A pentaplex PCR assay for the detection and differentiation of shigella species

BioMed Research International

Volumn 2013, Issue , 2013, Pages

  Ojha, Suvash Chandra ^a   Yean Yean, Chan ^a   Ismail, Asma ^b   Banga Singh, Kirnpal Kaur ^a  

^a SCHOOL OF MEDICAL SCIENCES   (Malaysia)

^b INSTITUTE FOR RESEARCH IN MOLECULAR MEDICINE INFORMM   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; BACTERIAL DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM DETECTION; CONTROLLED STUDY; CROSS REACTION; DIARRHEA; FECES ANALYSIS; GENE AMPLIFICATION; GENETIC VARIABILITY; INCUBATION TEMPERATURE; INCUBATION TIME; NONHUMAN; PENTAPLEX POLYMERASE CHAIN REACTION; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SHIGELLA DYSENTERIAE; SHIGELLA FLEXNERI; SHIGELLA SONNEI; VALIDATION PROCESS; DNA SEQUENCE; FECES; GRAM NEGATIVE BACTERIUM; HUMAN; ISOLATION AND PURIFICATION; MALAYSIA; METHODOLOGY; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; SHIGELLA; SPECIES DIFFERENCE; STEM CELL;

BACTERIOLOGICAL TECHNIQUES; DIARRHEA; DNA, BACTERIAL; FECES; GRAM-NEGATIVE BACTERIA; HUMANS; MALAYSIA; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SHIGELLA; SPECIES SPECIFICITY; STEM CELLS;

EID: 84874865192     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2013/412370     Document Type: Article

References (39)

