
Miyaki, C.Y.3
-
13
-
-
0036743632
-
The genetic effects of forest fragmentation on five species of Amazonian birds
-
Bates JM (2002) The genetic effects of forest fragmentation on five species of Amazonian birds. J Avian Biol 33(3): 276-294.
-
(2002)
J Avian Biol
, vol.33
, Issue.3
, pp. 276-294
-
-
Bates, J.M.1
-
14
-
-
0037022035
-
South and southeast Brazilian grasslands during Late Quaternary times: a synthesis
-
Behling H (2002) South and southeast Brazilian grasslands during Late Quaternary times: a synthesis. Palaeogeogr Palaeoclimatol Palaeoecol 177(1-2): 19-27.
-
(2002)
Palaeogeogr Palaeoclimatol Palaeoecol
, vol.177
, Issue.1-2
, pp. 19-27
-
-
Behling, H.1
-
15
-
-
0035526668
-
Tropical rain forest and climate dynamics of the Atlantic lowland, Southern Brazil, during the late Quaternary
-
Behling H, Negrelle RRB (2001) Tropical rain forest and climate dynamics of the Atlantic lowland, Southern Brazil, during the late Quaternary. Quat Res 56(3): 383-389.
-
(2001)
Quat Res
, vol.56
, Issue.3
, pp. 383-389
-
-
Behling, H.1
Negrelle, R.R.B.2
-
16
-
-
0037141191
-
Late Quaternary vegetational and climate dynamics in southeastern Brazil, inferences from marine cores GeoB 3229-2 and GeoB 3202-1
-
Behling H, Arz HW, Patzold J, Wefer G (2002) Late Quaternary vegetational and climate dynamics in southeastern Brazil, inferences from marine cores GeoB 3229-2 and GeoB 3202-1. Palaeogeogr Palaeoclimatol Palaeoecol 179(3-4): 227-243.
-
(2002)
Palaeogeogr Palaeoclimatol Palaeoecol
, vol.179
, Issue.3-4
, pp. 227-243
-
-
Behling, H.1
Arz, H.W.2
Patzold, J.3
Wefer, G.4
-
17
-
-
33744466013
-
Serial coalescent simulations suggest a weak genealogical relationship between Etruscans and modern Tuscans
-
Belle EM, Ramakrishnan U, Mountain JL, Barbujani G (2006) Serial coalescent simulations suggest a weak genealogical relationship between Etruscans and modern Tuscans. Proc Natl Acad Sci USA 103(21): 8012-8017.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.21
, pp. 8012-8017
-
-
Belle, E.M.1
Ramakrishnan, U.2
Mountain, J.L.3
Barbujani, G.4
-
18
-
-
70149084366
-
Ecology predicts levels of genetic differentiation in Neotropical birds
-
Burney CW, Brumfield RT (2009) Ecology predicts levels of genetic differentiation in Neotropical birds. Am Nat 174(3): 358-368.
-
(2009)
Am Nat
, vol.174
, Issue.3
, pp. 358-368
-
-
Burney, C.W.1
Brumfield, R.T.2
-
19
-
-
34247332662
-
Phylogeography of Xiphorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest
-
Cabanne GS, Santos FR, Miyaki CY (2007) Phylogeography of Xiphorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest. Biol J Linn Soc 91(1): 73-84.
-
(2007)
Biol J Linn Soc
, vol.91
, Issue.1
, pp. 73-84
-
-
Cabanne, G.S.1
Santos, F.R.2
Miyaki, C.Y.3
-
20
-
-
56549112711
-
Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): biogeography and systematics implications
-
Cabanne GS, d'Horta FM, Sari EHR, Santos FR, Miyaki CY (2008) Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): biogeography and systematics implications. Mol Phylogenet Evol 49: 760-773.
-
(2008)
Mol Phylogenet Evol
, vol.49
, pp. 760-773
-
-
Cabanne, G.S.1
D'Horta, F.M.2
Sari, E.H.R.3
Santos, F.R.4
Miyaki, C.Y.5
-
21
-
-
79960432634
-
Evolution of Dendrocolaptes platyrostris (Aves: Furnariidae) between the South American open vegetation corridor and the Atlantic forest
-
Cabanne GS, D'Horta FM, Meyer D, Silva JMC, Miyaki CY (2011) Evolution of Dendrocolaptes platyrostris (Aves: Furnariidae) between the South American open vegetation corridor and the Atlantic forest. Biol J Linn Soc 103(4): 801-820.
