-
1
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case, D. A.; Cheatham, T. E.; Darden, T.; Gohlke, H.; Luo, R.; Merz, K. M.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods, R. J. The Amber biomolecular simulation programs J. Comput. Chem. 2005, 26, 1668-1688
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
2
-
-
0242443693
-
Force fields for protein simulations
-
Ponder, J. W.; Case, D. A. Force fields for protein simulations Adv. Prot. Chem. 2003, 66, 27-85
-
(2003)
Adv. Prot. Chem.
, vol.66
, pp. 27-85
-
-
Ponder, J.W.1
Case, D.A.2
-
3
-
-
67650500988
-
CHARMM: The biomolecular simulation program
-
Brooks, B. R.; Brooks, C. L.; Mackerell, A. D.; Nilsson, L.; Petrella, R. J.; Roux, B.; Won, Y.; Archontis, G.; Bartels, C.; Boresch, S.; Caflisch, A.; Caves, L.; Cui, Q.; Dinner, A. R.; Feig, M.; Fischer, S.; Gao, J.; Hodoscek, M.; Im, W.; Kuczera, K.; Lazaridis, T.; Ma, J.; Ovchinnikov, V.; Paci, E.; Pastor, R. W.; Post, C. B.; Pu, J. Z.; Schaefer, M.; Tidor, B.; Venable, R. M.; Woodcock, H. L.; Wu, X.; Yang, W.; York, D. M.; Karplus, M. CHARMM: the biomolecular simulation program J. Comput. Chem. 2009, 30, 1545-1614
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks, C.L.2
MacKerell, A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
Caflisch, A.11
Caves, L.12
Cui, Q.13
Dinner, A.R.14
Feig, M.15
Fischer, S.16
Gao, J.17
Hodoscek, M.18
Im, W.19
Kuczera, K.20
Lazaridis, T.21
Ma, J.22
Ovchinnikov, V.23
Paci, E.24
Pastor, R.W.25
Post, C.B.26
Pu, J.Z.27
Schaefer, M.28
Tidor, B.29
Venable, R.M.30
Woodcock, H.L.31
Wu, X.32
Yang, W.33
York, D.M.34
Karplus, M.35
more..
-
4
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
-
Oostenbrink, C.; Villa, A.; Mark, A. E.; Van Gunsteren, W. F. A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6 J. Comput. Chem. 2004, 25, 1656-1676
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
5
-
-
0035913529
-
Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides
-
Kaminski, G. A.; Friesner, R. A.; Tirado-Rives, J.; Jorgensen, W. L. Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides J. Phys. Chem. B 2001, 105, 6474-6487
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
6
-
-
0001195575
-
On the Determination of Molecular Fields. II. from the Equation of State of a Gas
-
Jones, J. E. On the Determination of Molecular Fields. II. From the Equation of State of a Gas Proc. R. Soc. London, Ser. A 1924, 106, 463-477
-
(1924)
Proc. R. Soc. London, Ser. A
, vol.106
, pp. 463-477
-
-
Jones, J.E.1
-
7
-
-
77749298172
-
Current Status of the AMOEBA Polarizable Force Field
-
Ponder, J. W.; Wu, C.; Ren, P.; Pande, V. S.; Chodera, J. D.; Schnieders, M. J.; Haque, I.; Mobley, D. L.; Lambrecht, D. S.; DiStasio, R. A.; Head-Gordon, M.; Clark, G. N. I.; Johnson, M. E.; Head-Gordon, T. Current Status of the AMOEBA Polarizable Force Field J. Phys. Chem. B 2010, 114, 2549-2564
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 2549-2564
-
-
Ponder, J.W.1
Wu, C.2
Ren, P.3
Pande, V.S.4
Chodera, J.D.5
Schnieders, M.J.6
Haque, I.7
Mobley, D.L.8
Lambrecht, D.S.9
Distasio, R.A.10
Head-Gordon, M.11
Clark, G.N.I.12
Johnson, M.E.13
Head-Gordon, T.14
-
8
-
-
80053994130
-
Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules
-
Ren, P.; Wu, C.; Ponder, J. Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules J. Chem. Theory Comput. 2011, 7, 3143-3161
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 3143-3161
-
-
Ren, P.1
Wu, C.2
Ponder, J.3
-
9
-
-
50549084665
-
Tailor-Made Force Fields for Crystal-Structure Prediction
-
Neumann, M. A. Tailor-Made Force Fields for Crystal-Structure Prediction J. Phys. Chem. B 2008, 112, 9810-9829
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 9810-9829
-
-
Neumann, M.A.1
-
10
-
-
36649010414
-
Anisotropic, Polarizable Molecular Mechanics Studies of Inter- and Intramolecular Interactions and Ligand-Macromolecule Complexes. A Bottom-Up Strategy
-
Gresh, N.; Cisneros, G. A.; Darden, T. A.; Piquemal, J.-P. Anisotropic, Polarizable Molecular Mechanics Studies of Inter- and Intramolecular Interactions and Ligand-Macromolecule Complexes. A Bottom-Up Strategy J. Chem. Theory Comput. 2007, 3, 1960-1986
-
(2007)
J. Chem. Theory Comput.
, vol.3
, pp. 1960-1986
-
-
Gresh, N.1
Cisneros, G.A.2
Darden, T.A.3
Piquemal, J.-P.4
-
11
-
-
84860316771
-
From quantum mechanics to force fields: New methodologies for the classical simulation of complex systems
-
Piquemal, J.-P.; Jordan, K. D. From quantum mechanics to force fields: new methodologies for the classical simulation of complex systems Theor. Chem. Acc. 2012, 131
-
(2012)
Theor. Chem. Acc.
, pp. 131
-
-
Piquemal, J.-P.1
Jordan, K.D.2
-
12
-
-
77954960270
-
Modelling organic crystal structures using distributed multipole and polarizability-based model intermolecular potentials
-
Price, S. L.; Leslie, M.; Welch, G. W. A.; Habgood, M.; Price, L. S.; Karamertzanis, P. G.; Day, G. M. Modelling organic crystal structures using distributed multipole and polarizability-based model intermolecular potentials Phys. Chem. Chem. Phys. 2010, 12, 8478-8490
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 8478-8490
-
-
Price, S.L.1
Leslie, M.2
Welch, G.W.A.3
Habgood, M.4
Price, L.S.5
Karamertzanis, P.G.6
Day, G.M.7
-
13
-
-
52149095877
-
A molecular dynamics program to use distributed multipole electrostatic models to simulate the dynamics of organic crystals
-
Leslie, M. A molecular dynamics program to use distributed multipole electrostatic models to simulate the dynamics of organic crystals Mol. Phys. 2008, 106, 1567-1578
-
(2008)
Mol. Phys.
, vol.106
, pp. 1567-1578
-
-
Leslie, M.1
-
14
-
-
67349163775
-
Higher order multipole moments for molecular dynamics simulations
-
Plattner, N.; Meuwly, M. Higher order multipole moments for molecular dynamics simulations J. Mol. Model. 2009, 15, 687-694
-
(2009)
J. Mol. Model.
, vol.15
, pp. 687-694
-
-
Plattner, N.1
Meuwly, M.2
-
15
-
-
84862574161
-
Atomic multipoles: Electrostatic potential fit, local reference axis systems, and conformational dependence
-
Kramer, C.; Gedeck, P.; Meuwly, M. Atomic multipoles: Electrostatic potential fit, local reference axis systems, and conformational dependence J. Comput. Chem. 2012, 33, 1673-1688
-
(2012)
J. Comput. Chem.
, vol.33
, pp. 1673-1688
-
-
Kramer, C.1
Gedeck, P.2
Meuwly, M.3
-
16
-
-
84863969139
-
Polarization-induced s-holes and hydrogen bonding
-
Hennemann, M.; Murray, J. S.; Politzer, P.; Riley, K. E.; Clark, T. Polarization-induced s-holes and hydrogen bonding J. Mol. Model. 2012, 18, 2461-2469
-
(2012)
J. Mol. Model.
, vol.18
, pp. 2461-2469
-
-
Hennemann, M.1
Murray, J.S.2
Politzer, P.3
Riley, K.E.4
Clark, T.5
-
17
-
-
80053422148
-
Aqueous Imidazole Solutions: A Structural Perspective from Simulations with High-Rank Electrostatic Multipole Moments
-
Liem, S. Y.; Shaik, M. S.; Popelier, P. L. A. Aqueous Imidazole Solutions: A Structural Perspective from Simulations with High-Rank Electrostatic Multipole Moments J. Phys. Chem. B 2011, 115, 11389-11308
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 11389-11308
-
-
Liem, S.Y.1
Shaik, M.S.2
Popelier, P.L.A.3
-
18
-
-
72949109178
-
Application of multipolar charge models and molecular dynamics simulations to study stark shifts in inhomogeneous electric fields
-
Devereux, M.; Plattner, N.; Meuwly, M. Application of multipolar charge models and molecular dynamics simulations to study stark shifts in inhomogeneous electric fields J. Phys. Chem. A 2009, 113, 13199-13209
-
(2009)
J. Phys. Chem. A
, vol.113
, pp. 13199-13209
-
-
Devereux, M.1
Plattner, N.2
Meuwly, M.3
-
19
-
-
41649119610
-
The role of higher CO-multipole moments in understanding the dynamics of photodissociated carbonmonoxide in myoglobin
-
Plattner, N.; Meuwly, M. The role of higher CO-multipole moments in understanding the dynamics of photodissociated carbonmonoxide in myoglobin Biophys. J. 2008, 94, 2505-2515
-
(2008)
Biophys. J.
, vol.94
, pp. 2505-2515
-
-
Plattner, N.1
Meuwly, M.2
-
20
-
-
84864656586
-
A test of improved force field parameters for urea: Molecular-dynamics simulations of urea crystals
-
Özpinar, G. A.; Beierlein, F. R.; Peukert, W.; Zahn, D.; Clark, T. A test of improved force field parameters for urea: molecular-dynamics simulations of urea crystals J. Mol. Model. 2012, 18, 3455-3466
-
(2012)
J. Mol. Model.
, vol.18
, pp. 3455-3466
-
-
Özpinar, G.A.1
Beierlein, F.R.2
Peukert, W.3
Zahn, D.4
Clark, T.5
-
21
-
-
77949806524
-
Force Field Optimization using Dynamics and Ensemble Averaged Data: Vibrational Spectra and Relaxation in Bound MbCO
-
Devereux, M.; Meuwly, M. Force Field Optimization using Dynamics and Ensemble Averaged Data: Vibrational Spectra and Relaxation in Bound MbCO J. Chem. Inf. Model. 2010, 50, 349-357
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 349-357
-
-
Devereux, M.1
Meuwly, M.2
-
22
-
-
0034724422
-
Accurate protein crystallography at ultra-high resolution: Valence electron distribution in crambin
-
Jelsch, C.; Teeter, M. M.; Lamzin, V.; Pichon-Pesme, V.; Blessing, R. H.; Lecomte, C. Accurate protein crystallography at ultra-high resolution: Valence electron distribution in crambin Proc. Natl. Acad. Sci. U. S. A. 2000, 97, 3171-3176
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 3171-3176
-
-
Jelsch, C.1
Teeter, M.M.2
Lamzin, V.3
Pichon-Pesme, V.4
Blessing, R.H.5
Lecomte, C.6
-
23
-
-
11644266970
-
Electronic Population Analysis on LCAO[Single Bond]MO Molecular Wave Functions. i
-
Mulliken, R. S. Electronic Population Analysis on LCAO[Single Bond]MO Molecular Wave Functions. I J. Chem. Phys. 1955, 23, 1833-1841
-
(1955)
J. Chem. Phys.
, vol.23
, pp. 1833-1841
-
-
Mulliken, R.S.1
-
24
-
-
0003468774
-
-
unabridged unaltered republication of the 1st ed. originally published in New York, 1989; Dover Publ. Mineola, NY.
-
Szabo, A.; Ostlund, N. S. Modern Quantum Chemistry Introduction to Advanced Electronic Structure Theory, unabridged unaltered republication of the 1st ed., originally published in New York, 1989; Dover Publ.: Mineola, NY, 1996.
-
(1996)
Modern Quantum Chemistry Introduction to Advanced Electronic Structure Theory
-
-
Szabo, A.1
Ostlund, N.S.2
-
25
-
-
84986468608
-
An approach to computing electrostatic charges for molecules
-
Singh, U. C.; Kollman, P. A. An approach to computing electrostatic charges for molecules J. Comput. Chem. 1984, 5, 129-145
-
(1984)
J. Comput. Chem.
, vol.5
, pp. 129-145
-
-
Singh, U.C.1
Kollman, P.A.2
-
26
-
-
84986513567
-
Determining atom-centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis
-
Breneman, C. M.; Wiberg, K. B. Determining atom-centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis J. Comput. Chem. 1990, 11, 361-373
-
(1990)
J. Comput. Chem.
, vol.11
, pp. 361-373
-
-
Breneman, C.M.1
Wiberg, K.B.2
-
27
-
-
0001475763
-
Distributed multipole analysis, or how to describe a molecular charge distribution
-
Stone, A. Distributed multipole analysis, or how to describe a molecular charge distribution Chem. Phys. Lett. 1981, 83, 233-239
-
(1981)
Chem. Phys. Lett.
, vol.83
, pp. 233-239
-
-
Stone, A.1
-
29
-
-
0038626673
-
-
Revision C.02; Gaussian, Inc. Wallingford, CT.
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A., Jr.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Gaussian 03, Revision C.02; Gaussian, Inc.: Wallingford, CT, 2004.
-
(2004)
Gaussian 03
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery Jr., J.A.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
Millam, J.M.11
Iyengar, S.S.12
Tomasi, J.13
Barone, V.14
Mennucci, B.15
Cossi, M.16
Scalmani, G.17
Rega, N.18
Petersson, G.A.19
Nakatsuji, H.20
Hada, M.21
Ehara, M.22
Toyota, K.23
Fukuda, R.24
Hasegawa, J.25
Ishida, M.26
Nakajima, T.27
Honda, Y.28
Kitao, O.29
Nakai, H.30
Klene, M.31
Li, X.32
Knox, J.E.33
Hratchian, H.P.34
Cross, J.B.35
Bakken, V.36
Adamo, C.37
Jaramillo, J.38
Gomperts, R.39
Stratmann, R.E.40
Yazyev, O.41
Austin, A.J.42
Cammi, R.43
Pomelli, C.44
Ochterski, J.W.45
Ayala, P.Y.46
Morokuma, K.47
Voth, G.A.48
Salvador, P.49
Dannenberg, J.J.50
Zakrzewski, V.G.51
Dapprich, S.52
Daniels, A.D.53
Strain, M.C.54
Farkas, O.55
Malick, D.K.56
Rabuck, A.D.57
Raghavachari, K.58
Foresman, J.B.59
Ortiz, J.V.60
Cui, Q.61
Baboul, A.G.62
Clifford, S.63
Cioslowski, J.64
Stefanov, B.B.65
Liu, G.66
Liashenko, A.67
Piskorz, P.68
Komaromi, I.69
Martin, R.L.70
Fox, D.J.71
Keith, T.72
Al-Laham, M.A.73
Peng, C.Y.74
Nanayakkara, A.75
Challacombe, M.76
Gill, P.M.W.77
Johnson, B.78
Chen, W.79
Wong, M.W.80
Gonzalez, C.81
Pople, J.A.82
more..
-
30
-
-
75749112887
-
Distributed Multipole Analysis: Stability for Large Basis Sets
-
Stone, A. J. Distributed Multipole Analysis: Stability for Large Basis Sets J. Chem. Theory Comput. 2005, 1, 1128-1132
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 1128-1132
-
-
Stone, A.J.1
-
31
-
-
79958841703
-
SwissParam: A fast force field generation tool for small organic molecules
-
Zoete, V.; Cuendet, M. A.; Grosdidier, A.; Michielin, O. SwissParam: A fast force field generation tool for small organic molecules J. Comput. Chem. 2011, 32, 2359-2368
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2359-2368
-
-
Zoete, V.1
Cuendet, M.A.2
Grosdidier, A.3
Michielin, O.4
-
32
-
-
0037571112
-
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
-
Halgren, T. A. Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94 J. Comput. Chem. 1996, 17, 490-519
-
(1996)
J. Comput. Chem.
, vol.17
, pp. 490-519
-
-
Halgren, T.A.1
-
33
-
-
0041784950
-
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
-
MacKerell, A. D.; Bashford, D.; Bellott; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiórkiewicz- Kuczera, J.; Yin, D.; Karplus, M. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998, 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-Mccarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiórkiewicz- Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
34
-
-
84890021933
-
Calculation of Small Molecular Interactions by Differences of Separate Total Energies - Some Procedures with Reduced Errors
-
Boys, S. F.; Bernardi, F. Calculation of Small Molecular Interactions by Differences of Separate Total Energies-Some Procedures with Reduced Errors Mol. Phys. 1970, 19, 553-566
-
(1970)
Mol. Phys.
, vol.19
, pp. 553-566
-
-
Boys, S.F.1
Bernardi, F.2
-
35
-
-
30244527819
-
How does basis set superposition error change the potential surfaces for hydrogen-bonded dimers?
-
Simon, S.; Duran, M.; Dannenberg, J. J. How does basis set superposition error change the potential surfaces for hydrogen-bonded dimers? J. Chem. Phys. 1996, 105, 11024-11031
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 11024-11031
-
-
Simon, S.1
Duran, M.2
Dannenberg, J.J.3
-
36
-
-
0032221819
-
Counterpoise-corrected potential energy surfaces of simple H-bonded systems
-
Hobza, P.; Zdenvk, H. Counterpoise-corrected potential energy surfaces of simple H-bonded systems Theor. Chem. Acc. 1998, 99, 372-377
-
(1998)
Theor. Chem. Acc.
, vol.99
, pp. 372-377
-
-
Hobza, P.1
Zdenvk, H.2
-
37
-
-
0346498124
-
Low-order scaling local electron correlation methods. I. Linear scaling local MP2
-
Schütz, M.; Hetzer, G.; Werner, H.-J. Low-order scaling local electron correlation methods. I. Linear scaling local MP2 J. Chem. Phys. 1999, 111, 5691-5705
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 5691-5705
-
-
Schütz, M.1
Hetzer, G.2
Werner, H.-J.3
-
38
-
-
43049141516
-
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: Two new functionals and systematic testing of four M06-class functionals and 12 other functionals
-
Zhao, Y.; Truhlar, D. G. The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals Theor. Chem. Acc. 2008, 120, 215-241
-
(2008)
Theor. Chem. Acc.
, vol.120
, pp. 215-241
-
-
Zhao, Y.1
Truhlar, D.G.2
-
39
-
-
55849117399
-
Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections
-
Chai, J.-D.; Head-Gordon, M. Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections Phys. Chem. Chem. Phys. 2008, 10, 6615-6620
-
(2008)
Phys. Chem. Chem. Phys.
, vol.10
, pp. 6615-6620
-
-
Chai, J.-D.1
Head-Gordon, M.2
-
40
-
-
44949217505
-
Accurate calculations of intermolecular interaction energies using explicitly correlated wave functions
-
Marchetti, O.; Werner, H.-J. Accurate calculations of intermolecular interaction energies using explicitly correlated wave functions Phys. Chem. Chem. Phys. 2008, 10, 3400-3409
-
(2008)
Phys. Chem. Chem. Phys.
, vol.10
, pp. 3400-3409
-
-
Marchetti, O.1
Werner, H.-J.2
-
41
-
-
0001215757
-
Double Proton Transfer: From the Formamide Dimer to the Adenine Thymine Base Pair
-
Hrouda, V.; Florian, J.; Polasek, M.; Hobza, P. Double Proton Transfer: From the Formamide Dimer to the Adenine Thymine Base Pair J. Phys. Chem. 1994, 98, 4742-4747
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 4742-4747
-
-
Hrouda, V.1
Florian, J.2
Polasek, M.3
Hobza, P.4
-
42
-
-
79953055672
-
Characterizing the Mechanism of the Double Proton Transfer in the Formamide Dimer
-
Hargis, J. C.; Voĺhringer-Martinez, E.; Woodcock, H. L.; Toro-Labbet', A.; Schaefer, H. F. Characterizing the Mechanism of the Double Proton Transfer in the Formamide Dimer J. Phys. Chem. A 2011, 115, 2650-2657
-
(2011)
J. Phys. Chem. A
, vol.115
, pp. 2650-2657
-
-
Hargis, J.C.1
Voĺhringer-Martinez, E.2
Woodcock, H.L.3
Toro-Labbet, A.4
Schaefer, H.F.5
-
43
-
-
84873647571
-
Exploring Relative Thermodynamic Stabilities of Formic Acid and Formamide Dimers Role of Low-Frequency Hydrogen-Bond Vibrations
-
10.1021/ct300889b
-
Cato, J.; Majumdar, D.; Roszak, S.; Leszczynski, J. Exploring Relative Thermodynamic Stabilities of Formic Acid and Formamide Dimers Role of Low-Frequency Hydrogen-Bond Vibrations J. Chem. Theory Comput. 2013, 10.1021/ct300889b
-
(2013)
J. Chem. Theory Comput.
-
-
Cato, J.1
Majumdar, D.2
Roszak, S.3
Leszczynski, J.4
-
44
-
-
24944573529
-
Formamide Tautomerization: Catalytic Role of Formic Acid
-
Hazra, M. K.; Chakraborty, T. Formamide Tautomerization: Catalytic Role of Formic Acid J. Phys. Chem. A 2005, 109, 7621-7625
-
(2005)
J. Phys. Chem. A
, vol.109
, pp. 7621-7625
-
-
Hazra, M.K.1
Chakraborty, T.2
-
45
-
-
84857082110
-
CHARMM Additive All-Atom Force Field for Phosphate and Sulfate Linked to Carbohydrates
-
Mallajosyula, S. S.; Guvench, O.; Hatcher, E.; MacKerell, A. D. CHARMM Additive All-Atom Force Field for Phosphate and Sulfate Linked to Carbohydrates J. Chem. Theory Comput. 2012, 8, 759-776
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 759-776
-
-
Mallajosyula, S.S.1
Guvench, O.2
Hatcher, E.3
MacKerell, A.D.4
-
46
-
-
34249910270
-
Consistent Force Field Calculations. II. Crystal Structures, Sublimation Energies, Molecular and Lattice Vibrations, Molecular Conformations, and Enthalpies of Alkanes
-
Warshel, A. Consistent Force Field Calculations. II. Crystal Structures, Sublimation Energies, Molecular and Lattice Vibrations, Molecular Conformations, and Enthalpies of Alkanes J. Chem. Phys. 1970, 53, 582-594
-
(1970)
J. Chem. Phys.
, vol.53
, pp. 582-594
-
-
Warshel, A.1
-
48
-
-
77951142226
-
Accurate Calculation of Hydration Free Energies using Pair-Specific Lennard-Jones Parameters in the CHARMM Drude Polarizable Force Field
-
Baker, C. M.; Lopes, P. E. M.; Zhu, X.; Roux, B.; MacKerell, A. D. Accurate Calculation of Hydration Free Energies using Pair-Specific Lennard-Jones Parameters in the CHARMM Drude Polarizable Force Field J. Chem. Theory Comput. 2010, 6, 1181-1198
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 1181-1198
-
-
Baker, C.M.1
Lopes, P.E.M.2
Zhu, X.3
Roux, B.4
MacKerell, A.D.5
-
49
-
-
20544433165
-
Van der Waals Volumes and Radii
-
Bondi, A. van der Waals Volumes and Radii J. Phys. Chem. 1964, 68, 441-451
-
(1964)
J. Phys. Chem.
, vol.68
, pp. 441-451
-
-
Bondi, A.1
-
51
-
-
84966297342
-
Zur kinetischen Theorie der einatomigen Körper
-
Mie, G. Zur kinetischen Theorie der einatomigen Körper Ann. Phy. 1903, 316, 657-697
-
(1903)
Ann. Phy.
, vol.316
, pp. 657-697
-
-
Mie, G.1
-
52
-
-
79961135005
-
-
R Development Core Team. R Foundation for Statistical Computing: Vienna, Austria, ISBN 3-900051-07-0.
-
R Development Core Team. R: A Language and Environment for Statistical Computing; R Foundation for Statistical Computing: Vienna, Austria, 2011; ISBN 3-900051-07-0.
-
(2011)
R: A Language and Environment for Statistical Computing
-
-
-
53
-
-
0001477674
-
The intermolecular potential energy surface for CO2UAr: Fitting to high-resolution spectroscopy of Van der Waals complexes and second virial coefficients
-
Hutson, J. M.; Ernesti, A.; Law, M. M.; Roche, C. F.; Wheatley, R. J. The intermolecular potential energy surface for CO2UAr: Fitting to high-resolution spectroscopy of Van der Waals complexes and second virial coefficients J. Chem. Phys. 1996, 105, 9130-9140
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 9130-9140
-
-
Hutson, J.M.1
Ernesti, A.2
Law, M.M.3
Roche, C.F.4
Wheatley, R.J.5
-
54
-
-
0041684239
-
Theoretical studies of van der Waals molecules and intermolecular forces
-
Buckingham, A. D.; Fowler, P. W.; Hutson, J. M. Theoretical studies of van der Waals molecules and intermolecular forces Chem. Rev. 1988, 88, 963-988
-
(1988)
Chem. Rev.
