Lateral gene transfer, lineage-specific gene expansion and the evolution of Nucleo Cytoplasmic Large DNA viruses

Journal of Invertebrate Pathology

Volumn 101, Issue 3, 2009, Pages 169-171

  Filée, Jonathan ^a  

^a CNRS   (France)

Author keywords

Genome evolution; Lateral gene transfer; Nucleo Cytoplasmic Large DNA viruses (NCLDVs)

Indexed keywords

ARTICLE; CYTOPLASM; DNA VIRUS; GENETICS; HORIZONTAL GENE TRANSFER; MOLECULAR EVOLUTION; VIROLOGY; VIRUS GENE; VIRUS GENOME;

CYTOPLASM; DNA VIRUSES; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GENES, VIRAL; GENOME, VIRAL;

DNA VIRUSES; EUKARYOTA; HEXAPODA; PROTISTA; VERTEBRATA;

EID: 67649967512     PISSN: 00222011     EISSN: 10960805     Source Type: Journal    
DOI: 10.1016/j.jip.2009.03.010     Document Type: Article

References (22)

1. Benson S.D., Bamford J.K., Bamford D.H., and Burnett R.M. Does common architecture reveal a viral lineage spanning all three domains of life?. Mol. Cell. 16 (2004) 673-685
2. Chen F., Suttle C.A., and Short S.M. Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes. Appl. Environ. Microbiol. 62 (1996) 2869-2874
3. Esposito J.J., Sammons S.A., Frace A.M., Osborne J.D., Olsen-Rasmussen M., Zhang M., Govil D., Damon I.K., Kline R., Laker M., Li Y., Smith G.L., Meyer H., Leduc J.W., and Wohlhueter R.M. Genome sequence diversity and clues to the evolution of variola (smallpox) virus. Science 313 (2006) 807-812
4. Filee J., and Chandler M. Convergent mechanisms of genome evolution of large and giant DNA viruses. Res. Microbiol. 159 (2008) 325-331
5. Filee J., Pouget N., and Chandler M. Phylogenetic evidence for extensive lateral acquisition of cellular genes by Nucleocytoplasmic large DNA viruses. BMC Evol. Biol. 8 (2008) 320
6. Filee J., Siguier P., and Chandler M. I am what I eat and I eat what I am: acquisition of bacterial genes by giant viruses. Trends Genet. 23 (2007) 10-15
7. Fitzgerald L.A., Graves M.V., Li X., Feldblyum T., Nierman W.C., and Van Etten J.L. Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A. Virology 358 (2007) 472-484
8. Fuhrman J.A. Marine viruses and their biogeochemical and ecological effects. Nature 399 (1999) 541-548
9. Hendrix R.W., Lawrence J.G., Hatfull G.F., and Casjens S. The origins and ongoing evolution of viruses. Trends Microbiol. 8 (2000) 504-508
10. Hendrix R.W., Smith M.C., Burns R.N., Ford M.E., and Hatfull G.F. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. USA 96 (1999) 2192-2197
11. Iyer L.M., Balaji S., Koonin E.V., and Aravind L. Evolutionary genomics of Nucleo-Cytoplasmic Large DNA viruses. Virus Res. 117 (2006) 156-184
12. Jordan I.K., Makarova K.S., Spouge J.L., Wolf Y.I., and Koonin E.V. Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Res. 11 (2001) 555-565
13. Koonin E.V., Senkevich T.G., and Dolja V.V. The ancient Virus World and evolution of cells. Biol. Direct. 1 (2006) 29
14. Larsen J.B., Larsen A., Bratbak G., and Sandaa R.A. Phylogenetic analysis of members of the Phycodnaviridae virus family, using amplified fragments of the major capsid protein gene. Appl. Environ. Microbiol. 74 (2008) 3048-3057
15. Lespinet O., Wolf Y.I., Koonin E.V., and Aravind L. The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res. 12 (2002) 1048-1059
16. Monier A., Claverie J.M., and Ogata H. Taxonomic distribution of large DNA viruses in the sea. Genome Biol. 9 (2008) R106
17. Moreira D., and Brochier-Armanet C. Giant viruses, giant chimeras: the multiple evolutionary histories of Mimivirus genes. BMC Evol. Biol. 8 (2008) 12
18. Moreira, D., Lopez-Garcia, P., 2005. Comment on "The 1.2-megabase genome sequence of Mimivirus". Science. 308, 1114; author reply 1114.
19. Raoult D., Audic S., Robert C., Abergel C., Renesto P., Ogata H., La Scola B., Suzan M., and Claverie J.M. The 1.2-megabase genome sequence of Mimivirus. Science 306 (2004) 1344-1350
20. Suhre K. Gene and genome duplication in Acanthamoeba polyphaga Mimivirus. J. Virol. 79 (2005) 14095-14101
21. Suttle C.A. Viruses in the sea. Nature 437 (2005) 356-361
22. Van Etten J.L. Unusual life style of giant chlorella viruses. Annu. Rev. Genet. 37 (2003) 153-195