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Volumn 358, Issue 2, 2007, Pages 472-484

Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A

Author keywords

Chlorella viruses; Genome sequence; Phycodnaviridae; Virus AR158; Virus NY 2A

Indexed keywords

ADENOSINE TRIPHOSPHATASE (CALCIUM); ASPARTATE CARBAMOYLTRANSFERASE; FUCOSE; GENE PRODUCT; GUANOSINE DIPHOSPHATE MANNOSE; HELICASE; HYDROLYASE; INTEIN; RIBONUCLEOTIDE REDUCTASE; SPACER DNA; SYNTHETASE; UBIQUITIN;

EID: 33846362288     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2006.08.033     Document Type: Article
Times cited : (70)

References (70)
  • 1
    • 27444435744 scopus 로고    scopus 로고
    • Genetic rearrangements on the chlorovirus genome that switch between hyaluronan synthesis and chitin synthesis
    • Ali M.M.A., Kawasaki T., and Yamada T. Genetic rearrangements on the chlorovirus genome that switch between hyaluronan synthesis and chitin synthesis. Virology 342 (2005) 102-110
    • (2005) Virology , vol.342 , pp. 102-110
    • Ali, M.M.A.1    Kawasaki, T.2    Yamada, T.3
  • 3
    • 0942298130 scopus 로고    scopus 로고
    • Protein splicing of inteins with atypical glutamine and aspartate C-terminal residues
    • Amitai G., Dassa B., and Pietrokovski S. Protein splicing of inteins with atypical glutamine and aspartate C-terminal residues. J. Biol. Chem. 279 (2004) 3121-3131
    • (2004) J. Biol. Chem. , vol.279 , pp. 3121-3131
    • Amitai, G.1    Dassa, B.2    Pietrokovski, S.3
  • 4
    • 33846551940 scopus 로고    scopus 로고
    • Baumann, S., Sander, A., Gurnon, J.R., Yanai-Balser, G., Van Etten, J.L., Piotrowski, M., submitted for publication. Chlorella viruses encode a complete polyamine biosynthesis pathway. Virology.
  • 5
    • 0027182421 scopus 로고
    • Translation elongation factor 3: a fungus-specific translation factor?
    • Belfield G.P., and Tuite M.F. Translation elongation factor 3: a fungus-specific translation factor?. Mol. Microbiol. 9 (1993) 411-418
    • (1993) Mol. Microbiol. , vol.9 , pp. 411-418
    • Belfield, G.P.1    Tuite, M.F.2
  • 6
    • 0030812487 scopus 로고    scopus 로고
    • Homing endonucleases: keeping the house in order
    • Belfort M., and Roberts R.J. Homing endonucleases: keeping the house in order. Nucleic Acids Res. 25 (1997) 3379-3388
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3379-3388
    • Belfort, M.1    Roberts, R.J.2
  • 7
    • 26244460738 scopus 로고    scopus 로고
    • Isolation and characterization of a new type of chlorovirus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea
    • Bubeck J.A., and Pfitzner A.J.P. Isolation and characterization of a new type of chlorovirus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea. J. Gen. Virol. 86 (2005) 2871-2877
    • (2005) J. Gen. Virol. , vol.86 , pp. 2871-2877
    • Bubeck, J.A.1    Pfitzner, A.J.P.2
  • 8
    • 0035010486 scopus 로고    scopus 로고
    • Translational regulation by ABC systems
    • Chakraburtty K. Translational regulation by ABC systems. Res. Microbiol. 152 (2001) 391-399
    • (2001) Res. Microbiol. , vol.152 , pp. 391-399
    • Chakraburtty, K.1
  • 9
    • 13444305311 scopus 로고    scopus 로고
    • Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification
    • Chan S.-H., Zhu Z., Van Etten J.L., and Xu S.-Y. Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification. Nucleic Acids Res. 32 (2004) 6187-6199
    • (2004) Nucleic Acids Res. , vol.32 , pp. 6187-6199
    • Chan, S.-H.1    Zhu, Z.2    Van Etten, J.L.3    Xu, S.-Y.4
  • 10
    • 33746830910 scopus 로고    scopus 로고