, vol.88
, pp. 963-988
-
-
Buckingham, A.D.1
Fowler, P.W.2
Hutson, J.M.3
-
55
-
-
18744387415
-
Potential energy functions for atomic-level simulations of water and organic and biomolecular systems
-
Jorgensen, W. L.; Tirado-Rives, J. Potential energy functions for atomic-level simulations of water and organic and biomolecular systems Proc. Natl. Acad. Sci. U. S. A. 2005, 102, 6665-6670
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 6665-6670
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
56
-
-
33645941402
-
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
-
Jorgensen, W. L.; Tirado-Rives, J. The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin J. Am. Chem. Soc. 1988, 110, 1657-1666
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
57
-
-
56549109784
-
Accurate Simulation of Surfaces and Interfaces of Face-Centered Cubic Metals Using 12-6 and 9-6 Lennard-Jones Potentials
-
Heinz, H.; Vaia, R. A.; Farmer, B. L.; Naik, R. R. Accurate Simulation of Surfaces and Interfaces of Face-Centered Cubic Metals Using 12-6 and 9-6 Lennard-Jones Potentials J. Phys. Chem. C 2008, 112, 17281-17290
-
(2008)
J. Phys. Chem. C
, vol.112
, pp. 17281-17290
-
-
Heinz, H.1
Vaia, R.A.2
Farmer, B.L.3
Naik, R.R.4
-
58
-
-
70449429367
-
Solid-liquid equilibria and triple points of n-6 Lennard-Jones fluids
-
Ahmed, A.; Sadus, R. J. Solid-liquid equilibria and triple points of n-6 Lennard-Jones fluids J. Chem. Phys. 2009, 131, 174504-174511
-
(2009)
J. Chem. Phys.
, vol.131
, pp. 174504-174511
-
-
Ahmed, A.1
Sadus, R.J.2
-
59
-
-
0031228128
-
A computationally efficient alternative to the Buckingham potential for molecular mechanics calculations
-
White, D. N. A computationally efficient alternative to the Buckingham potential for molecular mechanics calculations J. Comput.-Aided Mol. Des. 1997, 11, 517-521
-
(1997)
J. Comput.-Aided Mol. Des.
, vol.11
, pp. 517-521
-
-
White, D.N.1
-
60
-
-
0024821263
-
Molecular mechanics. The MM3 force field for hydrocarbons. 1
-
Allinger, N. L.; Yuh, Y. H.; Lii, J. H. Molecular mechanics. The MM3 force field for hydrocarbons. 1 J. Am. Chem. Soc. 1989, 111, 8551-8566
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 8551-8566
-
-
Allinger, N.L.1
Yuh, Y.H.2
Lii, J.H.3
-
61
-
-
0001195079
-
Critical evaluation of molecular mechanics
-
Engler, E. M.; Andose, J. D.; Schleyer, P. V. R. Critical evaluation of molecular mechanics J. Am. Chem. Soc. 1973, 95, 8005-8025
-
(1973)
J. Am. Chem. Soc.
, vol.95
, pp. 8005-8025
-
-
Engler, E.M.1
Andose, J.D.2
Schleyer, P.V.R.3
-
62
-
-
0001658015
-
An ab Initio CFF93 All-Atom Force Field for Polycarbonates
-
Sun, H.; Mumby, S. J.; Maple, J. R.; Hagler, A. T. An ab Initio CFF93 All-Atom Force Field for Polycarbonates J. Am. Chem. Soc. 1994, 116, 2978-2987
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 2978-2987
-
-
Sun, H.1
Mumby, S.J.2
Maple, J.R.3
Hagler, A.T.4
-
63
-
-
0001189010
-
COMPASS: An ab Initio Force-Field Optimized for Condensed-Phase Applications Overview with Details on Alkane and Benzene Compounds
-
Sun, H. COMPASS: An ab Initio Force-Field Optimized for Condensed-Phase Applications Overview with Details on Alkane and Benzene Compounds J. Phys. Chem. B 1998, 102, 7338-7364
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 7338-7364
-
-
Sun, H.1
-
64
-
-
84862654593
-
Development of Polarizable Models for Molecular Mechanical Calculations. 4. van der Waals Parametrization
-
Wang, J.; Cieplak, P.; Li, J.; Cai, Q.; Hsieh, M.-J.; Luo, R.; Duan, Y. Development of Polarizable Models for Molecular Mechanical Calculations. 4. van der Waals Parametrization J. Phys. Chem. B 2012, 116, 7088-7101
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 7088-7101
-
-
Wang, J.1
Cieplak, P.2
Li, J.3
Cai, Q.4
Hsieh, M.-J.5
Luo, R.6
Duan, Y.7
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