1. Bennish M. L., Wojtyniak B. J., Mortality due to shigellosis: community and hospital data. Reviews of Infectious Diseases 1991 13 supplement 4 S245 S251 2-s2.0-0026084855
2. Niyogi S. K., Shigellosis. Journal of Microbiology 2005 43 2 133 143 (Pubitemid 40720615)
3. Hiranrattana A., Mekmullica J., Chatsuwan T., Pancharoen C., Thisyakorn U., Childhood shigellosis at King Chulalongkorn Memorial Hospital, Bangkok, Thailand: a 5-year review (1996-2000). Southeast Asian Journal of Tropical Medicine and Public Health 2005 36 3 683 685 2-s2.0-24944564699 (Pubitemid 41316794)
4. Faruque S. M., Khan R., Kamruzzaman M., Yamasaki S., Ahmad Q. S., Azim T., Nair G. B., Takeda Y., Sack D. A., Isolation of Shigella dysenteriae type 1 and S. flexneri strains from surface waters in Bangladesh: comparative molecular analysis of environmental Shigella isolates versus clinical strains. Applied and Environmental Microbiology 2002 68 8 3908 3913 2-s2.0-0036328919 10.1128/AEM.68.8.3908-3913.2002 (Pubitemid 34836702)
5. Singh K. K. B., Ojha S. C., Deris Z. Z., Rahman R. A., A 9-year study of shigellosis in Northeast Malaysia: antimicrobial susceptibility and shifting species dominance. Journal of Public Health 2011 19 3 231 236 2-s2.0-79958054868 10.1007/s10389-010-0384-0
6. Oyofo B. A., Lesmana M., Subekti D., Tjaniadi P., Larasati W., Putri M., Simanjuntak C. H., Punjabi N. H., Santoso W., Muzahar, Sukarma, Sriwati, Sarumpaet S., Abdi M., Tjindi R., Ma'ani H., Sumardiati A., Handayani H., Campbell J. R., Alexander W. K., Beecham H. J., Corwin A. L., Surveillance of bacterial pathogens of diarrhea disease in Indonesia. Diagnostic Microbiology and Infectious Disease 2002 44 3 227 234 2-s2.0-0036864766 10.1016/S0732- 8893(02)00454-6 (Pubitemid 35454097)
7. Sur D., Ramamurthy T., Deen J., Bhattacharya S. K., Shigellosis: challenges & management issues. The Indian Journal of Medical Research 2004 120 5 454 462 2-s2.0-11044234747 (Pubitemid 40044915)
8. Ashkenazi S., Shigella infections in children: new insights. Seminars in Pediatric Infectious Diseases 2004 15 4 246 252 2-s2.0-5644254821 10.1053/j.spid.2004.07.005 (Pubitemid 39371105)
9. Kodati V. L., Govindan S., Movva S., Ponnala S., Hasan Q., Role of Shigella infection in endometriosis: a novel hypothesis. Medical Hypotheses 2008 70 2 239 243 2-s2.0-37349068137 10.1016/j.mehy.2007.06.012 (Pubitemid 350297625)
10. Warren B. R., Parish M. E., Schneider K. R., Shigella as a foodborne pathogen and current methods for detection in food. Critical Reviews in Food Science and Nutrition 2006 46 7 551 567 2-s2.0-33748563138 10.1080/ 10408390500295458 (Pubitemid 44371366)
11. World Health Organization, Initiative for Vaccine Research (IVR). Diarrhoeal Diseases, Shigellosis 2009. http://www.who.int/vaccine-research/ diseases/diarrhoeal/en/index6.html
12. Ozuah P. O., Adam H., Shigella update. Pediatrics in Review 1998 19 3 100 2-s2.0-0032014705
13. Shears P., Shigella infections. Annals of Tropical Medicine and Parasitology 1996 90 2 105 114 (Pubitemid 26140438)
14. Edwards B., Salmonella and Shigella species. Clinics in Laboratory Medicine 1999 19 3 469 487 (Pubitemid 29453617)
15. Khalil K., Khan S. R., Mazhar K., Kaijser B., Lindblom G. B., Occurrence and susceptibility to antibiotics of Shigella species in stools of hospitalized children with bloody diarrhea in Pakistan. The American Journal of Tropical Medicine and Hygiene 1998 58 6 800 803 2-s2.0-0031780487 (Pubitemid 28307402)
16. Dutta S., Chatterjee A., Dutta P., Rajendran K., Roy S., Pramanik K. C., Bhattacharya S. K., Sensitivity and performance characteristics of a direct PCR with stool samples in comparison to conventional techniques for diagnosis of Shigella and enteroinvasive Escherichia coli infection in children with acute diarrhoea in Calcutta, India. Journal of Medical Microbiology 2001 50 8 667 674 2-s2.0-0034914055 (Pubitemid 32664896)
17. Islam M. S., Hossain M. S., Hasan M. K., Rahman M. M., Fuchs G., Mahalanabis D., Baqui A. H., Albert M. J., Detection of Shigella e from stools of dysentery patients by culture and polymerase chain reaction techniques. Journal of Diarrhoeal Diseases Research 1998 16 4 248 251 2-s2.0-0032233829
18. Houng H. S. H., Sethabutr O., Echeverria P., A simple polymerase chain reaction technique to detect and differentiate Shigella and enteroinvasive Escherichia coli in human feces. Diagnostic Microbiology and Infectious Disease 1997 28 1 19 25 2-s2.0-0030847214 10.1016/S0732-8893(97)89154-7 (Pubitemid 27314866)
19. Villalobo E., Torres A., PCR for detection of Shigella spp. in mayonnaise. Applied and Environmental Microbiology 1998 64 4 1242 1245 2-s2.0-0031977258 (Pubitemid 28188378)
20. Thong K. L., Hoe S. L. L., Puthucheary S. D., Yasin R. M., Detection of virulence genes in Malaysian Shigella species by multiplex PCR assay. BMC Infectious Diseases 2005 5 8 1 7 2-s2.0-25444523800 10.1186/1471-2334-5-8 (Pubitemid 41363818)
21. GenBank,. http://www.ncbi.nlm.nih.gov/
22. GeneDoc,. http://www.nrbsc.org/downloads/
23. Molecular Diagnostic Methods for Infectious Diseases, Approved Guideline (CLSI MM3-A2) 2006 26 2nd
24. Schuch R., Maurelli A. T., Virulence plasmid instability in Shigella flexneri 2a is induced by virulence gene expression. Infection and Immunity 1997 65 9 3686 3692 2-s2.0-0030929540 (Pubitemid 27398126)
25. Aranda K. R. S., Fagundes-Neto U., Scaletsky I. C. A., Evaluation of multiplex PCRs for diagnosis of infection with diarrheagenic Escherichia coli and Shigella spp. Journal of Clinical Microbiology 2004 42 12 5849 5853 2-s2.0-10844230042 10.1128/JCM.42.12.5849-5853.2004 (Pubitemid 39664377)
26. Luo W., Wang S., Peng X., Identification of shiga toxin-producing bacteria by a new immuno-capture toxin gene PCR. FEMS Microbiology Letters 2002 216 1 39 42 2-s2.0-0037195376 10.1016/S0378-1097(02)01005-4 (Pubitemid 35335577)
27. Thiem V. D., Sethabutr O., von Seidlein L., van Tung T., Canh D. G., Chien B. T., Tho L. H., Lee H., Houng H. S., Hale T. L., Clemens J. D., Mason C., Trach D. D., Detection of Shigella by a PCR assay targeting the ipaH gene suggests increased prevalence of shigellosis in Nha Trang, Vietnam. Journal of Clinical Microbiology 2004 42 5 2031 2035 2-s2.0-2442568863 10.1128/JCM.42.5. 2031-2035.2004 (Pubitemid 38637819)
28. Peng X., Luo W., Zhang J., Wang S., Lin S., Rapid detection of Shigella species in environmental sewage by an immunocapture PCR with universal primers. Applied and Environmental Microbiology 2002 68 5 2580 2583 2-s2.0-0036254441 10.1128/AEM.68.5.2580-2583.2002 (Pubitemid 34477862)
29. Theron J., Morar D., Du Preez M., Brözel V. S., Venter S. N., A sensitive seminested PCR method for the detection of Shigella in spiked environmental water samples. Water Research 2001 35 4 869 874 2-s2.0-0035284518 10.1016/S0043-1354(00)00348-1 (Pubitemid 32011191)
30. Jackson M. P., Detection of shiga toxin-producing Shigella dysenteriae type 1 and Escherichia coli by using polymerase chain reaction with incorporation of digoxigenin-11-dUTP. Journal of Clinical Microbiology 1991 29 9 1910 1914 2-s2.0-0026051698
31. Kingombe C. I. B., Cerqueira-Campos M. L., Farber J. M., Molecular strategies for the detection, identification, and differentiation between enteroinvasive Escherichia coli and Shigella spp. Journal of Food Protection 2005 68 2 239 245 2-s2.0-13544272785 (Pubitemid 40218125)
32. Sethabutr O., Venkatesan M., Yam S., Pang L. W., Smoak B. L., Sang W. K., Echeverria P., Taylor D. N., Isenbarger D. W., Detection of PCR products of the ipaH gene from Shigella and enteroinvasive Escherichia coli by enzyme linked immunosorbent assay. Diagnostic Microbiology and Infectious Disease 2000 37 1 11 16 2-s2.0-0034050745 10.1016/S0732-8893(00)00122-X (Pubitemid 30224517)
33. Call D. R., Challenges and opportunities for pathogen detection using DNA microarrays. Critical Reviews in Microbiology 2005 31 2 91 99 2-s2.0-19844379463 10.1080/10408410590921736 (Pubitemid 40762632)
34. Farfán M. J., Garay T. A., Prado C. A., Filliol I., Ulloa M. T., Toro C. S., A new multiplex PCR for differential identification of Shigella flexneri and Shigella sonnei and detection of Shigella virulence determinants. Epidemiology and Infection 2010 138 4 525 533 2-s2.0-77949398841 10.1017/S0950268809990823
35. Gómez-Duarte O. G., Bai J., Newell E., Detection of Escherichia coli, Salmonella spp., Shigella spp., Yersinia enterocolitica, Vibrio cholerae, and Campylobacter spp. enteropathogens by 3-reaction multiplex polymerase chain reaction. Diagnostic Microbiology and Infectious Disease 2009 63 1 1 9 2-s2.0-57349187741 10.1016/j.diagmicrobio.2008.09.006
36. Rossen L., Nørskov P., Holmstrøm K., Rasmussen O., Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions. International Journal of Food Microbiology 1992 17 1 37 45 (Pubitemid 23000398)
37. Wilson I., Inhibition and facilitation of nucleic acid amplification. Applied and Environmental Microbiology 1997 63 10 3741 3751 (Pubitemid 27411322)
38. Taylor W. I., Schelhart D., Effect of temperature on transport and plating media for enteric pathogens. Journal of Clinical Microbiology 1975 2 4 281 286 2-s2.0-0016561866
39. Yavzori M., Cohen D., Wasserlauf R., Ambar R., Rechavi G., Ashkenazi S., Identification of Shigella species in stool specimens by DNA amplification of different loci of the Shigella virulence plasmid. European Journal of Clinical Microbiology and Infectious Diseases 1994 13 3 232 237 2-s2.0-0028355198 (Pubitemid 24118342)