    • Chan, S.H., Zhu, Z., Dunigan, D.D., Van Etten, J.L., Xu, S.Y., 2006. Cloning of Nt.CviQII nicking endonuclease and its cognate methyltransferase: M.CviQII methylates AG sequences. Protein Expression Purif. 48, 138-150.
  • 11
    • 0026695481 scopus 로고
    • Sequestered end products and enzyme regulation: the case of ornithine decarboxylase
    • Davis R.H., Morris D.R., and Coffino P. Sequestered end products and enzyme regulation: the case of ornithine decarboxylase. Microbiol. Rev. 56 (1992) 280-290
    • (1992) Microbiol. Rev. , vol.56 , pp. 280-290
    • Davis, R.H.1    Morris, D.R.2    Coffino, P.3
  • 12
  • 14
    • 33846391192 scopus 로고    scopus 로고
    • Fitzgerald, L.A., Graves, M.V., Li, X., Feldblyum, T., Hartigan, J., Van Etten, J.L., this issue. The sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi. Virology 358, 459-471.
  • 17
    • 0035369742 scopus 로고    scopus 로고
    • RNA editing by base deamination: more enzymes, more targets, new mysteries
    • Gerber A.P., and Keller W. RNA editing by base deamination: more enzymes, more targets, new mysteries. Trends Biochem. Sci. 26 (2001) 376-384
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 376-384
    • Gerber, A.P.1    Keller, W.2
  • 18
    • 0026658938 scopus 로고
    • The DNA polymerase gene from chlorella viruses PBCV-1 and NY-2A contains an intron with nuclear splicing sequences
    • Grabherr R., Strasser P., and Van Etten J.L. The DNA polymerase gene from chlorella viruses PBCV-1 and NY-2A contains an intron with nuclear splicing sequences. Virology 188 (1992) 721-731
    • (1992) Virology , vol.188 , pp. 721-731
    • Grabherr, R.1    Strasser, P.2    Van Etten, J.L.3
  • 19
    • 0035811885 scopus 로고    scopus 로고
    • Molecular and genetic evidence for a virus-encoded glycosyltransferase involved in protein glycosylation
    • Graves M.V., Bernadt C.T., Cerny R., and Van Etten J.L. Molecular and genetic evidence for a virus-encoded glycosyltransferase involved in protein glycosylation. Virology 285 (2001) 332-345
    • (2001) Virology , vol.285 , pp. 332-345
    • Graves, M.V.1    Bernadt, C.T.2    Cerny, R.3    Van Etten, J.L.4
  • 21
    • 0035167322 scopus 로고    scopus 로고
    • Common origin of four diverse families of large eukaryotic DNA viruses
    • Iyer L.M., Aravind L., and Koonin E.V. Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 75 (2001) 11720-11734
    • (2001) J. Virol. , vol.75 , pp. 11720-11734
    • Iyer, L.M.1    Aravind, L.2    Koonin, E.V.3
  • 22
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • Iyer L.M., Balaji S., Koonin E.V., and Aravind L. Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res. 117 (2006) 156-184
    • (2006) Virus Res. , vol.117 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 23
    • 0036774644 scopus 로고    scopus 로고
    • Modification of glycopeptidolipids by an O-methyltransferase of Mycobacterium smegmatis
    • Jeevarajah D., Patterson J.H., McConville M.J., and Billman-Jacobe H. Modification of glycopeptidolipids by an O-methyltransferase of Mycobacterium smegmatis. Microbiology 148 (2002) 3079-3087
    • (2002) Microbiology , vol.148 , pp. 3079-3087
    • Jeevarajah, D.1    Patterson, J.H.2    McConville, M.J.3    Billman-Jacobe, H.4
  • 26
    • 84985091471 scopus 로고
    • Behavior of a virus in a symbiotic system, Paramecium bursaria-zoochlorella
    • Kawakami H., and Kawakami N. Behavior of a virus in a symbiotic system, Paramecium bursaria-zoochlorella. J. Protozool. 25 (1978) 217-225
    • (1978) J. Protozool. , vol.25 , pp. 217-225
    • