메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Transcriptomics of morphological color change in polychromatic Midas cichlids

Author keywords

Color change; Differential expression; Melanophore; Midas cichlids; RNAseq; Tyrosinase genes

Indexed keywords

ANIMAL STRUCTURES; ARTICLE; BIOLOGICAL TRAIT; CICHLID; COLOR CHANGE; DNA LIBRARY; EARLY RESPONSE GENE; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE SEGREGATION; GENE TARGETING; GENETIC POLYMORPHISM; MELANOSOME; MIDAS CICHLIDS; NONHUMAN; NUCLEOTIDE SEQUENCE; PIGMENTATION; RNA SEQUENCE; SIGNAL TRANSDUCTION; SKIN COLOR; TRANSCRIPTOMICS; UPREGULATION;

EID: 84874794159     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-171     Document Type: Article
Times cited : (85)

References (70)
  • 1
    • 77951931078 scopus 로고    scopus 로고
    • Vertebrate pigmentation: from underlying genes to adaptive function
    • 10.1016/j.tig.2010.02.002, 20381892
    • Hubbard JK, Uy JAC, Hauber ME, Hoekstra HE, Safran RJ. Vertebrate pigmentation: from underlying genes to adaptive function. Trends Genet 2010, 26:231-239. 10.1016/j.tig.2010.02.002, 20381892.
    • (2010) Trends Genet , vol.26 , pp. 231-239
    • Hubbard, J.K.1    Uy, J.A.C.2    Hauber, M.E.3    Hoekstra, H.E.4    Safran, R.J.5
  • 3
    • 72449158780 scopus 로고    scopus 로고
    • Sexual conflict resolved by invasion of a novel sex determiner in Lake Malawi cichlid fishes
    • 10.1126/science.1174705, 3174268, 19797625
    • Roberts RB, Ser JR, Kocher TD. Sexual conflict resolved by invasion of a novel sex determiner in Lake Malawi cichlid fishes. Science 2009, 326:998-1001. 10.1126/science.1174705, 3174268, 19797625.
    • (2009) Science , vol.326 , pp. 998-1001
    • Roberts, R.B.1    Ser, J.R.2    Kocher, T.D.3
  • 4
    • 33745911143 scopus 로고    scopus 로고
    • A single amino acid mutation contributes to adaptive beach mouse color pattern
    • 10.1126/science.1126121, 16825572
    • Hoekstra HE, Hirschmann RJ, Bundey RA, Insel PA, Crossland JP. A single amino acid mutation contributes to adaptive beach mouse color pattern. Science 2006, 313:101-104. 10.1126/science.1126121, 16825572.
    • (2006) Science , vol.313 , pp. 101-104
    • Hoekstra, H.E.1    Hirschmann, R.J.2    Bundey, R.A.3    Insel, P.A.4    Crossland, J.P.5
  • 5
    • 79952063440 scopus 로고    scopus 로고
    • The developmental role of agouti in color pattern evolution
    • 10.1126/science.1200684, 21350176
    • Manceau M, Domingues VS, Mallarino R, Hoekstra HE. The developmental role of agouti in color pattern evolution. Science 2011, 331:1062-1065. 10.1126/science.1200684, 21350176.
    • (2011) Science , vol.331 , pp. 1062-1065
    • Manceau, M.1    Domingues, V.S.2    Mallarino, R.3    Hoekstra, H.E.4
  • 7
    • 0037564969 scopus 로고    scopus 로고
    • Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila
    • 10.1038/nature01679, 12802326
    • Presgraves DC, Balagopalan L, Abmayr SM, Orr HA. Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila. Nature 2003, 423:715-719. 10.1038/nature01679, 12802326.
    • (2003) Nature , vol.423 , pp. 715-719
    • Presgraves, D.C.1    Balagopalan, L.2    Abmayr, S.M.3    Orr, H.A.4
  • 8
    • 58149394297 scopus 로고    scopus 로고
    • Research implications of pigment biology in zebrafish discussion
    • 10.1089/zeb.2008.9981, 19133820
    • Ekker SC, Parichy DM, Cheng KC. Research implications of pigment biology in zebrafish discussion. Zebrafish 2008, 5:233-235. 10.1089/zeb.2008.9981, 19133820.