-
(2011)
Biol J Linn Soc
, vol.103
, Issue.4
, pp. 801-820
-
-
Cabanne, G.S.1
D'Horta, F.M.2
Meyer, D.3
Silva, J.M.C.4
Miyaki, C.Y.5
-
22
-
-
45249117221
-
Historical climate modeling predicts patterns of current biodiversity in the Brazilian Atlantic forest
-
Carnaval AC, Moritz C (2008) Historical climate modeling predicts patterns of current biodiversity in the Brazilian Atlantic forest. J Biogeogr 35: 1187-1201.
-
(2008)
J Biogeogr
, vol.35
, pp. 1187-1201
-
-
Carnaval, A.C.1
Moritz, C.2
-
23
-
-
59849093347
-
Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot
-
Carnaval AC, Hickerson MJ, Haddad CFB, Rodrigues MT, Moritz C (2009) Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science 323(5915): 785-789.
-
(2009)
Science
, vol.323
, Issue.5915
, pp. 785-789
-
-
Carnaval, A.C.1
Hickerson, M.J.2
Haddad, C.F.B.3
Rodrigues, M.T.4
Moritz, C.5
-
24
-
-
33646483919
-
Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
-
Chan YL, Anderson CNK, Hadly EA (2006) Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. PLoS Genet 2(4): 451-460.
-
(2006)
PLoS Genet
, vol.2
, Issue.4
, pp. 451-460
-
-
Chan, Y.L.1
Anderson, C.N.K.2
Hadly, E.A.3
-
25
-
-
18744367198
-
Complex evolutionary history of a Neotropical lowland forest bird (Lepidothrix coronata) and its implications for historical hypotheses of the origin of Neotropical avian diversity
-
Cheviron ZA, Hackett SJ, Capparella AP (2005) Complex evolutionary history of a Neotropical lowland forest bird (Lepidothrix coronata) and its implications for historical hypotheses of the origin of Neotropical avian diversity. Mol Phylogenet Evol 36(2): 338-357.
-
(2005)
Mol Phylogenet Evol
, vol.36
, Issue.2
, pp. 338-357
-
-
Cheviron, Z.A.1
Hackett, S.J.2
Capparella, A.P.3
-
27
-
-
79954588284
-
The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic Forest passerine
-
d'Horta F, Cabanne GS, Meyer D, Miyaki CY (2011) The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic Forest passerine. Mol Ecol 20: 1923-1935.
-
(2011)
Mol Ecol
, vol.20
, pp. 1923-1935
-
-
D'Horta, F.1
Cabanne, G.S.2
Meyer, D.3
Miyaki, C.Y.4
-
28
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.1
Rambaut, A.2
-
29
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial-DNA restriction data
-
Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial-DNA restriction data. Genetics 131(2): 479-491.
-
(1992)
Genetics
, vol.131
, Issue.2
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
31
-
-
65349191801
-
Genetic evidence of geographical groups among Neanderthals
-
Fabre V, Condemi S, Degioanni A (2009) Genetic evidence of geographical groups among Neanderthals. PLoS ONE 4(4): e5151.
-
(2009)
PLoS ONE
, vol.4
, Issue.4
-
-
Fabre, V.1
Condemi, S.2
Degioanni, A.3
-
32
-
-
67649861387
-
Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability
-
Fitzpatrick SW, Brasileiro CA, Haddad CFB, Zamudio KR (2009) Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability. Mol Ecol 18(13): 2877-2896.
-
(2009)
Mol Ecol
, vol.18
, Issue.13
, pp. 2877-2896
-
-
Fitzpatrick, S.W.1
Brasileiro, C.A.2
Haddad, C.F.B.3
Zamudio, K.R.4
-
33
-
-
0030821992
-
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
-
Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147(2): 915-925.
