Pigmentary function and evolution of tyrp1 gene duplicates in fish

Pigment Cell and Melanoma Research

Volumn 22, Issue 6, 2009, Pages 839-850

  Braasch, Ingo ^a   Liedtke, Daniel ^a   Volff, Jean Nicolas ^b   Schartl, Manfred ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

^b UNIVERSITÉ DE LYON   (France)

Author keywords

Fish specific genome duplication; Melanin synthesis; Melanocyte; Teleost; Tyrosinase related protein 1

Indexed keywords

EUMELANIN; TYROSINASE RELATED PROTEIN 1; TYROSINASE RELATED PROTEIN 1A; TYROSINASE RELATED PROTEIN 1B; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EMBRYO; GENE DUPLICATION; GENE EXPRESSION; GENE SEQUENCE; KNOCKOUT GENE; MELANOPHORE; MELANOSOME; NONHUMAN; NUCLEOTIDE SEQUENCE; ORYZIAS; PARALOGY; PIGMENT EPITHELIUM; PIGMENTATION; PLESIOMORPHY; PROTEIN FUNCTION; TELEOST; ZEBRA FISH;

DANIO RERIO; EUTELEOSTOMI; ORYZIINAE; TELEOSTEI; TETRAPODA; VERTEBRATA;

EID: 70350106594     PISSN: 17551471     EISSN: 1755148X     Source Type: Journal    
DOI: 10.1111/j.1755-148X.2009.00614.x     Document Type: Article

References (58)

