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Volumn 14, Issue 1, 2013, Pages

Towards defining the chloroviruses: A genomic journey through a genus of large DNA viruses

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROVIRUS PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN;

EID: 84874675827     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-158     Document Type: Article
Times cited : (74)

References (48)
  • 1
    • 0035167322 scopus 로고    scopus 로고
    • Common origin of four diverse families of large eukaryotic DNA viruses
    • 10.1128/JVI.75.23.11720-11734.2001, 114758, 11689653
    • Iyer LM, Aravind L, Koonin EV. Common origin of four diverse families of large eukaryotic DNA viruses. J Virol 2001, 75:11720-11734. 10.1128/JVI.75.23.11720-11734.2001, 114758, 11689653.
    • (2001) J Virol , vol.75 , pp. 11720-11734
    • Iyer, L.M.1    Aravind, L.2    Koonin, E.V.3
  • 2
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • 10.1016/j.virusres.2006.01.009, 16494962
    • Iyer LM, Balaji S, Koonin EV, Aravind L. Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res 2006, 117:156-184. 10.1016/j.virusres.2006.01.009, 16494962.
    • (2006) Virus Res , vol.117 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 3
    • 74549198854 scopus 로고    scopus 로고
    • Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution
    • 10.1186/1743-422X-6-223, 2806869, 20017929
    • Yutin N, Wolf YI, Raoult D, Koonin EV. Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution. Virol J 2009, 6:223. 10.1186/1743-422X-6-223, 2806869, 20017929.
    • (2009) Virol J , vol.6 , pp. 223
    • Yutin, N.1    Wolf, Y.I.2    Raoult, D.3    Koonin, E.V.4
  • 4
    • 33645070779 scopus 로고    scopus 로고
    • Phycodnaviruses: a peek at genetic diversity
    • 10.1016/j.virusres.2006.01.024, 16516998
    • Dunigan DD, Fitzgerald LA, Van Etten JL. Phycodnaviruses: a peek at genetic diversity. Virus Res 2006, 117:119-132. 10.1016/j.virusres.2006.01.024, 16516998.
    • (2006) Virus Res , vol.117 , pp. 119-132
    • Dunigan, D.D.1    Fitzgerald, L.A.2    Van Etten, J.L.3
  • 5
    • 58249107293 scopus 로고    scopus 로고
    • The Phycodnaviridae: the story of how tiny giants rule the world
    • 10.1007/978-3-540-68618-7_1, 2908299, 19216434
    • Wilson WH, Van Etten JL, Allen MJ. The Phycodnaviridae: the story of how tiny giants rule the world. Curr Top Microbiol Immunol 2009, 328:1-42. 10.1007/978-3-540-68618-7_1, 2908299, 19216434.
    • (2009) Curr Top Microbiol Immunol , vol.328 , pp. 1-42
    • Wilson, W.H.1    Van Etten, J.L.2    Allen, M.J.3
  • 6
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • 10.1038/21119, 10376593
    • Fuhrman JA. Marine viruses and their biogeochemical and ecological effects. Nature 1999, 399:541-548. 10.1038/21119, 10376593.
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 7
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: viruses in aquatic ecosystems
    • 10.1128/MMBR.64.1.69-114.2000, 98987, 10704475
    • Wommack KE, Colwell RR. Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 2000, 64:69-114. 10.1128/MMBR.64.1.69-114.2000, 98987, 10704475.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 8
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - major players in the global ecosystem
    • 10.1038/nrmicro1750, 17853907
    • Suttle CA. Marine viruses - major players in the global ecosystem. Nat Rev Microbiol 2007, 5:801-812. 10.1038/nrmicro1750, 17853907.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 11
    • 84855586679 scopus 로고    scopus 로고
    • Chloroviruses: not your everyday plant virus
    • 10.1016/j.tplants.2011.10.005, 3259250, 22100667
    • Van Etten JL, Dunigan DD. Chloroviruses: not your everyday plant virus. Trends Plant Sci 2012, 17:1-8. 10.1016/j.tplants.2011.10.005, 3259250, 22100667.