    • (2008) Zebrafish , vol.5 , pp. 233-235
    • Ekker, S.C.1    Parichy, D.M.2    Cheng, K.C.3
  • 9
    • 58149379992 scopus 로고    scopus 로고
    • Skin color in fish and humans: impacts on science and society
    • 10.1089/zeb.2008.0577, 2766632,2766632, 19133821
    • Cheng KC. Skin color in fish and humans: impacts on science and society. Zebrafish 2008, 5:237-242. 10.1089/zeb.2008.0577, 2766632,2766632, 19133821.
    • (2008) Zebrafish , vol.5 , pp. 237-242
    • Cheng, K.C.1
  • 10
    • 0028926540 scopus 로고
    • Platyfish and swordtails: a genetic system for the analysis of molecular mechanisms in tumor formation
    • 10.1016/S0168-9525(00)89041-1, 7785077
    • Schartl M. Platyfish and swordtails: a genetic system for the analysis of molecular mechanisms in tumor formation. Trends Genet 1995, 11:185-189. 10.1016/S0168-9525(00)89041-1, 7785077.
    • (1995) Trends Genet , vol.11 , pp. 185-189
    • Schartl, M.1
  • 11
    • 77951747521 scopus 로고    scopus 로고
    • 'Fish matters': the relevance of fish skin biology to investigative dermatology
    • 10.1111/j.1600-0625.2009.01059.x, 20158518
    • Rakers S, Gebert M, Uppalapati S, Meyer W, Maderson P, Sell AF, Kruse C, Paus R. 'Fish matters': the relevance of fish skin biology to investigative dermatology. Exp Dermatol 2010, 19:313-324. 10.1111/j.1600-0625.2009.01059.x, 20158518.
    • (2010) Exp Dermatol , vol.19 , pp. 313-324
    • Rakers, S.1    Gebert, M.2    Uppalapati, S.3    Meyer, W.4    Maderson, P.5    Sell, A.F.6    Kruse, C.7    Paus, R.8
  • 12
    • 33747890201 scopus 로고    scopus 로고
    • Evolution of danio pigment pattern development
    • 10.1038/sj.hdy.6800867, 16835593
    • Parichy DM. Evolution of danio pigment pattern development. Heredity 2006, 97:200-210. 10.1038/sj.hdy.6800867, 16835593.
    • (2006) Heredity , vol.97 , pp. 200-210
    • Parichy, D.M.1
  • 14
    • 0034928757 scopus 로고    scopus 로고
    • Mutations in the gene encoding B, a novel transporter protein, reduce melanin content in medaka
    • 10.1038/ng584, 11479596
    • Fukamachi S, Shimada A, Shima A. Mutations in the gene encoding B, a novel transporter protein, reduce melanin content in medaka. Nat Genet 2001, 28:381-385. 10.1038/ng584, 11479596.
    • (2001) Nat Genet , vol.28 , pp. 381-385
    • Fukamachi, S.1    Shimada, A.2    Shima, A.3
  • 15
    • 36849071407 scopus 로고    scopus 로고
    • Cis-regulatory changes in kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans
    • 10.1016/j.cell.2007.10.055, 2900316, 18083106
    • Miller CT, Beleza S, Pollen AA, Schluter D, Kittles RA, Shriver MD, Kingsley DM. cis-regulatory changes in kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans. Cell 2007, 131:1179-1189. 10.1016/j.cell.2007.10.055, 2900316, 18083106.
    • (2007) Cell , vol.131 , pp. 1179-1189
    • Miller, C.T.1    Beleza, S.2    Pollen, A.A.3    Schluter, D.4    Kittles, R.A.5    Shriver, M.D.6    Kingsley, D.M.7
  • 16
    • 1842427843 scopus 로고    scopus 로고
    • Adaptive evolution and explosive speciation: the cichlid fish model
    • 10.1038/nrg1316, 15131652
    • Kocher T. Adaptive evolution and explosive speciation: the cichlid fish model. Nat Rev Genet 2004, 5:288-298. 10.1038/nrg1316, 15131652.