1. Alonso, S., Izagirre, N., Smith-Zubiaga, I., Gardeazabal, J., Diaz-Ramon, J.L., Diaz-Perez, J.L., Zelenika, D., Boyano, M.D., Smit, N. De La Rua, C. (2008). Complex signatures of selection for the melanogenic loci TYR, TYRP1 and DCT in humans. BMC Evol. Biol. 8, 74.
2. Babenko, V.N., Rogozin, I.B., Mekhedov, S.L. Koonin, E.V. (2004). Prevalence of intron gain over intron loss in the evolution of paralogous gene families. Nucleic Acids Res. 32, 3724 3733.
3. Béjar, J., Hong, Y. Schartl, M. (2003). Mitf expression is sufficient to direct differentiation of medaka blastula derived stem cells to melanocytes. Development 130, 6545 6553.
4. Berryere, T.G., Schmutz, S.M., Schimpf, R.J., Cowan, C.M. Potter, J. (2003). TYRP1 is associated with dun coat colour in Dexter cattle or how now brown cow? Anim. Genet. 34, 169 175.
5. Boissy, R.E., Zhao, H., Oetting, W.S. et al. (1996). Mutation in and lack of expression of tyrosinase-related protein-1 (TRP-1) in melanocytes from an individual with brown oculocutaneous albinism: a new subtype of albinism classified as "OCA3". Am. J. Hum. Genet. 58, 1145 1156.
6. Boissy, R.E., Sakai, C., Zhao, H., Kobayashi, T. Hearing, V.J. (1998). Human tyrosinase related protein-1 (TRP-1) does not function as a DHICA oxidase activity in contrast to murine TRP-1. Exp. Dermatol. 7, 198 204.
7. Boissy, R.E., Huizing, M. Gahl, W. (2006) Biogenesis of melanosomes. In The Pigmentary System, J.J. NORDLUND, R.E. BOISSY, V.J. HEARING, R.A. KING, W.S. OETTING J.-P. ORTONNE, eds Malden, MA : Blackwell Publishing pp. 155 170.
8. Braasch, I., Salzburger, W. Meyer, A. (2006). Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Mol. Biol. Evol. 23, 1192 1202.
9. Braasch, I., Schartl, M. Volff, J.N. (2007). Evolution of pigment synthesis pathways by gene and genome duplication in fish. BMC Evol. Biol. 7, 74.
10. Camp, E., Badhwar, P., Mann, G.J. Lardelli, M. (2003). Expression analysis of a tyrosinase promoter sequence in zebrafish. Pigment Cell Res. 16, 117 126.
11. Cresko, W.A., Yan, Y.L., Baltrus, D.A., Amores, A., Singer, A., Rodriguez-Mari, A. Postlethwait, J.H. (2003). Genome duplication, subfunction partitioning, and lineage divergence: Sox9 in stickleback and zebrafish. Dev. Dyn. 228, 480 489.
12. Forshew, T., Khaliq, S., Tee, L., Smith, U., Johnson, C.A., Mehdi, S.Q. Maher, E.R. (2005). Identification of novel TYR and TYRP1 mutations in oculocutaneous albinism. Clin. Genet. 68, 182 184.
13. Fujii, R. (1993) Coloration and chromatophores. In The Physiology of Fishes, D.H. EVANS, ed Boca Raton, Florida : CRC Press pp. 535 562.
14. Fukamachi, S., Shimada, A. Shima, A. (2001). Mutations in the gene encoding B, a novel transporter protein, reduce melanin content in medaka. Nat. Genet. 28, 381 385.
15. Fukamachi, S., Asakawa, S., Wakamatsu, Y., Shimizu, N., Mitani, H. Shima, A. (2004). Conserved function of medaka pink-eyed dilution in melanin synthesis and its divergent transcriptional regulation in gonads among vertebrates. Genetics 168, 1519 1527.
16. Furutani-Seiki, M. Wittbrodt, J. (2004). Medaka and zebrafish, an evolutionary twin study. Mech. Dev. 121, 629 637.
17. Gratten, J., Beraldi, D., Lowder, B.V., Mcrae, A.F., Visscher, P.M., Pemberton, J.M. Slate, J. (2007). Compelling evidence that a single nucleotide substitution in TYRP1 is responsible for coat-colour polymorphism in a free-living population of Soay sheep. Proc. Biol. Sci. 274, 619 626.
18. Hall, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic. Acids. Symp. Ser 41, 95 98.
19. Hauptmann, G. Gerster, T. (1994). Two-color whole-mount in situ hybridization to vertebrate and Drosophila embryos. Trends Genet. 10, 266.
20. Irimia, M. Roy, S.W. (2008). Spliceosomal introns as tools for genomic and evolutionary analysis. Nucleic Acids Res. 36, 1703 1712.
21. Iwamatsu, T. (2004). Stages of normal development in the medaka Oryzias latipes. Mech. Dev. 121, 605 618.
22. Jackson, I.J. (1988). A cDNA encoding tyrosinase-related protein maps to the brown locus in mouse. Proc. Natl. Acad. Sci. U S A 85, 4392 4396.
23. Jimenez-Cervantes, C., Solano, F., Kobayashi, T., Urabe, K., Hearing, V.J., Lozano, J.A. Garcia-Borron, J.C. (1994). A new enzymatic function in the melanogenic pathway The 5,6-dihydroxyindole-2-carboxylic acid oxidase activity of tyrosinase-related protein-1 (TRP1). J. Biol. Chem. 269, 17993 18000.
24. Jovelin, R., He, X., Amores, A., Yan, Y.L., Shi, R., Qin, B., Roe, B., Cresko, W.A. Postlethwait, J.H. (2007). Duplication and divergence of fgf8 functions in teleost development and evolution. J. Exp. Zool. B Mol. Dev. Evol. 308, 730 743.
25. Kelsh, R.N., Schmid, B. Eisen, J.S. (2000). Genetic analysis of melanophore development in zebrafish embryos. Dev. Biol. 225, 277 293.
26. Kidson, S.H., Richards, P.D., Rawoot, F. Kromberg, J.G. (1993). An ultrastructural study of melanocytes and melanosomes in the skin and hair bulbs of rufous albinos. Pigment Cell Res. 6, 209 214.
27. Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B. Schilling, T.F. (1995). Stages of embryonic development of the zebrafish. Dev. Dyn. 203, 253 310.
28. Klüver, N., Kondo, M., Herpin, A., Mitani, H. Schartl, M. (2005). Divergent expression patterns of Sox9 duplicates in teleosts indicate a lineage specific subfunctionalization. Dev. Genes. Evol. 215, 297 305.