    • (2012) Trends Plant Sci , vol.17 , pp. 1-8
    • Van Etten, J.L.1    Dunigan, D.D.2
  • 12
    • 79551496521 scopus 로고    scopus 로고
    • The systematics of Zoochlorella revisited employing an integrative approach
    • 10.1111/j.1462-2920.2010.02333.x, 20874732
    • Pröschold T, Darienko T, Silva PC, Reisser W, Krienitz L. The systematics of Zoochlorella revisited employing an integrative approach. Environ Microbiol 2011, 13:350-364. 10.1111/j.1462-2920.2010.02333.x, 20874732.
    • (2011) Environ Microbiol , vol.13 , pp. 350-364
    • Pröschold, T.1    Darienko, T.2    Silva, P.C.3    Reisser, W.4    Krienitz, L.5
  • 13
    • 0030698072 scopus 로고    scopus 로고
    • Analysis of 74 kb of DNA located at the right end of the 330-kb chlorella virus PBCV-1 genome
    • 10.1006/viro.1997.8805, 9356347
    • Li Y, Lu Z, Sun L, Ropp S, Kutish GF, Rock DL, Van Etten JL. Analysis of 74 kb of DNA located at the right end of the 330-kb chlorella virus PBCV-1 genome. Virology 1997, 237:360-377. 10.1006/viro.1997.8805, 9356347.
    • (1997) Virology , vol.237 , pp. 360-377
    • Li, Y.1    Lu, Z.2    Sun, L.3    Ropp, S.4    Kutish, G.F.5    Rock, D.L.6    Van Etten, J.L.7
  • 15
    • 33846362288 scopus 로고    scopus 로고
    • Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A
    • 10.1016/j.virol.2006.08.033, 1904511, 17027058
    • Fitzgerald LA, Graves MV, Li X, Feldblyum T, Nierman WC, Van Etten JL. Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A. Virology 2007, 358:472-484. 10.1016/j.virol.2006.08.033, 1904511, 17027058.
    • (2007) Virology , vol.358 , pp. 472-484
    • Fitzgerald, L.A.1    Graves, M.V.2    Li, X.3    Feldblyum, T.4    Nierman, W.C.5    Van Etten, J.L.6
  • 16
    • 34247554844 scopus 로고    scopus 로고
    • Sequence and annotation of the 288-kb ATCV-1 virus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea
    • 10.1016/j.virol.2006.12.028, 2018652, 17276475
    • Fitzgerald LA, Graves MV, Li X, Hartigan J, Pfitzner AJP, Hoffart E, Van Etten JL. Sequence and annotation of the 288-kb ATCV-1 virus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea. Virology 2007, 362:350-361. 10.1016/j.virol.2006.12.028, 2018652, 17276475.
    • (2007) Virology , vol.362 , pp. 350-361
    • Fitzgerald, L.A.1    Graves, M.V.2    Li, X.3    Hartigan, J.4    Pfitzner, A.J.P.5    Hoffart, E.6    Van Etten, J.L.7
  • 17
    • 33846391192 scopus 로고    scopus 로고
    • Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi
    • 10.1016/j.virol.2006.08.034, 1890046, 17023017
    • Fitzgerald LA, Graves MV, Li X, Feldblyum T, Hartigan J, Van Etten JL. Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi. Virology 2007, 358:459-471. 10.1016/j.virol.2006.08.034, 1890046, 17023017.
    • (2007) Virology , vol.358 , pp. 459-471
    • Fitzgerald, L.A.1    Graves, M.V.2    Li, X.3    Feldblyum, T.4    Hartigan, J.5    Van Etten, J.L.6
  • 18
    • 77949308237 scopus 로고
    • Chlorella viruses encode most, if not all, of the machinery to glycosylate their glycoproteins independent of the endoplasmic reticulum and Golgi
    • Van Etten JL, Gurnon JR, Yanai-Balser GM, Dunigan DD, Graves MV. Chlorella viruses encode most, if not all, of the machinery to glycosylate their glycoproteins independent of the endoplasmic reticulum and Golgi. Biochim Biophys Acta 1800, 2010:152-159.
