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Volumn 8, Issue 3, 2013, Pages

Evolutionary History of the Plant Pathogenic Bacterium Xanthomonas axonopodis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CLADISTICS; CLONAL EVOLUTION; CONTROLLED STUDY; ECOLOGICAL SPECIALIZATION; GENE FLOW; GENE TRANSFER; GENEALOGY; GENETIC ASSOCIATION; GENETIC RECOMBINATION; HOUSEKEEPING GENE; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; ORGANISMS BY GEOGRAPHICAL DISTRIBUTION; POINT MUTATION; RNA SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SPECIES DIVERSITY; UNINDEXED SEQUENCE; VIRULENCE ASSOCIATED GENE; XANTHOMONAS AXONOPODIS;

EID: 84874711044     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0058474     Document Type: Article
Times cited : (71)

References (87)
  • 1
    • 53749102606 scopus 로고    scopus 로고
    • Natural selection on a major armor gene in threespine stickleback
    • Barrett R, Rogers SM, Schluter D, (2008) Natural selection on a major armor gene in threespine stickleback. Science 322: 255-258.
    • (2008) Science , vol.322 , pp. 255-258
    • Barrett, R.1    Rogers, S.M.2    Schluter, D.3
  • 2
    • 77954815758 scopus 로고    scopus 로고
    • Linking the emergence of fungal plant diseases with ecological speciation
    • Giraud T, Gladieux P, Gavrilets S, (2010) Linking the emergence of fungal plant diseases with ecological speciation. Trends Ecol Evol 25: 387-395.
    • (2010) Trends Ecol Evol , vol.25 , pp. 387-395
    • Giraud, T.1    Gladieux, P.2    Gavrilets, S.3
  • 3
    • 3042750437 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA
    • Coyne JA, Orr HA (2004) Speciation. Sinauer Associates, Sunderland, MA. 545 pp.
    • (2004) Speciation , pp. 545
    • Coyne, J.A.1    Orr, H.A.2
  • 4
    • 78149383270 scopus 로고    scopus 로고
    • Divergence with Gene Flow: Models and Data
    • Pinho C, Hey J, (2010) Divergence with Gene Flow: Models and Data. Ann Rev Ecol Evol Syst 41: 215-230.
    • (2010) Ann Rev Ecol Evol Syst , vol.41 , pp. 215-230
    • Pinho, C.1    Hey, J.2
  • 5
    • 51849086869 scopus 로고    scopus 로고
    • The origins of plant pathogens in agro-ecosystems
    • Stukenbrock EH, McDonald BA, (2008) The origins of plant pathogens in agro-ecosystems. Ann Rev Phytopathol 46: 75-100.
    • (2008) Ann Rev Phytopathol , vol.46 , pp. 75-100
    • Stukenbrock, E.H.1    McDonald, B.A.2
  • 6
    • 4544348578 scopus 로고    scopus 로고
    • Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers
    • Anderson P, Cunningham A, Patel N, Morales F, Epstein P, et al. (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. Trends Ecol Evol 19: 535-544.
    • (2004) Trends Ecol Evol , vol.19 , pp. 535-544
    • Anderson, P.1    Cunningham, A.2    Patel, N.3    Morales, F.4    Epstein, P.5
  • 7
    • 33846839389 scopus 로고    scopus 로고
    • Origin and Domestication of the Fungal Wheat Pathogen Mycosphaerella graminicola via Sympatric Speciation
    • Stukenbrock EH, Banke S, Javan-Nikkhah M, McDonald BA, (2007) Origin and Domestication of the Fungal Wheat Pathogen Mycosphaerella graminicola via Sympatric Speciation. Mol Biol Evol 24: 398-411.
    • (2007) Mol Biol Evol , vol.24 , pp. 398-411
    • Stukenbrock, E.H.1    Banke, S.2    Javan-Nikkhah, M.3    McDonald, B.A.4
  • 8
    • 78650492295 scopus 로고    scopus 로고
    • Maintenance of Fungal Pathogen Species That Are Specialized to Different Hosts: Allopatric Divergence and Introgression through Secondary Contact
    • Gladieux P, Vercken E, Fontaine MC, Hood ME, Jonot O, et al. (2011) Maintenance of Fungal Pathogen Species That Are Specialized to Different Hosts: Allopatric Divergence and Introgression through Secondary Contact. Mol Biol Evol 28: 459-471.
    • (2011) Mol Biol Evol , vol.28 , pp. 459-471
    • Gladieux, P.1    Vercken, E.2    Fontaine, M.C.3    Hood, M.E.4    Jonot, O.5
  • 9
    • 0036874116 scopus 로고    scopus 로고
    • Sexual isolation and speciation in bacteria
    • Cohan FM, (2002) Sexual isolation and speciation in bacteria. Genetica 116: 359-370.
    • (2002) Genetica , vol.116 , pp. 359-370
    • Cohan, F.M.1
  • 10
    • 0000296003 scopus 로고
    • International standards for naming pathovars of phytopathogenic bacteria and a list of pathovar names and pathotype strains
    • Dye DW, Bradbury JF, Goto M, Hayward AC, Lelliott RA, et al. (1980) International standards for naming pathovars of phytopathogenic bacteria and a list of pathovar names and pathotype strains. Rev Plant Pathol 59: 153-168.
    • (1980) Rev Plant Pathol , vol.59 , pp. 153-168
    • Dye, D.W.1    Bradbury, J.F.2    Goto, M.3    Hayward, A.C.4    Lelliott, R.A.5
  • 11
    • 57749188258 scopus 로고    scopus 로고
    • Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria
    • Costechareyre D, Bertolla F, Nesme X, (2009) Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria. Mol Biol Evol 26: 167-176.
    • (2009) Mol Biol Evol , vol.26 , pp. 167-176
    • Costechareyre, D.1    Bertolla, F.2    Nesme, X.3
  • 12
    • 55249124606 scopus 로고    scopus 로고
    • The origins of ecological diversity in prokaryotes
    • Cohan FM, Koeppel AF, (2008) The origins of ecological diversity in prokaryotes. Curr Biol 18: R1024-R1034.
    • (2008) Curr Biol , vol.18
    • Cohan, F.M.1    Koeppel, A.F.2
  • 13
    • 0002180234 scopus 로고
    • Swings JC, Civerolo EL, editors. Xanthomonas. Chapman and Hall: London
    • Hayward AC (1993) The hosts of Xanthomonas. In Swings JC, Civerolo EL, editors. Xanthomonas. Chapman and Hall: London. 1-119.
    • (1993) The hosts of Xanthomonas , pp. 1-119
    • Hayward, A.C.1
  • 15
    • 0034086832 scopus 로고    scopus 로고
    • Synopsis on the taxonomy of the genus Xanthomonas
    • Vauterin L, Rademaker J, Swings J, (2000) Synopsis on the taxonomy of the genus Xanthomonas. Phytopathology 90: 677-682.