    • (2004) Nat Rev Genet , vol.5 , pp. 288-298
    • Kocher, T.1
  • 17
    • 0027617368 scopus 로고
    • Similar morphologies of cichlid fish in Lakes Tanganyika and Malawi are due to convergence
    • 10.1006/mpev.1993.1016, 8025722
    • Kocher TD, Conroy JA, McKaye KR, Stauffer JR. Similar morphologies of cichlid fish in Lakes Tanganyika and Malawi are due to convergence. Mol Phylogenet Evol 1993, 2:158-165. 10.1006/mpev.1993.1016, 8025722.
    • (1993) Mol Phylogenet Evol , vol.2 , pp. 158-165
    • Kocher, T.D.1    Conroy, J.A.2    McKaye, K.R.3    Stauffer, J.R.4
  • 18
    • 0034496643 scopus 로고    scopus 로고
    • African cichlid fishes: Model systems for evolutionary biology
    • Kornfield I, Smith PF. African cichlid fishes: Model systems for evolutionary biology. Annu Rev Ecol Syst 2000, 31:163.
    • (2000) Annu Rev Ecol Syst , vol.31 , pp. 163
    • Kornfield, I.1    Smith, P.F.2
  • 20
    • 0345060890 scopus 로고    scopus 로고
    • Divergent selection during speciation of Lake Malawi cichlid fishes inferred from parallel radiations in nuptial coloration
    • 10.1073/pnas.2332665100, 283548, 14614144
    • Allender CJ, Seehausen O, Knight ME, Turner GF, Maclean N. Divergent selection during speciation of Lake Malawi cichlid fishes inferred from parallel radiations in nuptial coloration. Proc Natl Acad Sci USA 2003, 100:14074-14079. 10.1073/pnas.2332665100, 283548, 14614144.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 14074-14079
    • Allender, C.J.1    Seehausen, O.2    Knight, M.E.3    Turner, G.F.4    Maclean, N.5
  • 21
    • 3042785096 scopus 로고    scopus 로고
    • The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes?
    • 10.1111/j.1365-294X.2004.02211.x, 15189226
    • Barluenga M, Meyer A. The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes?. Mol Ecol 2004, 13:2061-2076. 10.1111/j.1365-294X.2004.02211.x, 15189226.
    • (2004) Mol Ecol , vol.13 , pp. 2061-2076
    • Barluenga, M.1    Meyer, A.2
  • 22
    • 32544432563 scopus 로고    scopus 로고
    • Sympatric speciation in Nicaraguan crater lake cichlid fish
    • 10.1038/nature04325, 16467837
    • Barluenga M, Stolting KN, Salzburger W, Muschick M, Meyer A. Sympatric speciation in Nicaraguan crater lake cichlid fish. Nature 2006, 439:719-723. 10.1038/nature04325, 16467837.
    • (2006) Nature , vol.439 , pp. 719-723
    • Barluenga, M.1    Stolting, K.N.2    Salzburger, W.3    Muschick, M.4    Meyer, A.5
  • 23
    • 0034619345 scopus 로고    scopus 로고
    • Incipient speciation in sympatric Nicaraguan crater lake cichlid fishes: sexual selection versus ecological diversification
    • Wilson AB, Noack-Kunnmann K, Meyer A. Incipient speciation in sympatric Nicaraguan crater lake cichlid fishes: sexual selection versus ecological diversification. Proc R Soc Lond B Biol Sci 2000, 267:2133-2141.
    • (2000) Proc R Soc Lond B Biol Sci , vol.267 , pp. 2133-2141
    • Wilson, A.B.1    Noack-Kunnmann, K.2    Meyer, A.3
  • 24
    • 70349850951 scopus 로고    scopus 로고
    • Color assortative mating contributes to sympatric divergence of neotropical cichlid fish
    • 10.1111/j.1558-5646.2009.00736.x, 19490078
    • Elmer KR, Lehtonen TK, Meyer A. Color assortative mating contributes to sympatric divergence of neotropical cichlid fish. Evolution 2009, 63:2750-2757. 10.1111/j.1558-5646.2009.00736.x, 19490078.
    • (2009) Evolution , vol.63 , pp. 2750-2757
    • Elmer, K.R.1    Lehtonen, T.K.2    Meyer, A.3
  • 25
    • 0003299546 scopus 로고
    • Competition between color morphs of the Midas cichlid, Cichlasoma citrinellum, in Lake Jiloá, Nicaragua
    • Lincoln: School of Life Sciences, University of Nebraska-Lincoln, Thorson TB
    • Mckaye KR, Barlow GW. Competition between color morphs of the Midas cichlid, Cichlasoma citrinellum, in Lake Jiloá, Nicaragua. Investigations of the ichthyofauna of Nicaraguan lakes 1976, 465-475. Lincoln: School of Life Sciences, University of Nebraska-Lincoln, Thorson TB.
    • (1976) Investigations of the ichthyofauna of Nicaraguan lakes , pp. 465-475
    • Mckaye, K.R.1    Barlow, G.W.2
  • 26
    • 0024041832 scopus 로고
    • Melanophore death and disappearance produces color metamorphosis in the polychromatic Midas cichlid (Cichlasoma citrinellum)
    • Dickman MC, Schliwa M, Barlow GW. Melanophore death and disappearance produces color metamorphosis in the polychromatic Midas cichlid (Cichlasoma citrinellum). Cell Tissue Res 1988, 253:9-14.
    • (1988) Cell Tissue Res , vol.253 , pp. 9-14
    • Dickman, M.C.1    Schliwa, M.2    Barlow, G.W.3
  • 27
    • 0000881722 scopus 로고
    • The benefits of being gold: Behavioral consequences of polychromatism in the Midas cichlid, Cichlasoma citrinellum
    • Barlow GW. The benefits of being gold: Behavioral consequences of polychromatism in the Midas cichlid, Cichlasoma citrinellum. Environ Biol Fishes 1983, 8:235-247.
    • (1983) Environ Biol Fishes , vol.8 , pp. 235-247
    • Barlow, G.W.1
  • 28
    • 77954424356 scopus 로고    scopus 로고
    • Genetic, comparative genomic, and expression analyses of the Mc1r locus in the polychromatic Midas cichlid fish (Teleostei, Cichlidae Amphilophus sp.) species group
    • 10.1007/s00239-010-9340-4, 20449580
    • Henning F, Renz AJ, Fukamachi S, Meyer A. Genetic, comparative genomic, and expression analyses of the Mc1r locus in the polychromatic Midas cichlid fish (Teleostei, Cichlidae Amphilophus sp.) species group. J Mol Evol 2010, 70:405-412. 10.1007/s00239-010-9340-4, 20449580.
    • (2010) J Mol Evol , vol.70 , pp. 405-412
    • Henning, F.1    Renz, A.J.2    Fukamachi, S.3    Meyer, A.4
  • 29
    • 0002504399 scopus 로고
    • The Midas cichlid in Nicaragua
    • Lincoln: School of Life Sciences, University of Nebraska-Lincoln, Thorson TB
    • Barlow GW. The Midas cichlid in Nicaragua. Investigations of the ichthyofauna of Nicaraguan lakes 1976, 333-358. Lincoln: School of Life Sciences, University of Nebraska-Lincoln, Thorson TB.
    • (1976) Investigations of the ichthyofauna of Nicaraguan lakes , pp. 333-358
    • Barlow, G.W.1
  • 30
    • 0000561181 scopus 로고
    • Sympatric speciation
    • Maynard Smith J. Sympatric speciation. Am Nat 1966, 100:637-650.
    • (1966) Am Nat , vol.100 , pp. 637-650
    • Maynard Smith, J.1
  • 31
    • 33646271860 scopus 로고    scopus 로고
    • Linkage of butterfly mate preference and wing color preference cue at the genomic location of wingless
    • 10.1073/pnas.0509685103, 1458925, 16611733
    • Kronforst MR, Young LG, Kapan DD, McNeely C, O'Neill RJ, Gilbert LE. Linkage of butterfly mate preference and wing color preference cue at the genomic location of wingless. Proc Natl Acad Sci 2006, 103:6575-6580. 10.1073/pnas.0509685103, 1458925, 16611733.
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 6575-6580
    • Kronforst, M.R.1    Young, L.G.2    Kapan, D.D.3    McNeely, C.4    O'Neill, R.J.5    Gilbert, L.E.6
  • 32
    • 67649865644 scopus 로고    scopus 로고
    • Genomic linkage of male song and female acoustic preference QTL underlying a rapid species radiation
    • 10.1073/pnas.0900229106, 2701026, 19487670
    • Shaw KL, Lesnick SC. Genomic linkage of male song and female acoustic preference QTL underlying a rapid species radiation. Proc Natl Acad Sci USA 2009, 106:9737-9742. 10.1073/pnas.0900229106, 2701026, 19487670.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9737-9742
    • Shaw, K.L.1    Lesnick, S.C.2
  • 33
    • 70449504519 scopus 로고    scopus 로고
    • Dual control by a single gene of secondary sexual characters and mating preferences in medaka
    • 10.1186/1741-7007-7-64, 2761876, 19788724
    • Fukamachi S, Kinoshita M, Aizawa K, Oda S, Meyer A, Mitani H. Dual control by a single gene of secondary sexual characters and mating preferences in medaka. BMC Biol 2009, 7:64. 10.1186/1741-7007-7-64, 2761876, 19788724.
    • (2009) BMC Biol , vol.7 , pp. 64
    • Fukamachi, S.1    Kinoshita, M.2    Aizawa, K.3    Oda, S.4    Meyer, A.5    Mitani, H.6
  • 34
    • 80455123747 scopus 로고    scopus 로고
    • Pleiotropy, "sexy" traits, and speciation
    • Shaw KL, Ellison CK, Oh KP, Wiley C. Pleiotropy, "sexy" traits, and speciation. Behav Ecol 2011, 22(6):1154-1155.
    • (2011) Behav Ecol , vol.22 , Issue.6 , pp. 1154-1155
    • Shaw, K.L.1    Ellison, C.K.2    Oh, K.P.3    Wiley, C.4
  • 35
    • 33747873404 scopus 로고    scopus 로고
    • Genetics, development and evolution of adaptive pigmentation in vertebrates
    • 10.1038/sj.hdy.6800861, 16823403
    • Hoekstra HE. Genetics, development and evolution of adaptive pigmentation in vertebrates. Heredity 2006, 97:222-234. 10.1038/sj.hdy.6800861, 16823403.
    • (2006) Heredity , vol.97 , pp. 222-234
    • Hoekstra, H.E.1
  • 36
    • 84889615064 scopus 로고    scopus 로고
    • Regulation of melanoblast migration and differentiation
    • Malden, Mass: Blackwell Publishing Ltd, Nordlund JJ
    • Parichy DM, Reedy MV, Erickson CA. Regulation of melanoblast migration and differentiation. The Pigmentary System 2007, 108-139. Malden, Mass: Blackwell Publishing Ltd, Nordlund JJ.
    • (2007) The Pigmentary System , pp. 108-139
    • Parichy, D.M.1    Reedy, M.V.2    Erickson, C.A.3
  • 37
    • 77954003816 scopus 로고    scopus 로고
    • Morphological skin color changes in teleosts
    • Leclercq E, Taylor JF, Migaud H. Morphological skin color changes in teleosts. Fish Fish 2010, 11:159-193.
    • (2010) Fish Fish , vol.11 , pp. 159-193
    • Leclercq, E.1    Taylor, J.F.2    Migaud, H.3
  • 38
    • 26244436635 scopus 로고    scopus 로고
    • A window on the genetics of evolution: MC1R and plumage coloration in birds
    • 10.1098/rspb.2005.3107, 1559852, 16087416
    • Mundy NI. A window on the genetics of evolution: MC1R and plumage coloration in birds. Proc Biol Sci 2005, 272:1633-1640. 10.1098/rspb.2005.3107, 1559852, 16087416.
    • (2005) Proc Biol Sci , vol.272 , pp. 1633-1640
    • Mundy, N.I.1
  • 39
    • 0033810598 scopus 로고    scopus 로고
    • The regulation of motile activity in fish chromatophores
    • Fujii R. The regulation of motile activity in fish chromatophores. Pigm Cell Res 2000, 13:300-319.