    • (1800) Biochim Biophys Acta , vol.2010 , pp. 152-159
    • Van Etten, J.L.1    Gurnon, J.R.2    Yanai-Balser, G.M.3    Dunigan, D.D.4    Graves, M.V.5
  • 19
    • 77957960831 scopus 로고    scopus 로고
    • Initial Events Associated with Virus PBCV-1 Infection of Chlorella NC64A
    • 10.1007/978-3-642-02167-1_7, 2997699, 21152366
    • Thiel G, Moroni A, Dunigan D, Van Etten JL. Initial Events Associated with Virus PBCV-1 Infection of Chlorella NC64A. Prog Bot 2010, 71:169-183. 10.1007/978-3-642-02167-1_7, 2997699, 21152366.
    • (2010) Prog Bot , vol.71 , pp. 169-183
    • Thiel, G.1    Moroni, A.2    Dunigan, D.3    Van Etten, J.L.4
  • 20
    • 51049114011 scopus 로고    scopus 로고
    • Epigenetic transcriptional repression of cellular genes by a viral SET protein
    • 10.1038/ncb1772, 2898185, 19160493
    • Mujtaba S, Manzur KL, Gurnon JR, Kang M, Van Etten JL, Zhou M-M. Epigenetic transcriptional repression of cellular genes by a viral SET protein. Nat Cell Biol 2008, 10:1114-1122. 10.1038/ncb1772, 2898185, 19160493.
    • (2008) Nat Cell Biol , vol.10 , pp. 1114-1122
    • Mujtaba, S.1    Manzur, K.L.2    Gurnon, J.R.3    Kang, M.4    Van Etten, J.L.5    Zhou, M.-M.6
  • 21
    • 78649890507 scopus 로고    scopus 로고
    • Dimerization of a viral SET protein endows its function
    • 10.1073/pnas.1009911107, 2972924, 20937900
    • Wei H, Zhou M-M. Dimerization of a viral SET protein endows its function. Proc Natl Acad Sci U S A 2010, 107:18433-18438. 10.1073/pnas.1009911107, 2972924, 20937900.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 18433-18438
    • Wei, H.1    Zhou, M.-M.2
  • 23
    • 0346599192 scopus 로고    scopus 로고
    • Unusual life style of giant chlorella viruses
    • 10.1146/annurev.genet.37.110801.143915, 14616059
    • Van Etten JL. Unusual life style of giant chlorella viruses. Annu Rev Genet 2003, 37:153-195. 10.1146/annurev.genet.37.110801.143915, 14616059.
    • (2003) Annu Rev Genet , vol.37 , pp. 153-195
    • Van Etten, J.L.1
  • 24
    • 48249111046 scopus 로고    scopus 로고
    • Life-cycle and genome of OtV5, a large DNA virus of the pelagic marine unicellular green alga Ostreococcus tauri
    • 10.1371/journal.pone.0002250, 2386258, 18509524
    • Derelle E, Ferraz C, Escande M-L, Eychenié S, Cooke R, Piganeau G, Desdevises Y, Bellec L, Moreau H, Grimsley N. Life-cycle and genome of OtV5, a large DNA virus of the pelagic marine unicellular green alga Ostreococcus tauri. PLoS One 2008, 3:e2250. 10.1371/journal.pone.0002250, 2386258, 18509524.
    • (2008) PLoS One , vol.3
    • Derelle, E.1    Ferraz, C.2    Escande, M.-L.3    Eychenié, S.4    Cooke, R.5    Piganeau, G.6    Desdevises, Y.7    Bellec, L.8    Moreau, H.9    Grimsley, N.10
  • 25
    • 79955421841 scopus 로고    scopus 로고
    • Genome sequence of Ostreococcus tauri virus OtV-2 throws light on the role of picoeukaryote niche separation in the ocean
    • 10.1128/JVI.02131-10, 3126241, 21289127
    • Weynberg KD, Allen MJ, Gilg IC, Scanlan DJ, Wilson WH. Genome sequence of Ostreococcus tauri virus OtV-2 throws light on the role of picoeukaryote niche separation in the ocean. J Virol 2011, 85:4520-4529. 10.1128/JVI.02131-10, 3126241, 21289127.