    • (2000) Phytopathology , vol.90 , pp. 677-682
    • Vauterin, L.1    Rademaker, J.2    Swings, J.3
  • 16
    • 0034068106 scopus 로고    scopus 로고
    • Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system
    • Rademaker JLW, Hoste B, Louws FJ, Kersters K, Swings J, et al. (2000) Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system. Int J Syst Evol Microbiol 50: 665-677.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 665-677
    • Rademaker, J.L.W.1    Hoste, B.2    Louws, F.J.3    Kersters, K.4    Swings, J.5
  • 18
    • 59949101604 scopus 로고    scopus 로고
    • Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas
    • Ah-You N, Gagnevin L, Grimont PAD, Brisse S, Nesme X, et al. (2009) Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas. Int J Syst Evol Microbiol 59: 306-318.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 306-318
    • Ah-You, N.1    Gagnevin, L.2    Grimont, P.A.D.3    Brisse, S.4    Nesme, X.5
  • 19
    • 37449010217 scopus 로고    scopus 로고
    • Phylogenetic analysis of Xanthomonas species by comparison of partial gyrase B gene sequences
    • Parkinson N, Aritua V, Heeney J, Cowie C, Bew J, et al. (2007) Phylogenetic analysis of Xanthomonas species by comparison of partial gyrase B gene sequences. Int J Syst Evol Microbiol 57: 2881-2887.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2881-2887
    • Parkinson, N.1    Aritua, V.2    Heeney, J.3    Cowie, C.4    Bew, J.5
  • 20
    • 63449114590 scopus 로고    scopus 로고
    • Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences
    • Parkinson N, Cowie C, Heeney J, Stead D, (2009) Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences. Int J Syst Evol Microbiol 59: 264-274.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 264-274
    • Parkinson, N.1    Cowie, C.2    Heeney, J.3    Stead, D.4
  • 22
    • 77949375230 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae
    • Bui Thi Ngoc L, Vernière C, Jouen E, Ah-You N, Lefeuvre P, et al. (2010) Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae. Int J Syst Evol Microbiol 60: 515-525.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 515-525
    • Bui Thi Ngoc, L.1    Vernière, C.2    Jouen, E.3    Ah-You, N.4    Lefeuvre, P.5
  • 23
    • 80051735866 scopus 로고    scopus 로고
    • Evolution and population genetics of exotic and re-emerging pathogens: novel tools and approaches
    • Grünwald NJ, Goss EM, (2011) Evolution and population genetics of exotic and re-emerging pathogens: novel tools and approaches. Annu Rev Phytopathol 49: 249-267.
    • (2011) Annu Rev Phytopathol , vol.49 , pp. 249-267
    • Grünwald, N.J.1    Goss, E.M.2
  • 24
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X, Falush D, (2007) Inference of bacterial microevolution using multilocus sequence data. Genetics 175: 1251-1266.
    • (2007) Genetics , vol.175 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 25
    • 84870336564 scopus 로고    scopus 로고
    • Sequence-based analysis of bacterial population structures
    • Robinson DA, Falush D, Feil E (eds), John Wiley and Sons Inc: New Jersey
    • Didelot X (2010) Sequence-based analysis of bacterial population structures. In: Robinson DA, Falush D, Feil E (eds) Bacterial population genetics in infectious disease. John Wiley and Sons Inc: New Jersey. 103-120.
    • (2010) Bacterial population genetics in infectious disease , pp. 103-120
    • Didelot, X.1
  • 26
    • 77952294620 scopus 로고    scopus 로고
    • Isolation with migration models for more than two populations
    • Hey J, (2010) Isolation with migration models for more than two populations. Mol Biol Evol 27: 905-920.
    • (2010) Mol Biol Evol , vol.27 , pp. 905-920
    • Hey, J.1
  • 27
    • 69949188053 scopus 로고    scopus 로고
    • A «Repertoire for Repertoire» Hypothesis: Repertoires of type three effectors are candidate determinants of host specificity in Xanthomonas
    • Hajri A, Brin C, Hunault G, Lardeux F, Lemaire C, et al. (2009) A «Repertoire for Repertoire» Hypothesis: Repertoires of type three effectors are candidate determinants of host specificity in Xanthomonas. PLoS ONE 4: e6632.
    • (2009) PLoS ONE , vol.4
    • Hajri, A.1    Brin, C.2    Hunault, G.3    Lardeux, F.4    Lemaire, C.5
  • 28
    • 79952478288 scopus 로고    scopus 로고
    • Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads
    • Mhedbi-Hajri N, Darrasse A, Pigné S, Durand K, Fouteau S, et al. (2011) Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads. BMC Evol Biol 11: 67.
    • (2011) BMC Evol Biol , vol.11 , pp. 67
    • Mhedbi-Hajri, N.1    Darrasse, A.2    Pigné, S.3    Durand, K.4    Fouteau, S.5
  • 30
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden R, (1996) The Staden sequence analysis package. Mol Biotech 5: 233-241.
    • (1996) Mol Biotech , vol.5 , pp. 233-241
    • Staden, R.1
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 32
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 33
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 34
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson RR, Kaplan NL, (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 35
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 36
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: recombination detection and analysis from sequence alignments
    • Martin DP, Williamson C, Posada D, (2005a) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 37
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin D, Rybicki E, (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 38
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam M, Sawyer S, Fauquet CM, (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 39
    • 0026708873 scopus 로고
    • Analysing the mosaic structure of genes
    • Maynard Smith J, (1992) Analysing the mosaic structure of genes. J Mol Evol 34: 126-129.
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 40
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • Posada D, Crandall K, (2001) Evaluation of methods for detecting recombination from DNA sequences: Computer simulations. Proc Nat Acad Sci USA 24: 13757-13762.
    • (2001) Proc Nat Acad Sci USA , vol.24 , pp. 13757-13762
    • Posada, D.1    Crandall, K.2
  • 41
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Martin DP, Posada D, Crandall KA, Williamson C, (2005b) A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21: 98-102.
    • (2005) AIDS Res Hum Retroviruses , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 42
    • 0033753825 scopus 로고    scopus 로고
    • Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs MJ, Armstrong JS, Gibbs AJ, (2000) Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16: 573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 43
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • Boni MF, Posada D, Feldman MW, (2007) An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176: 1035-1047.
    • (2007) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 45
    • 58349112353 scopus 로고    scopus 로고
    • Coalescent genealogy samplers: windows into population history
    • Kuhner MK, (2008) Coalescent genealogy samplers: windows into population history. Trends Ecol Evol 24: 86-93.
    • (2008) Trends Ecol Evol , vol.24 , pp. 86-93
    • Kuhner, M.K.1
  • 47
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA, (1975) On the number of segregating sites in genetical models without recombination. Theoret Pop Biol 7: 256-276.
    • (1975) Theoret Pop Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 48
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 49
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH, (1993) Statistical tests of neutrality of mutations. Genetics 133: 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 50
    • 0000625869 scopus 로고
    • Analysis tables of statistical tests
    • Rice W, (1989) Analysis tables of statistical tests. Evolution 43: 223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.1
  • 51
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
    • Hey J, Nielsen R, (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 52
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.1    Rambaut, A.2
  • 53
    • 60549111699 scopus 로고    scopus 로고
    • Bayesian inference of population size history from multiple loci
    • doi: 10.1186/1471-2148-8-289
    • Heled J, Drummond A, (2008) Bayesian inference of population size history from multiple loci. BMC Evol Biol 8: 289 doi:10.1186/1471-2148-8-289.
    • (2008) BMC Evol Biol , vol.8 , pp. 289
    • Heled, J.1    Drummond, A.2
  • 54
    • 0024920644 scopus 로고
    • Pattern and Patchiness in Plant-Pathogen Interactions-Causes and Consequences
    • Burdon JJ, Jarosz AM, Kirby GC, (1989) Pattern and Patchiness in Plant-Pathogen Interactions-Causes and Consequences. Ann Rev Ecol Syst 20: 119-136.
    • (1989) Ann Rev Ecol Syst , vol.20 , pp. 119-136
    • Burdon, J.J.1    Jarosz, A.M.2    Kirby, G.C.3
  • 55
    • 1342290081 scopus 로고    scopus 로고
    • Population differentiation and recombination in wheat scab populations of Gibberella zeae from the United States
    • Zeller KA, Bowden RL, Leslie JF, (2004) Population differentiation and recombination in wheat scab populations of Gibberella zeae from the United States. Mol Ecol 13: 563-571.
    • (2004) Mol Ecol , vol.13 , pp. 563-571
    • Zeller, K.A.1    Bowden, R.L.2    Leslie, J.F.3
  • 56
    • 0035076088 scopus 로고    scopus 로고
    • Differences in population structure of the anther smut fungus Microbotryum violaceum on two closely related host species, Silene latifolia and S. dioica
    • Bucheli E, Gautschi B, Shykoff JA, (2001) Differences in population structure of the anther smut fungus Microbotryum violaceum on two closely related host species, Silene latifolia and S. dioica. Mol Ecol 10: 285-294.