-
(1997)
Genetics
, vol.147
, Issue.2
, pp. 915-925
-
-
Fu, Y.X.1
-
35
-
-
33750206772
-
Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest
-
Grazziotin FG, Monzel M, Echeverrigaray S, Bonatto SL (2006) Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest. Mol Ecol 15(13): 3969-3982.
-
(2006)
Mol Ecol
, vol.15
, Issue.13
, pp. 3969-3982
-
-
Grazziotin, F.G.1
Monzel, M.2
Echeverrigaray, S.3
Bonatto, S.L.4
-
36
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52(5): 696-704.
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
39
-
-
0034702196
-
The genetic legacy of the Quaternary ice ages
-
Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature 405(6789): 907-913.
-
(2000)
Nature
, vol.405
, Issue.6789
, pp. 907-913
-
-
Hewitt, G.1
-
40
-
-
1242299019
-
Genetic consequences of climatic oscillations in the Quaternary
-
Hewitt GM (2004) Genetic consequences of climatic oscillations in the Quaternary. Philos Trans R Soc Lond B 359(1442): 183-195.
-
(2004)
Philos Trans R Soc Lond B
, vol.359
, Issue.1442
, pp. 183-195
-
-
Hewitt, G.M.1
-
41
-
-
3142714474
-
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
-
Hey J, Nielsen R (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167(2): 747-760.
-
(2004)
Genetics
, vol.167
, Issue.2
, pp. 747-760
-
-
Hey, J.1
Nielsen, R.2
-
42
-
-
2642521485
-
Phylogenetic relationships of woodcreepers (Aves: Dendrocolaptinae) incongruence between molecular and morphological data
-
Irestedt M, Fjeldsa J, Ericson PGP (2004) Phylogenetic relationships of woodcreepers (Aves: Dendrocolaptinae) incongruence between molecular and morphological data. J Avian Biol 35(3): 280-288.
-
(2004)
J Avian Biol
, vol.35
, Issue.3
, pp. 280-288
-
-
Irestedt, M.1
Fjeldsa, J.2
Ericson, P.G.P.3
-
43
-
-
0033531736
-
Pleistocene effects on North American songbird evolution
-
Klicka J, Zink RM (1999) Pleistocene effects on North American songbird evolution. Proc R Soc Lond B 266: 695-700.
-
(1999)
Proc R Soc Lond B
, vol.266
, pp. 695-700
-
-
Klicka, J.1
Zink, R.M.2
-
44
-
-
70450281762
-
Statistical phylogeography
-
Knowles LL (2009) Statistical phylogeography. Annu Rev Ecol Evol Syst 40: 593-612.
-
(2009)
Annu Rev Ecol Evol Syst
, vol.40
, pp. 593-612
-
-
Knowles, L.L.1
-
45
-
-
33645108873
-
LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters
-
Kuhner MK (2006) LAMARC 2. 0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22(6): 768-770.
-
(2006)
Bioinformatics
, vol.22
, Issue.6
, pp. 768-770
-
-
Kuhner, M.K.1
-
46
-
-
41549108066
-
Mitochondrial DNA corroborates the species distinctiveness of the Planalto (Thamnophilus pelzelni Hellmayr, 1924) and the Sooretama (T. ambiguus Swainson, 1825) Slaty-antshrikes (Passeriformes: Thamnophilidae)
-
Lacerda DR, Marini MA, Santos FR (2007) Mitochondrial DNA corroborates the species distinctiveness of the Planalto (Thamnophilus pelzelni Hellmayr, 1924) and the Sooretama (T. ambiguus Swainson, 1825) Slaty-antshrikes (Passeriformes: Thamnophilidae). Braz J Biol 67: 873-882.
-
(2007)
Braz J Biol
, vol.67
, pp. 873-882
-
-
Lacerda, D.R.1
Marini, M.A.2
Santos, F.R.3
-
47
-
-
27944508664
-
Paleoclimate changes during the last 100,000 yr from a record in the Brazilian Atlantic rainforest region and interhemispheric comparison
-
Ledru MP, Rousseau DD, Cruz FW, Riccomini C, Karmann I, Martin L (2005) Paleoclimate changes during the last 100, 000 yr from a record in the Brazilian Atlantic rainforest region and interhemispheric comparison. Quat Res 64(3): 444-450.
-
(2005)
Quat Res
, vol.64
, Issue.3
, pp. 444-450
-
-
Ledru, M.P.1
Rousseau, D.D.2
Cruz, F.W.3
Riccomini, C.4
Karmann, I.5
Martin, L.6
-
48
-
-
67449163699
-
The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
-
Lemmon AR, Brown JM, Stanger-Hall K, Lemmon EM (2009) The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst Biol 58(1): 130-145.
-
(2009)
Syst Biol
, vol.58
, Issue.1
, pp. 130-145
-
-
Lemmon, A.R.1
Brown, J.M.2
Stanger-Hall, K.3
Lemmon, E.M.4
-
49
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25(11): 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, Issue.11
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
50
-
-
84857960825
-
Climatic oscillations shape the phylogeographical structure of Atlantic Forest fire-eye antbirds (Aves: Thamnophilidae)
-
Maldonado-Coelho M (2012) Climatic oscillations shape the phylogeographical structure of Atlantic Forest fire-eye antbirds (Aves: Thamnophilidae). Biol J Linn Soc 105: 900-924.
-
(2012)
Biol J Linn Soc
, vol.105
, pp. 900-924
-
-
Maldonado-Coelho, M.1
-
51
-
-
78651227304
-
Coalescent analysis of mtDNA indicates Pleistocene divergence among three species of howler monkey (Alouatta spp.) and population subdivision within the Atlantic Coastal Forest species, A. guariba
-
Martins FM, Gifalli-Iughetti C, Koiffman C, Harris E (2011) Coalescent analysis of mtDNA indicates Pleistocene divergence among three species of howler monkey (Alouatta spp.) and population subdivision within the Atlantic Coastal Forest species, A. guariba. Primates 52(1): 77-87.
-
(2011)
Primates
, vol.52
, Issue.1
, pp. 77-87
-
-
Martins, F.M.1
Gifalli-Iughetti, C.2
Koiffman, C.3
Harris, E.4
-
52
-
-
69049105204
-
Molecular phylogeny and biogeography of the eastern Tapaculos (Aves: Rhinocryptidae: Scytalopus, Eleoscytalopus): cryptic diversification in Brazilian Atlantic Forest
-
Mata H, Fontana CS, Maurício GN, Bornschein MR, de Vasconcelos MF, Bonatto SL (2009) Molecular phylogeny and biogeography of the eastern Tapaculos (Aves: Rhinocryptidae: Scytalopus, Eleoscytalopus): cryptic diversification in Brazilian Atlantic Forest. Mol Phylogenet Evol 53(2): 450-462.
-
(2009)
Mol Phylogenet Evol
, vol.53
, Issue.2
, pp. 450-462
-
-
Mata, H.1
Fontana, C.S.2
Maurício, G.N.3
Bornschein, M.R.4
de Vasconcelos, M.F.5
Bonatto, S.L.6
-
53
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
Minin VN, Bloomquist EW, Suchard MA (2008) Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol 25(7): 1459-1471.
-
(2008)
Mol Biol Evol
, vol.25
, Issue.7
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
55
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R (2005) Molecular signatures of natural selection. Annu Rev Genet 39(1): 197-218.
-
(2005)
Annu Rev Genet
, vol.39
, Issue.1
, pp. 197-218
-
-
Nielsen, R.1
-
56
-
-
61649119281
-
Statistical inferences in phylogeography
-
Nielsen R, Beaumont MA (2009) Statistical inferences in phylogeography. Mol Ecol 18(6): 1034-1047.
-
(2009)
Mol Ecol
, vol.18
, Issue.6
, pp. 1034-1047
-
-
Nielsen, R.1
Beaumont, M.A.2
-
57
-
-
0034967295
-
Distinguishing migration from isolation: a Markov chain Monte Carlo approach
-
Nielsen R, Wakeley J (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158(2): 885-896.