    • (2011) J Virol , vol.85 , pp. 4520-4529
    • Weynberg, K.D.1    Allen, M.J.2    Gilg, I.C.3    Scanlan, D.J.4    Wilson, W.H.5
  • 26
    • 78649419685 scopus 로고    scopus 로고
    • Marine prasinovirus genomes show low evolutionary divergence and acquisition of protein metabolism genes by horizontal gene transfer
    • 10.1128/JVI.01123-10, 3004350, 20861243
    • Moreau H, Piganeau G, Desdevises Y, Cooke R, Derelle E, Grimsley N. Marine prasinovirus genomes show low evolutionary divergence and acquisition of protein metabolism genes by horizontal gene transfer. J Virol 2010, 84:12555-12563. 10.1128/JVI.01123-10, 3004350, 20861243.
    • (2010) J Virol , vol.84 , pp. 12555-12563
    • Moreau, H.1    Piganeau, G.2    Desdevises, Y.3    Cooke, R.4    Derelle, E.5    Grimsley, N.6
  • 27
    • 70350439602 scopus 로고    scopus 로고
    • From small hosts come big viruses: the complete genome of a second Ostreococcus tauri virus, OtV-1
    • 10.1111/j.1462-2920.2009.01991.x, 19650882
    • Weynberg KD, Allen MJ, Ashelford K, Scanlan DJ, Wilson WH. From small hosts come big viruses: the complete genome of a second Ostreococcus tauri virus, OtV-1. Environ Microbiol 2009, 11:2821-2839. 10.1111/j.1462-2920.2009.01991.x, 19650882.
    • (2009) Environ Microbiol , vol.11 , pp. 2821-2839
    • Weynberg, K.D.1    Allen, M.J.2    Ashelford, K.3    Scanlan, D.J.4    Wilson, W.H.5
  • 28
    • 0037821819 scopus 로고    scopus 로고
    • Paramecium bursaria Chlorella virus 1 encodes two enzymes involved in the biosynthesis of GDP-L-fucose and GDP-D-rhamnose
    • 10.1074/jbc.M301543200, 12679342
    • Tonetti M, Zanardi D, Gurnon JR, Fruscione F, Armirotti A, Damonte G, Sturla L, De Flora A, Van Etten JL. Paramecium bursaria Chlorella virus 1 encodes two enzymes involved in the biosynthesis of GDP-L-fucose and GDP-D-rhamnose. J Biol Chem 2003, 278:21559-21565. 10.1074/jbc.M301543200, 12679342.
    • (2003) J Biol Chem , vol.278 , pp. 21559-21565
    • Tonetti, M.1    Zanardi, D.2    Gurnon, J.R.3    Fruscione, F.4    Armirotti, A.5    Damonte, G.6    Sturla, L.7    De Flora, A.8    Van Etten, J.L.9
  • 29
    • 0028053680 scopus 로고
    • Expression and functional properties of fumarate reductase
    • 1137495, 7998964
    • Van Hellemond JJ, Tielens AG. Expression and functional properties of fumarate reductase. Biochem J 1994, 304(Pt 2):321-331. 1137495, 7998964.