    • (2000) Pigm Cell Res , vol.13 , pp. 300-319
    • Fujii, R.1
  • 40
    • 0027529484 scopus 로고
    • Pigmentation genes - the tyrosinase gene family and the Pmel-17 gene family
    • Kwon BS. Pigmentation genes - the tyrosinase gene family and the Pmel-17 gene family. J Investig Dermatol 1993, 100:S134-S140.
    • (1993) J Investig Dermatol , vol.100
    • Kwon, B.S.1
  • 42
    • 34547774225 scopus 로고    scopus 로고
    • Sequence variants in the genes for the interleukin-23 receptor (IL23R) and its ligand (IL12B) confer protection against psoriasis
    • 10.1007/s00439-007-0397-0, 17587057
    • Capon F, Di Meglio P, Szaub J, Prescott NJ, Dunster C, Baumber L, Gutin A, Abkevic V, Burden AD, Lanchbury J. Sequence variants in the genes for the interleukin-23 receptor (IL23R) and its ligand (IL12B) confer protection against psoriasis. Hum Genet 2007, 122:201-206. 10.1007/s00439-007-0397-0, 17587057.
    • (2007) Hum Genet , vol.122 , pp. 201-206
    • Capon, F.1    Di Meglio, P.2    Szaub, J.3    Prescott, N.J.4    Dunster, C.5    Baumber, L.6    Gutin, A.7    Abkevic, V.8    Burden, A.D.9    Lanchbury, J.10
  • 43
    • 0025895813 scopus 로고
    • Expression of c-jun, jun-B, and c-fos proto-oncogenes in human primary melanocytes and metastatic melanomas
    • 10.1111/1523-1747.ep12480698, 1712822
    • Yamanishi DT, Buckmeier JA, Meyskens FL. Expression of c-jun, jun-B, and c-fos proto-oncogenes in human primary melanocytes and metastatic melanomas. J Investig Dermatol 1991, 97:349-353. 10.1111/1523-1747.ep12480698, 1712822.
    • (1991) J Investig Dermatol , vol.97 , pp. 349-353
    • Yamanishi, D.T.1    Buckmeier, J.A.2    Meyskens, F.L.3
  • 45
    • 0035008008 scopus 로고    scopus 로고
    • Mutations in the agouti (ASIP), the extension (MC1R), and the brown (TYRP1) loci and their association to coat color phenotypes in horses (Equus caballus)
    • 10.1007/s003350020017, 11353392
    • Rieder S, Taourit S, Mariat D, Langlois B, Guerin G. Mutations in the agouti (ASIP), the extension (MC1R), and the brown (TYRP1) loci and their association to coat color phenotypes in horses (Equus caballus). Mamm Genome 2001, 12:450-455. 10.1007/s003350020017, 11353392.
    • (2001) Mamm Genome , vol.12 , pp. 450-455
    • Rieder, S.1    Taourit, S.2    Mariat, D.3    Langlois, B.4    Guerin, G.5
  • 46
    • 33646685676 scopus 로고    scopus 로고
    • Oculocutaneous albinism with TYRP1 gene mutations in a Caucasian patient
    • Rooryck C, Roudaut C, Robine E, Müsebeck J, Arveiler B. Oculocutaneous albinism with TYRP1 gene mutations in a Caucasian patient. Pigm Cell Res 2006, 19:239-242.
    • (2006) Pigm Cell Res , vol.19 , pp. 239-242
    • Rooryck, C.1    Roudaut, C.2    Robine, E.3    Müsebeck, J.4    Arveiler, B.5
  • 47
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • 10.1093/bioinformatics/btp616, 2796818, 19910308
    • Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139-140. 10.1093/bioinformatics/btp616, 2796818, 19910308.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 48
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • 10.1186/gb-2010-11-10-r106, 3218662, 20979621
    • Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biol 2010, 11:R106. 10.1186/gb-2010-11-10-r106, 3218662, 20979621.
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 49
    • 77955298482 scopus 로고    scopus 로고
    • BaySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
    • Hardcastle TJ, Kelly KA. baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data. BMC Bioinforma 2010, 11:422.
    • (2010) BMC Bioinforma , vol.11 , pp. 422
    • Hardcastle, T.J.1    Kelly, K.A.2
  • 50
    • 35648956630 scopus 로고    scopus 로고
    • Molecular characterization and gene expression of a CXC chemokine gene from Japanese flounder Paralichthys olivaceus
    • 10.1016/j.fsi.2007.07.006, 17804256
    • Kim HJ, Yasuike M, Kondo H, Hirono I, Aoki T. Molecular characterization and gene expression of a CXC chemokine gene from Japanese flounder Paralichthys olivaceus. Fish Shellfish Immunol 2007, 23:1275-1284. 10.1016/j.fsi.2007.07.006, 17804256.
    • (2007) Fish Shellfish Immunol , vol.23 , pp. 1275-1284
    • Kim, H.J.1    Yasuike, M.2    Kondo, H.3    Hirono, I.4    Aoki, T.5
  • 51
    • 18444418797 scopus 로고    scopus 로고
    • Bcl2 regulation by the melanocyte master regulator Mitf modulates lineage survival and melanoma cell viability
    • 10.1016/S0092-8674(02)00762-6, 12086670
    • McGill GG, Horstmann M, Widlund HR, Du JY, Motyckova G, Nishimura EK, Lin YL, Ramaswamy S, Avery W, Ding HF. Bcl2 regulation by the melanocyte master regulator Mitf modulates lineage survival and melanoma cell viability. Cell 2002, 109:707-718. 10.1016/S0092-8674(02)00762-6, 12086670.
    • (2002) Cell , vol.109 , pp. 707-718
    • McGill, G.G.1    Horstmann, M.2    Widlund, H.R.3    Du, J.Y.4    Motyckova, G.5    Nishimura, E.K.6    Lin, Y.L.7    Ramaswamy, S.8    Avery, W.9    Ding, H.F.10
  • 54
    • 84863592418 scopus 로고    scopus 로고
    • Molecular and developmental contributions to divergent pigment patterns in marine and freshwater sticklebacks
    • 10.1111/j.1525-142X.2012.00553.x, 22765206
    • Greenwood AK, Cech JN, Peichel CL. Molecular and developmental contributions to divergent pigment patterns in marine and freshwater sticklebacks. Evol Dev 2012, 14:351-362. 10.1111/j.1525-142X.2012.00553.x, 22765206.
    • (2012) Evol Dev , vol.14 , pp. 351-362
    • Greenwood, A.K.1    Cech, J.N.2    Peichel, C.L.3
  • 55
    • 34250182014 scopus 로고    scopus 로고
    • Evolution of pigment synthesis pathways by gene and genome duplication in fish
    • 10.1186/1471-2148-7-74, 1890551, 17498288
    • Braasch I, Schartl M, Volff JN. Evolution of pigment synthesis pathways by gene and genome duplication in fish. BMC Evol Biol 2007, 7:74. 10.1186/1471-2148-7-74, 1890551, 17498288.
    • (2007) BMC Evol Biol , vol.7 , pp. 74
    • Braasch, I.1    Schartl, M.2    Volff, J.N.3
  • 56
    • 70350106594 scopus 로고    scopus 로고
    • Pigmentary function and evolution of tyrp1 gene duplicates in fish
    • 10.1111/j.1755-148X.2009.00614.x, 19659755
    • Braasch I, Liedtke D, Volff JN, Schartl M. Pigmentary function and evolution of tyrp1 gene duplicates in fish. Pigment Cell Melanoma Res 2009, 22:839-850. 10.1111/j.1755-148X.2009.00614.x, 19659755.
    • (2009) Pigment Cell Melanoma Res , vol.22 , pp. 839-850
    • Braasch, I.1    Liedtke, D.2    Volff, J.N.3    Schartl, M.4
  • 57
    • 33646885704 scopus 로고    scopus 로고
    • Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration
    • 10.1093/molbev/msk003, 16547150
    • Braasch I, Salzburger W, Meyer A. Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Mol Biol Evol 2006, 23:1192-1202. 10.1093/molbev/msk003, 16547150.
    • (2006) Mol Biol Evol , vol.23 , pp. 1192-1202
    • Braasch, I.1    Salzburger, W.2    Meyer, A.3
  • 58
    • 0032841827 scopus 로고    scopus 로고
    • Zebrafish sparse corresponds to an orthologue of c-kit and is required for the morphogenesis of a subpopulation of melonocytes but is not essential for hematopoises or primordial germ cell development
    • Parichy DM, Rawls JF, Pratt SH, Whitfield TT, Johnson SL. Zebrafish sparse corresponds to an orthologue of c-kit and is required for the morphogenesis of a subpopulation of melonocytes but is not essential for hematopoises or primordial germ cell development. Development 1999, 126:3425-3436.
    • (1999) Development , vol.126 , pp. 3425-3436
    • Parichy, D.M.1    Rawls, J.F.2    Pratt, S.H.3    Whitfield, T.T.4    Johnson, S.L.5
  • 59
    • 0036215886 scopus 로고    scopus 로고
    • Distinctive distribution of AIM1 polymorphism among major human populations with different skin color
    • 10.1007/s100380200007, 11916009
    • Nakayama K, Fukamachi S, Kimura H, Koda Y, Soemantri A, Ishida T. Distinctive distribution of AIM1 polymorphism among major human populations with different skin color. J Hum Genet 2002, 47:92-94. 10.1007/s100380200007, 11916009.
    • (2002) J Hum Genet , vol.47 , pp. 92-94
    • Nakayama, K.1    Fukamachi, S.2    Kimura, H.3    Koda, Y.4    Soemantri, A.5    Ishida, T.6
  • 60
    • 79956051868 scopus 로고    scopus 로고
    • Adaptation in the age of ecological genomics: insights from parallelism and convergence
    • 10.1016/j.tree.2011.02.008, 21459472
    • Elmer KR, Meyer A. Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends Ecol Evol 2011, 26:298-306. 10.1016/j.tree.2011.02.008, 21459472.
    • (2011) Trends Ecol Evol , vol.26 , pp. 298-306
    • Elmer, K.R.1    Meyer, A.2
  • 61
    • 58549094097 scopus 로고    scopus 로고
    • Genomic analysis of cichlid fish 'natural mutants'
    • 10.1016/j.gde.2008.11.002, 19095433
    • Kuraku S, Meyer A. Genomic analysis of cichlid fish 'natural mutants'. Curr Opin Genet Dev 2008, 18:551-558. 10.1016/j.gde.2008.11.002, 19095433.
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 551-558
    • Kuraku, S.1    Meyer, A.2
  • 62
    • 77955883388 scopus 로고    scopus 로고
    • Biases in Illumina transcriptome sequencing caused by random hexamer priming
    • Hansen KD, Brenner SE, Dudoit S. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 2010, 38.
    • (2010) Nucleic Acids Res , vol.38
    • Hansen, K.D.1    Brenner, S.E.2    Dudoit, S.3
  • 63
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 10.1186/gb-2009-10-3-r25, 2690996, 19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 64
    • 84859768479 scopus 로고    scopus 로고
    • Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
    • 10.1093/bioinformatics/bts094, 3324515, 22368243
    • Schulz MH, Zerbino DR, Vingron M, Birney E. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 2012, 28:1086-1092. 10.1093/bioinformatics/bts094, 3324515, 22368243.
    • (2012) Bioinformatics , vol.28 , pp. 1086-1092
    • Schulz, M.H.1    Zerbino, D.R.2    Vingron, M.3    Birney, E.4
  • 65
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • 10.1101/gr.074492.107, 2336801, 18349386
    • Zerbino DR, Birney E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18:821-829. 10.1101/gr.074492.107, 2336801, 18349386.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 66
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • 10.1093/bioinformatics/btl158, 16731699
    • Li WZ, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22:1658-1659. 10.1093/bioinformatics/btl158, 16731699.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.Z.1    Godzik, A.2
  • 67
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.H.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 69
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520, 14530136
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704. 10.1080/10635150390235520, 14530136.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 70
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C. SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 1996, 12:543-548.
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.