-
(2001)
Genetics
, vol.158
, Issue.2
, pp. 885-896
-
-
Nielsen, R.1
Wakeley, J.2
-
58
-
-
34249734745
-
Phylogeographic patterns, molecular and vocal differentiation, and species limits in Schiffornis turdina (Aves)
-
Nyari AS (2007) Phylogeographic patterns, molecular and vocal differentiation, and species limits in Schiffornis turdina (Aves). Mol Phylogenet Evol 44(1): 154-164.
-
(2007)
Mol Phylogenet Evol
, vol.44
, Issue.1
, pp. 154-164
-
-
Nyari, A.S.1
-
60
-
-
56549106522
-
Comparative phylogeography of the Rufous Gnateater (Conopophagidae) and Lesser Woodcreeper (Dendrocolaptidae): congruent history of two passerines from the south American Atlantic forest
-
Pessoa RO, Cabanne GS, Sari EH, Santos FR, Miyaki CY (2006) Comparative phylogeography of the Rufous Gnateater (Conopophagidae) and Lesser Woodcreeper (Dendrocolaptidae): congruent history of two passerines from the south American Atlantic forest. J Ornithol 147(5): 227-228.
-
(2006)
J Ornithol
, vol.147
, Issue.5
, pp. 227-228
-
-
Pessoa, R.O.1
Cabanne, G.S.2
Sari, E.H.3
Santos, F.R.4
Miyaki, C.Y.5
-
61
-
-
78149423210
-
Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure
-
Peter BM, Wegmann D, Excoffier L (2010) Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Mol Ecol 19(21): 4648-4660.
-
(2010)
Mol Ecol
, vol.19
, Issue.21
, pp. 4648-4660
-
-
Peter, B.M.1
Wegmann, D.2
Excoffier, L.3
-
63
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14(9): 817-818.
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
64
-
-
4043150941
-
-
American Ornithologists' Union. Accessed 29 Jan 2009
-
Remsen JV, Cadena CD, Jaramillo A, Nores M, Pacheco JF, Robbins MB, Schulenberg TS, Stiles FG, Stotz DF, Zimmer KJ (2009) A classification of the bird species of South America. American Ornithologists' Union. http://www. museum. lsu. edu/~Remsen/SACCBaseline. html. Accessed 29 Jan 2009.
-
(2009)
A classification of the bird species of South America
-
-
Remsen, J.V.1
Cadena, C.D.2
Jaramillo, A.3
Nores, M.4
Pacheco, J.F.5
Robbins, M.B.6
Schulenberg, T.S.7
Stiles, F.G.8
Stotz, D.F.9
Zimmer, K.J.10
-
65
-
-
27744586943
-
Historical biogeography and diversification within the Neotropical parrot genus Pionopsitta (Aves: Psittacidae)
-
Ribas CC, Gaban-Lima R, Miyaki CY, Cracraft J (2005) Historical biogeography and diversification within the Neotropical parrot genus Pionopsitta (Aves: Psittacidae). J Biogeogr 32(8): 1409-1427.
-
(2005)
J Biogeogr
, vol.32
, Issue.8
, pp. 1409-1427
-
-
Ribas, C.C.1
Gaban-Lima, R.2
Miyaki, C.Y.3
Cracraft, J.4
-
66
-
-
0347996147
-
Bird extinctions in Atlantic forest fragments of the Viçosa region, southeastern Brazil
-
Ribon R, Simon JE, De Mattos GT (2003) Bird extinctions in Atlantic forest fragments of the Viçosa region, southeastern Brazil. Conserv Biol 17(6): 1827-1839.
-
(2003)
Conserv Biol
, vol.17
, Issue.6
, pp. 1827-1839
-
-
Ribon, R.1
Simon, J.E.2
de Mattos, G.T.3
-
67
-
-
35348958892
-
Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses
-
Richards CL, Carstens BC, Knowles LL (2007) Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses. J Biogeogr 34(11): 1833-1845.
-
(2007)
J Biogeogr
, vol.34
, Issue.11
, pp. 1833-1845
-
-
Richards, C.L.1
Carstens, B.C.2
Knowles, L.L.3
-
68
-
-
36249028141
-
Estimating diversification rates from phylogenetic information
-
Ricklefs RE (2007) Estimating diversification rates from phylogenetic information. Trends Ecol Evol 22(11): 601-610.