    • (1994) Biochem J , vol.304 , Issue.PART 2 , pp. 321-331
    • Van Hellemond, J.J.1    Tielens, A.G.2
  • 30
    • 80054814749 scopus 로고    scopus 로고
    • Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
    • 10.1073/pnas.1110889108, 3198346, 21987820
    • Arslan D, Legendre M, Seltzer V, Abergel C, Claverie J-M. Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci U S A 2011, 108:17486-17491. 10.1073/pnas.1110889108, 3198346, 21987820.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 17486-17491
    • Arslan, D.1    Legendre, M.2    Seltzer, V.3    Abergel, C.4    Claverie, J.-M.5
  • 31
    • 1642421758 scopus 로고    scopus 로고
    • Poxvirus genomes: a phylogenetic analysis
    • 10.1099/vir.0.19565-0, 14718625
    • Gubser C, Hué S, Kellam P, Smith GL. Poxvirus genomes: a phylogenetic analysis. J Gen Virol 2004, 85:105-117. 10.1099/vir.0.19565-0, 14718625.
    • (2004) J Gen Virol , vol.85 , pp. 105-117
    • Gubser, C.1    Hué, S.2    Kellam, P.3    Smith, G.L.4
  • 32
    • 0029621845 scopus 로고
    • Large deletions in antigenic variants of the chlorella virus PBCV-1
    • 10.1006/viro.1995.0051, 8553542
    • Landstein D, Burbank DE, Nietfeldt JW, Van Etten JL. Large deletions in antigenic variants of the chlorella virus PBCV-1. Virology 1995, 214:413-420. 10.1006/viro.1995.0051, 8553542.
    • (1995) Virology , vol.214 , pp. 413-420
    • Landstein, D.1    Burbank, D.E.2    Nietfeldt, J.W.3    Van Etten, J.L.4
  • 33
    • 19744383764 scopus 로고    scopus 로고
    • Detection and characterization of horizontal transfers in prokaryotes using genomic signature
    • 10.1093/nar/gni004, 546175, 15653627
    • Dufraigne C, Fertil B, Lespinats S, Giron A, Deschavanne P. Detection and characterization of horizontal transfers in prokaryotes using genomic signature. Nucl Acids Res 2005, 33:e6. 10.1093/nar/gni004, 546175, 15653627.
    • (2005) Nucl Acids Res , vol.33
    • Dufraigne, C.1    Fertil, B.2    Lespinats, S.3    Giron, A.4    Deschavanne, P.5
  • 34
    • 0346734126 scopus 로고    scopus 로고
    • Extensive gene gain associated with adaptive evolution of poxviruses
    • 10.1073/pnas.2136653100, 307623, 14660798
    • McLysaght A, Baldi PF, Gaut BS. Extensive gene gain associated with adaptive evolution of poxviruses. PNAS 2003, 100:15655-15660. 10.1073/pnas.2136653100, 307623, 14660798.
    • (2003) PNAS , vol.100 , pp. 15655-15660
    • McLysaght, A.1    Baldi, P.F.2    Gaut, B.S.3
  • 35
    • 38349118808 scopus 로고    scopus 로고
    • Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses
    • 10.1186/1471-2164-8-456, 2211322, 18070355
    • Monier A, Claverie J-M, Ogata H. Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics 2007, 8:456. 10.1186/1471-2164-8-456, 2211322, 18070355.
    • (2007) BMC Genomics , vol.8 , pp. 456
    • Monier, A.1    Claverie, J.-M.2    Ogata, H.3
  • 36
    • 67649967512 scopus 로고    scopus 로고
    • Lateral gene transfer, lineage-specific gene expansion and the evolution of Nucleo Cytoplasmic Large DNA viruses
    • 10.1016/j.jip.2009.03.010, 19457437
    • Filée J. Lateral gene transfer, lineage-specific gene expansion and the evolution of Nucleo Cytoplasmic Large DNA viruses. J Invertebr Pathol 2009, 101:169-171. 10.1016/j.jip.2009.03.010, 19457437.
    • (2009) J Invertebr Pathol , vol.101 , pp. 169-171
    • Filée, J.1
  • 37
    • 77953702435 scopus 로고    scopus 로고
    • Giant viruses: conflicts in revisiting the virus concept
    • 10.1159/000312921, 20551688
    • Forterre P. Giant viruses: conflicts in revisiting the virus concept. Intervirology 2010, 53:362-378. 10.1159/000312921, 20551688.
