Characterization of xylose-utilizing yeasts isolated from herbivore faeces in Thailand

ScienceAsia

Volumn 39, Issue 1, 2013, Pages 26-35

  Lorliam, Wanlapa ^a   Akaracharanya, Ancharida ^a   Jindamorakot, Sasitorn ^b   Suwannarangsee, Surisa ^b   Tanasupawat, Somboon ^a  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

Candida; Pichia; Sporopachydermia; Trichosporon; Xylose fermentation; Xylose reductase gene; Zygoascus

Indexed keywords

EID: 84874902635     PISSN: 15131874     EISSN: None     Source Type: Journal    
DOI: 10.2306/scienceasia1513-1874.2013.39.026     Document Type: Article

References (54)

1. Lee J (1997) Biological conversion of lignocellulosic biomass to ethanol. J Biotechnol 56, 1-24.
2. Jeffries TW, Alexander MA (1990) Production of ethanol from xylose by Candida shehatae grown under continuous or fed-batch condition. In: Kent Kirk T, Chang HM (eds) Biotechnology in Pulp and Paper Manufacture, Butterworth-Heineman, USA, pp 311-21.
3. Dien BS, Cotta MA, Jeffries TW (2003) Bacteria engineered for fuel ethanol production current status. Appl Microbiol Biotechnol 63, 258-66.
4. Byron CHC, Hung L (2007) Genetic improvement of Saccharomyces cerevisiae for xylose fermentation. Biotechnol Adv 25, 425-41.
5. Kutzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Leeuwenhoek 73, 331-71.
6. Barnett JA, Payne RW, Yarrow D (2000) Yeast Characteristics and Identification, 3rd edn, Cambridge Univ press, UK.
7. Nitiyon S, Boonmak C, Am-In S, Jindamorakot S, Kawasaki H, Yongmanitchai W, Limtong S (2011) Candida saraburiensis sp. nov. and Candida prachuapensis sp. nov., xylose-utilizing yeast species isolated in Thailand. Int J Syst Evol Microbiol 61, 462-8.
8. Cadete RM, Santos RO, Melo MA, Mouro A, Goncaleves DL, Stambuk BU, Gomes FCO, Lanchance MA, Rosa CA (2009) Spathaspora arboratiae sp. Nov., a xylose-fermentating yeast species isolated from rooting wood in Brazil. FEMS Yeast Res 9, 1338-42.
9. Jefferies TW, Kurtzman CP (1994) Strain selection, taxonomy, and genetics of xylose-fermenting yeasts. Enzym Microb Tech 16, 922-32.
10. Nguyen NH, Suh SO, Marshall CJ, BlackwellM(2006) Morphological and ecological similarities: wood boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passalidarum gen. sp. nov. and Candida jeffriesii sp. nov. Mycol Res 110, 1232-41.
11. Jeffries TW (2006) Engineering yeast for xylose metabolism. Curr Opin Biotechnol 17, 320-6.
12. Taniguchi M, Itaya T, Tohma T, FujiiM(1997) Ethanol production from a mixture of glucose and xylose by a novel co-culture system with two fermentors and two microfiltration modules. J Ferment Bioeng 84, 59-64.
13. Agbogbo FK, Coward-Kelly G, Torry-Smith M, Wenger KS (2006) Fermentation of glucose/xylose mixture using Pichia stipitis. Process Biochem 41, 2333-6.
14. Watanabe S, Saleh AA, Pack SP, Annaluru N, Kodaki T, Makino K (2007) Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein engineered NADH-preferring xylose reductase from Pichia stipitis. Microbiology 153, 3044-54.
15. Jefferies TW, Jin YS (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. Appl Biochem Biotechnol 63, 495-509.
16. Verduyn C, Van Kleef R, Frank J, Schreuder H, van Dijken VP, Scheffers WA (1985) Properties of the NAD(P)H-dependent xylose reductase from the xylose-fermenting yeast. Pichia stipitis. Biochem J 226, 669-77.
17. Zhan B, Zhang L, Wang D, Gao X, Hong J (2011) Identification of xylose reductase gene in the xylose metabolic pathway of Kluyveromyces marxianus NBRC177. J Ind Microbiol Biotechnol 38, 2001-11.
18. Rizzi M, Harwart K, Erlemann P, Buithanh NA, Dellweg H (1989) Purification andproperties of the NAD+xylitol dehydrogenase from the yeast Pichia stipitis. J Ferment Bioeng 67, 20-4.
19. Jeppsson H, Yu S, Hahn-Hagerdal B (1996) Xylulose and glucose fermentation by Saccharomyces cerevisiae in chemostat culture. Appl Environ Microbiol 62, 1705-9.
20. Bengtsson O, Hahn-Hägerdal B, Gorwa-Grauslund MF (2009) Xylose reductase from Pichia stipitis with altered coenzyme preference improves ethanolic xylose fermentation by recombinant Saccharomyces cerevisiae. Biotechnol Biofuels 2, 1-10.
21. Van Vleet JH, Jeffries TW (2009) Yeast metabolic engineering for hemicellulosic ethanol production. Curr Opin Biotechnol 20, 300-6.
22. Urubschurov V, Janczyk P, Pieper R, Souffrant WB (2008) Biological diversity of yeasts in the gastrointestinal tract of weaned piglets kept under different farm conditions. FEMS Yeast Res 8, 1349-56.
23. Kwon SG, Park SW, Oh DK (2006) Increase of xylitol productivity by cell-recycle fermentation of Candida tropicalis using submerged membrane bioreactor. J Biosci Bioeng 101, 13-8.
24. Lachance MA, Boekhout GS, Fell JW, Kurtzman CP (1923) Candida Berkhout. In: Kurtzman CP, Fell JW, Boekhout GS (eds) The Yeasts, a Taxonomic Study, 5th edn, Elsevier, Amsterdam, pp 987-1278.