-
(2007)
Trends Ecol Evol
, vol.22
, Issue.11
, pp. 601-610
-
-
Ricklefs, R.E.1
-
70
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12): 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
71
-
-
33745055970
-
Climate change and the origin of migratory pathways in the Swainson's thrush, Catharus ustulatus
-
Ruegg KC, Hijmans RJ, Moritz C (2006) Climate change and the origin of migratory pathways in the Swainson's thrush, Catharus ustulatus. J Biogeogr 33(7): 1172-1182.
-
(2006)
J Biogeogr
, vol.33
, Issue.7
, pp. 1172-1182
-
-
Ruegg, K.C.1
Hijmans, R.J.2
Moritz, C.3
-
72
-
-
84863432345
-
The latitudinal gradient in dispersal constraints: ecological specialization drives diversification in tropical birds
-
Salisbury CL, Seddon N, Cooney CR, Tobias JA (2012) The latitudinal gradient in dispersal constraints: ecological specialization drives diversification in tropical birds. Ecol Lett 15: 847-855.
-
(2012)
Ecol Lett
, vol.15
, pp. 847-855
-
-
Salisbury, C.L.1
Seddon, N.2
Cooney, C.R.3
Tobias, J.A.4
-
74
-
-
0024313579
-
Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F (1989) Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123(3): 585-595.
-
(1989)
Genetics
, vol.123
, Issue.3
, pp. 585-595
-
-
Tajima, F.1
-
75
-
-
77953136586
-
Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest
-
Thomé MTC, Zamudio KR, Giovanelli JGR, Haddad CFB, Baldiserra FA, Alexandrino J (2010) Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest. Mol Phylogenet Evol 55: 1018-1031.
-
(2010)
Mol Phylogenet Evol
, vol.55
, pp. 1018-1031
-
-
Thomé, M.T.C.1
Zamudio, K.R.2
Giovanelli, J.G.R.3
Haddad, C.F.B.4
Baldiserra, F.A.5
Alexandrino, J.6
-
76
-
-
29444451610
-
Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes
-
Voight BF, Adams AM, Frisse LA, Qian Y, Hudson RR, Di Rienzo A (2005) Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proc Natl Acad Sci USA 102(51): 18508-18513.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.51
, pp. 18508-18513
-
-
Voight, B.F.1
Adams, A.M.2
Frisse, L.A.3
Qian, Y.4
Hudson, R.R.5
di Rienzo, A.6
-
77
-
-
1842815250
-
Application of the one-migrant-per-generation rule to conservation and management
-
Wang JL (2004) Application of the one-migrant-per-generation rule to conservation and management. Conserv Biol 18(2): 332-343.
-
(2004)
Conserv Biol
, vol.18
, Issue.2
, pp. 332-343
-
-
Wang, J.L.1
-
78
-
-
43049101093
-
Calibrating the avian molecular clock
-
Weir JT, Schluter D (2008) Calibrating the avian molecular clock. Mol Ecol 17(10): 2321-2328.
-
(2008)
Mol Ecol
, vol.17
, Issue.10
, pp. 2321-2328
-
-
Weir, J.T.1
Schluter, D.2
-
79
-
-
78650464456
-
Scytalopus petrophilus (Rock Tapaculo): a new species from Minas Gerais, Brazil
-
Whitney BM, Vasconcelos MF, Silveira LF, Pacheco JF (2010) Scytalopus petrophilus (Rock Tapaculo): a new species from Minas Gerais, Brazil. Rev Bras Ornitol 18: 73-88.
-
(2010)
Rev Bras Ornitol
, vol.18
, pp. 73-88
-
-
Whitney, B.M.1
Vasconcelos, M.F.2
Silveira, L.F.3
Pacheco, J.F.4
-
80
-
-
34547737972
-
Compound tests for the detection of hitchhiking under positive selection
-
Zeng K, Shi S, Wut CI (2007) Compound tests for the detection of hitchhiking under positive selection. Mol Biol Evol 24(8): 1898-1908.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1898-1908
-
-
Zeng, K.1
Shi, S.2
Wut, C.I.3
|