    • (2001) Mol Ecol , vol.10 , pp. 285-294
    • Bucheli, E.1    Gautschi, B.2    Shykoff, J.A.3
  • 57
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J, Stephens M, Donnelly PJ, (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.1    Stephens, M.2    Donnelly, P.J.3
  • 58
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard J, (2003) Inference of population structure using multilocus genotype data linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.3
  • 59
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software structure: a simulation study
    • Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 60
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Rosenberg NA, (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
    • (2007) Bioinformatics , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 62
    • 77954065669 scopus 로고    scopus 로고
    • A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus
    • Nübel U, Dordel J, Kurt K, Strommenger B, Westh H, et al. (2010) A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus. PLoS Pathogens 6: e1000855.
    • (2010) PLoS Pathogens , vol.6
    • Nübel, U.1    Dordel, J.2    Kurt, K.3    Strommenger, B.4    Westh, H.5
  • 63
    • 0023514080 scopus 로고
    • Evolution in bacteria: evidence for a universal substitution rate in cellular genomes
    • Ochman H, Wilson AC, (1987) Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J Mol Evol 26: 74-86.
    • (1987) J Mol Evol , vol.26 , pp. 74-86
    • Ochman, H.1    Wilson, A.C.2
  • 64
    • 78650757368 scopus 로고    scopus 로고
    • Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland
    • Sheppard SK, Dallas JF, Wilson DJ, Stachan NJC, McCarty ND, et al. (2010) Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland. PLoS ONE 5: e15708.
    • (2010) PLoS ONE , vol.5
    • Sheppard, S.K.1    Dallas, J.F.2    Wilson, D.J.3    Stachan, N.J.C.4    McCarty, N.D.5
  • 65
    • 77957331293 scopus 로고    scopus 로고
    • Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families
    • Morelli G, Didelot X, Kusecek B, Schwarz S, Falush D, et al. (2010) Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet 6: e1001036.
    • (2010) PLoS Genet , vol.6
    • Morelli, G.1    Didelot, X.2    Kusecek, B.3    Schwarz, S.4    Falush, D.5
  • 66
    • 84856652357 scopus 로고    scopus 로고
    • Insights from genomic comparisons of genetically monomorphic bacterial pathogens
    • Achtman M, (2012) Insights from genomic comparisons of genetically monomorphic bacterial pathogens. Phil Trans R Soc B 367: 860-867.
    • (2012) Phil Trans R Soc B , vol.367 , pp. 860-867
    • Achtman, M.1
  • 67
    • 80052380439 scopus 로고    scopus 로고
    • The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity
    • Cai R, Lewis J, Yan S, Liu h, Clarke CR, et al. (2011) The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. PLoS Pathogens 7: e1002130.
    • (2011) PLoS Pathogens , vol.7
    • Cai, R.1    Lewis, J.2    Yan, S.3    Liu, H.4    Clarke, C.R.5
  • 68
  • 69
    • 67649403394 scopus 로고    scopus 로고
    • Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens
    • Deitsch KW, Lukehart SA, Stringer JR, (2009) Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens. Nat Rev Microbiol 7: 493-503.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 493-503
    • Deitsch, K.W.1    Lukehart, S.A.2    Stringer, J.R.3
  • 70
    • 65549108485 scopus 로고    scopus 로고
    • Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14
    • doi: 10.1186/1471-2164-10-158
    • Ding F, Tang P, Hsu M-H, Cui P, Hu S, et al. (2009) Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. BMC Genomics 10: 158 doi:10.1186/1471-2164-10-158.
    • (2009) BMC Genomics , vol.10 , pp. 158
    • Ding, F.1    Tang, P.2    Hsu, M.-H.3    Cui, P.4    Hu, S.5
  • 71
    • 77149149718 scopus 로고    scopus 로고
    • Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution
    • Oh PL, Benson AK, Peterson DA, Patil PB, Moriyama EN, et al. (2011) Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. ISME J 4: 377-387.
    • (2011) ISME J , vol.4 , pp. 377-387
    • Oh, P.L.1    Benson, A.K.2    Peterson, D.A.3    Patil, P.B.4    Moriyama, E.N.5
  • 72
    • 77958120655 scopus 로고    scopus 로고
    • Host imprints on bacterial genomes-rapid, divergent evolution in individual patients
    • Zdziarski J, Brzuszkiewicz E, Wullt B, Liesegang H, Biran D, et al. (2010) Host imprints on bacterial genomes-rapid, divergent evolution in individual patients. PLoS Pathogens 6: e1001078.
    • (2010) PLoS Pathogens , vol.6
    • Zdziarski, J.1    Brzuszkiewicz, E.2    Wullt, B.3    Liesegang, H.4    Biran, D.5
  • 73
    • 1642319596 scopus 로고    scopus 로고
    • Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen
    • Sarkar SF, Guttman DS, (2004) Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol 70: 1999-2012.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1999-2012
    • Sarkar, S.F.1    Guttman, D.S.2
  • 74
    • 44249090672 scopus 로고    scopus 로고
    • Assessment of the genetic diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a basis to identify putative pathogenicity genes and a type III secretion system of the SPI-1 family by multiple suppression subtractive hybridizations
    • Alavi SM, Sanjari S, Durand F, Brin C, Manceau C, et al. (2008) Assessment of the genetic diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a basis to identify putative pathogenicity genes and a type III secretion system of the SPI-1 family by multiple suppression subtractive hybridizations. Appl Environ Microbiol 74: 3295-3301.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3295-3301
    • Alavi, S.M.1    Sanjari, S.2    Durand, F.3    Brin, C.4    Manceau, C.5
  • 76
    • 70350176199 scopus 로고    scopus 로고
    • Frequency spectrum neutrality tests: one for all and all for one
    • Achaz G, (2009) Frequency spectrum neutrality tests: one for all and all for one. Genetics 183: 249-258.
    • (2009) Genetics , vol.183 , pp. 249-258
    • Achaz, G.1
  • 77
    • 12344311513 scopus 로고    scopus 로고
    • Persistence of Xanthomonas axonopodis pv. vignicola in weeds and crop debris and identification of Sphenostylis stenocarpa as a potential new host
    • Sikirou R, Wydra K, (2004) Persistence of Xanthomonas axonopodis pv. vignicola in weeds and crop debris and identification of Sphenostylis stenocarpa as a potential new host. Europ J Plant Pathol 110: b939-947.
    • (2004) Europ J Plant Pathol , vol.110
    • Sikirou, R.1    Wydra, K.2
  • 78
    • 0035140317 scopus 로고    scopus 로고
    • The role of crop debris and weeds in the epidemiology of bacterial leaf spot of lettuce in California
    • Barak JD, Koike ST, Gilbertson RL, (2001) The role of crop debris and weeds in the epidemiology of bacterial leaf spot of lettuce in California. Plant Dis 85: 169-178.
    • (2001) Plant Dis , vol.85 , pp. 169-178
    • Barak, J.D.1    Koike, S.T.2    Gilbertson, R.L.3
  • 79
    • 77958548557 scopus 로고    scopus 로고
    • Transmission of plant-pathogenic bacteria by nonhost seeds without induction of an associated defense reaction at emergence
    • Darrasse A, Darsonval A, Boureau T, Brisset MN, Durand K, et al. (2010) Transmission of plant-pathogenic bacteria by nonhost seeds without induction of an associated defense reaction at emergence. Appl Environ Microbiol 76: 6787-6796.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6787-6796
    • Darrasse, A.1    Darsonval, A.2    Boureau, T.3    Brisset, M.N.4    Durand, K.5
  • 80
    • 58549084151 scopus 로고    scopus 로고
    • A comparison of homologous recombination rates in bacteria and archaea
    • Vos M, Didelot X, (2009) A comparison of homologous recombination rates in bacteria and archaea. ISME J 3: 199-208.
    • (2009) ISME J , vol.3 , pp. 199-208
    • Vos, M.1    Didelot, X.2
  • 81
    • 29144526081 scopus 로고    scopus 로고
    • Multilocus sequence type system for the plant pathogen Xylella fastidiosa and relative contributions of recombination and point mutation to clonal diversity
    • Scally M, Schuenzel EL, Stouhamer R, Nunney L, (2005) Multilocus sequence type system for the plant pathogen Xylella fastidiosa and relative contributions of recombination and point mutation to clonal diversity. Appl Environ Microbiol 71: 8491-8499.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8491-8499
    • Scally, M.1    Schuenzel, E.L.2    Stouhamer, R.3    Nunney, L.4
  • 82
    • 44249087418 scopus 로고    scopus 로고
    • Role of recombination in the evolution of the model plant pathogen Pseudomonas syringae pv. tomato DC3000, a very atypical tomato strain
    • Yan S, Liu H, Mohr TJ, Jenrette J, Chiodini R, et al. (2008) Role of recombination in the evolution of the model plant pathogen Pseudomonas syringae pv. tomato DC3000, a very atypical tomato strain. Appl Environ Microbiol 74: 3171-3181.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3171-3181
    • Yan, S.1    Liu, H.2    Mohr, T.J.3    Jenrette, J.4    Chiodini, R.5
  • 83
    • 40249113894 scopus 로고    scopus 로고
    • The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle
    • Morris CE, Sands DC, Vinatzer BA, Glaux C, Guilbaud C, et al. (2008) The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle. ISME J 2: 321-334.
    • (2008) ISME J , vol.2 , pp. 321-334
    • Morris, C.E.1    Sands, D.C.2    Vinatzer, B.A.3    Glaux, C.4    Guilbaud, C.5
  • 85
    • 22744445845 scopus 로고    scopus 로고
    • Pathogenic and genetic relatedness among Xanthomonas axonopodis pv. allii and other pathovars of X. axonopodis
    • Gent DH, Al-Saadi A, Gabriel DW, Louws F, Ishimaru C, et al. (2005) Pathogenic and genetic relatedness among Xanthomonas axonopodis pv. allii and other pathovars of X. axonopodis. Phytopathology 95: 918-925.
    • (2005) Phytopathology , vol.95 , pp. 918-925
    • Gent, D.H.1    Al-Saadi, A.2    Gabriel, D.W.3    Louws, F.4    Ishimaru, C.5
  • 86
    • 33947252171 scopus 로고    scopus 로고
    • Characterization of ISXax1, a novel insertion sequence restricted to Xanthomonas axonopodis pv. phaseoli (variants fuscans and non-fuscans) and Xanthomonas axonopodis pv. vesicatoria
    • Alavi MS, Poussier S, Manceau C, (2007) Characterization of ISXax1, a novel insertion sequence restricted to Xanthomonas axonopodis pv. phaseoli (variants fuscans and non-fuscans) and Xanthomonas axonopodis pv. vesicatoria. Appl Environ Microbiol 73: 1678-1682.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1678-1682
    • Alavi, M.S.1    Poussier, S.2    Manceau, C.3
  • 87
    • 33749554389 scopus 로고    scopus 로고
    • The evolutionary origin of Xanthomonadales genomes and the nature of the horizontal gene transfer process
    • Comas I, Moya A, Azad RK, Lawrence JG, Gonzalez-Candelas F, (2006) The evolutionary origin of Xanthomonadales genomes and the nature of the horizontal gene transfer process. Mol Biol Evol 23: 2049-2057.
    • (2006) Mol Biol Evol , vol.23 , pp. 2049-2057
    • Comas, I.1    Moya, A.2    Azad, R.K.3    Lawrence, J.G.4    Gonzalez-Candelas, F.5


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