29. Kobayashi, T. Hearing, V.J. (2007). Direct interaction of tyrosinase with Tyrp1 to form heterodimeric complexes in vivo. J. Cell Sci. 120, 4261 4268.
30. Kobayashi, T., Urabe, K., Winder, A., Jimenez-Cervantes, C., Imokawa, G., Brewington, T., Solano, F., Garcia-Borron, J.C. Hearing, V.J. (1994a). Tyrosinase related protein 1 (TRP1) functions as a DHICA oxidase in melanin biosynthesis. EMBO J. 13, 5818 5825.
31. Kobayashi, T., Urabe, K., Winder, A., Tsukamoto, K., Brewington, T., Imokawa, G., Potterf, B. Hearing, V.J. (1994b). DHICA oxidase activity of TRP1 and interactions with other melanogenic enzymes. Pigment Cell Res. 7, 227 234.
32. Kobayashi, T., Imokawa, G., Bennett, D.C. Hearing, V.J. (1998). Tyrosinase stabilization by Tyrp1 (the brown locus protein). J. Biol. Chem. 273, 31801 31805.
33. Koga, A., Inagaki, H., Bessho, Y. Hori, H. (1995). Insertion of a novel transposable element in the tyrosinase gene is responsible for an albino mutation in the medaka fish, Oryzias latipes. Mol. Gen. Genet. 249, 400 405.
34. Krakauer, D.C. Nowak, M.A. (1999). Evolutionary preservation of redundant duplicated genes. Semin. Cell Dev. Biol. 10, 555 559.
35. Lamoreux, M.L., Kelsh, R.N., Wakamatsu, Y. Ozato, K. (2005). Pigment pattern formation in the medaka embryo. Pigment Cell Res. 18, 64 73.
36. Lister, J.A., Robertson, C.P., Lepage, T., Johnson, S.L. Raible, D.W. (1999). Nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate. Development 126, 3757 3767.
37. Manga, P., Kromberg, J.G., Box, N.F., Sturm, R.A., Jenkins, T. Ramsay, M. (1997). Rufous oculocutaneous albinism in southern African Blacks is caused by mutations in the TYRP1 gene. Am. J. Hum. Genet. 61, 1095 1101.
38. Moyer, F.H. (1966). Genetic variations in the fine structure and ontogeny of mouse melanin granules. Am. Zool. 6, 43 66.
39. Nadeau, N.J., Mundy, N.I., Gourichon, D. Minvielle, F. (2007). Association of a single-nucleotide substitution in TYRP1 with roux in Japanese quail (Coturnix japonica). Anim. Genet. 38, 609 613.
40. Nowak, M.A., Boerlijst, M.C., Cooke, J. Maynard Smith, J. (1997). Evolution of genetic redundancy. Nature 388, 167 171.
41. Oetting, W.S. Setaluri, V. (2006) The tyrosinase gene family. In The Pigmentary System, J.J. NORDLUND, R.E. BOISSY, V.J. HEARING, R.A. KING, W.S. OETTING J.-P. ORTONNE, eds Malden, MA : Blackwell Publishing pp. 213 229.
42. Olivares, C., Jimenez-Cervantes, C., Lozano, J.A., Solano, F. Garcia-Borron, J.C. (2001). The 5,6-dihydroxyindole-2-carboxylic acid (DHICA) oxidase activity of human tyrosinase. Biochem. J. 354, 131 139.
43. Ozeki, H., Ito, S., Wakamatsu, K. Hirobe, T. (1995). Chemical characterization of hair melanins in various coat-color mutants of mice. J. Invest. Dermatol. 105, 361 366.
44. Ozeki, H., Wakamatsu, K., Ito, S. Ishiguro, I. (1997). Chemical characterization of eumelanins with special emphasis on 5,6-dihydroxyindole-2- carboxylic acid content and molecular size. Anal. Biochem. 248, 149 157.
45. Pickart, M.A., Sivasubbu, S., Nielsen, A.L., Shriram, S., King, R.A. Ekker, S.C. (2004). Functional genomics tools for the analysis of zebrafish pigment. Pigment Cell Res. 17, 461 470.
46. Postlethwait, J., Amores, A., Cresko, W., Singer, A. Yan, Y.L. (2004). Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet. 20, 481 490.
47. Rittenhouse, E. (1968). Genetic effect on fine structure and development of pigment granules in mouse hair bulb melanocytes. I. The b and d loci. Dev. Biol. 17, 351 365.
48. Rooryck, C., Morice-Picard, F., Elcioglu, N.H., Lacombe, D., Taieb, A. Arveiler, B. (2008). Molecular diagnosis of oculocutaneous albinism: new mutations in the OCA1-4 genes and practical aspects. Pigment Cell Melanoma Res. 21, 583 587.
49. Sarangarajan, R. Boissy, R.E. (2001). Tyrp1 and oculocutaneous albinism type 3. Pigment Cell Res. 14, 437 444.
50. Schmidt-Kuntzel, A., Eizirik, E., O'brien, S.J. Menotti-Raymond, M. (2005). Tyrosinase and tyrosinase related protein 1 alleles specify domestic cat coat color phenotypes of the albino and brown loci. J. Hered. 96, 289 301.
51. Schmutz, S.M., Berryere, T.G. Goldfinch, A.D. (2002). TYRP1 and MC1R genotypes and their effects on coat color in dogs. Mamm. Genome 13, 380 387.
52. Shibahara, S., Tomita, Y., Yoshizawa, M., Shibata, K. Tagami, H. (1992). Identification of mutations in the pigment cell-specific gene located at the brown locus in mouse. Pigment Cell Res. 3 (Suppl 2 90 95.
53. Solano, F. García-Borrón, J. (2006) Enzymology of melanin formation. In The Pigmentary System, J.J. NORDLUND, R.E. BOISSY, V.J. HEARING, R.A. KING, W.S. OETTING J.-P. ORTONNE, eds Malden, MA : Blackwell Publishing pp. 261 281.
54. Thompson, J.D., Higgins, D.G. Gibson, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673 4680.
55. Tomita, H. Hishida, T. (1961). On the phenol oxidase of embryonic and larval stages of the medaca (Oryzias latipes). Embryologia 5, 423 439.
56. Vavouri, T., Semple, J.I. Lehner, B. (2008). Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution. Trends Genet. 24, 485 488.
57. Wagner, A. (2008). Gene duplications, robustness and evolutionary innovations. BioEssays 30, 367 373.
58. Winder, A., Kobayashi, T., Tsukamoto, K., Urabe, K., Aroca, P., Kameyama, K. Hearing, V.J. (1994). The tyrosinase gene family - interactions of melanogenic proteins to regulate melanogenesis. Cell. Mol. Biol. Res. 40, 613 626.