25. Kurtzman CP (1998) Pichia E.C. Hansen emend. Kurtzman. In: Kurtzman CP, Fell JW (eds) The Yeasts, A Taxonomic Study, 4th edn, Elsevier, Amsterdam, pp 273-352.
26. Molnar O, Schatzmayr G, Fuchs E, Prillinger H (2004) Trichosporon mycotoxinivorans sp. nov., a new yeast species useful in biological detoxification of various mycotoxins. Syst Appl Microbiol 27, 661-71.
27. Rodrigues de Miranda L (1984) Sporopachydermia Rodrigues de Miranda. In: Kreger-van Rij NJW (ed) The Yeasts, A Taxonomic Study, 3rd edn, Elsevier, Amsterdam, pp 427-30.
28. Smith MTh Robert V, Poot GA,Epping W, de Cock AWAM (2005) Taxonomy and phylogeny of the ascomycetous yeast genus Zygoascus, with proposal of Zygoascus meyerae sp. nov. and related anamorphic varieties. Int J Syst Evol Microbiol 55, 1353-63.
29. Yarrow D (1998) Methods for the isolation, maintenance and identification of yeasts. In: Kurtzman CP, Fell JW (eds) The Yeasts, a Taxonomic Study, 4th edn, Elsevier, Amsterdam, pp 77-100.
30. Van der Walt JP (1957) Three new sporogenous yeasts from soil. Antonie Leeuwenhoek 23, 23-9.
31. O'Donnell K (1993) Fusarium and its near relatives. In: Reynolds DR, Taylor JW (eds) The Fungal Holomorph - Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics. Wallingford, UK, pp 225-33.
32. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miler W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-402.
33. Thompson JD, Gibson TJ, Pleniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-82.
34. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-20.
35. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4, 406-25.
36. Felsenstein J (1988) Phylogenic from molecular sequences: inference and reliability. Annu Rev Genet 22, 521-65.
37. Akaracharanya A, Kesornsit J, Leepipatpiboon N, Srinorakutara T, Kitpreechavanich V, Tolieng V (2011) Evaluation of the waste from cassava starch production as a substrate for ethanol fermentation by Saccharomyces cerevisiae. Ann Microbiol 61, 431-6.
38. Choi JH, Moon KH, Ryu YW, Seo JH (2000) Production of xylitol in cell recycle fermentation of Candida tropicalis. Biotechnol Lett 22, 1625-8.
39. Kurtzman CP, Dien BS (1998) Candida arabinofermentas, a new L-arabinose fermenting yeast. Antonie Leeuwenhoek 74, 237-43.
40. Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual, 3rd edn, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
41. Kurtzman CP, Robnett CJ, Basehoar-Powers E (2008) Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene phylogenetic analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Res 8, 939-54.
42. Margaritis A, Bajpai P (1982) Direct fermentation of d-Xylose to ethanol by Kluyveromyces marxianus strains. Appl Environ Microbiol 44, 1039-41.
43. Hou X (2012) Anaerobic xylose fermentation by Spathaspora passalidarum. Appl Microbiol Biotechnol 94, 205-14.
44. El-Baz AF, Shetaia YM, Elkhouli RR (2011) Xylitol production by Candida tropicalis under different statistically optimized growth conditions. Afr J Biotechnol 10, 15353-63.
45. Furlan SA, de Castro HF (2001) Xylitol production by Candida parapsilosis under fed-batch culture. Braz Arch Biol Tech 44,125-8.
46. Praksham RS, Sreenivas Rao R, Hobbs PJ (2009) Current trends in biotechnological production of xylitol and future prospects. Curr Trends Biotechnol Pharm 3, 8-36.
47. Silva CJSM, Mussatto SI, Roberto IC (2006) Study of xylitol production by Candida guilliermondii on a bench bioreactor. J Food Eng 75, 115-9.
48. Sirisansaneeyakul S, Staniszewski M, Rizzi M (1995) Screening of yeasts for production of xylitol from Dxylose. J Ferment Bioeng 80, 565-70.
49. Guo C, Zhao C, He P, Lu D, Shen A, Jiang N (2006) Screening and characterization of yeasts for xylitol production. J Appl Microbiol 101, 1096-104.
50. Sreenivas Rao RS, Bhadra B, Shivaji S (2007) Isolation and characterization of xylitol-producing yeasts from the gut of colleopteran insects. Curr Microbiol 55, 441-6.
51. Ho NWY, Lin FP, Huang S, Andrews PC, Tsao TC (1990) Purification, characterization, and amino terminal sequence of xylose reductase from Candida shehatae. Enzym Microb Tech 12, 33-9.
52. Jeon YJ, Shin HS,Roger PL (2011) Xylitol production from a mutant strain of Candida tropicalis. Lett Appl Microbiol 53, 106-13.
53. Kavanagh K, Klimacek M, Nidetzky B, Wilson DK (2003) Structure of xylose reductase bound to NAD+ and the basis for single and dual co-substrate specificity in family 2 aldo-keto reductase. Biochem J 15, 319-26.
54. Lee JK, Koo BS, Kim SY (2003) Cloning and characterization of xyl1 gene, encoding an NADH-Preferring xylose reductase from Candida parapsilosis, and its function expression in Candida tropicalis. Appl Environ Microbiol 69, 6179-88.