    • (2010) Intervirology , vol.53 , pp. 362-378
    • Forterre, P.1
  • 39
    • 0029154909 scopus 로고
    • The Elongation Factor 3 Unique in Higher Fungi and Essential for Protein Biosynthesis Is an E Site Factor
    • 10.1074/jbc.270.35.20473, 7657623
    • Triana-Alonso FJ, Chakraburtty K, Nierhaus KH. The Elongation Factor 3 Unique in Higher Fungi and Essential for Protein Biosynthesis Is an E Site Factor. J Biol Chem 1995, 270:20473-20478. 10.1074/jbc.270.35.20473, 7657623.
    • (1995) J Biol Chem , vol.270 , pp. 20473-20478
    • Triana-Alonso, F.J.1    Chakraburtty, K.2    Nierhaus, K.H.3
  • 40
    • 0033051833 scopus 로고    scopus 로고
    • Persistent virus integration into the genome of its algal host, Ectocarpus siliculosus (Phaeophyceae)
    • Delaroque N, Maier I, Knippers R, Müller DG. Persistent virus integration into the genome of its algal host, Ectocarpus siliculosus (Phaeophyceae). J Gen Virol 1999, 80(Pt 6):1367-1370.
    • (1999) J Gen Virol , vol.80 , Issue.PART 6 , pp. 1367-1370
    • Delaroque, N.1    Maier, I.2    Knippers, R.3    Müller, D.G.4
  • 41
    • 77951954143 scopus 로고    scopus 로고
    • Composition bias and the origin of ORFan genes
    • 10.1093/bioinformatics/btq093, 2853687, 20231229
    • Yomtovian I, Teerakulkittipong N, Lee B, Moult J, Unger R. Composition bias and the origin of ORFan genes. Bioinformatics 2010, 26:996-999. 10.1093/bioinformatics/btq093, 2853687, 20231229.
    • (2010) Bioinformatics , vol.26 , pp. 996-999
    • Yomtovian, I.1    Teerakulkittipong, N.2    Lee, B.3    Moult, J.4    Unger, R.5
  • 42
    • 0141815541 scopus 로고    scopus 로고
    • Analysis of singleton ORFans in fully sequenced microbial genomes
    • 10.1002/prot.10423, 14517975
    • Siew N, Fischer D. Analysis of singleton ORFans in fully sequenced microbial genomes. Proteins 2003, 53:241-251. 10.1002/prot.10423, 14517975.
    • (2003) Proteins , vol.53 , pp. 241-251
    • Siew, N.1    Fischer, D.2
  • 43
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • 10.1093/nar/29.12.2607, 55746, 11410670
    • Besemer J, Lomsadze A, Borodovsky M. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res 2001, 29:2607-2618. 10.1093/nar/29.12.2607, 55746, 11410670.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 44
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 45
    • 77950806408 scopus 로고    scopus 로고
    • New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
    • 10.1093/sysbio/syq010, 20525638
    • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Syst Biol 2010, 59:307-321. 10.1093/sysbio/syq010, 20525638.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 46
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092, 17488738
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599. 10.1093/molbev/msm092, 17488738.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 47
    • 0027208707 scopus 로고
    • Recognition of genes in DNA sequence with ambiguities
    • 10.1016/0303-2647(93)90068-N, 8374073
    • Borodovsky M, McIninch J. Recognition of genes in DNA sequence with ambiguities. Biosystems 1993, 30:161-171. 10.1016/0303-2647(93)90068-N, 8374073.
    • (1993) Biosystems , vol.30 , pp. 161-171
    • Borodovsky, M.1    McIninch, J.2
  • 48
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally transferred genes in prokaryotic genomes
    • 10.1038/ng1381, 15208628
    • Nakamura Y, Itoh T, Matsuda H, Gojobori T. Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat Genet 2004, 36:760-766. 10.1038/ng1381, 15208628.
    • (2004) Nat Genet , vol.36 , pp. 760-766
    • Nakamura, Y.1    Itoh, T.2    Matsuda, H.3    Gojobori, T.4


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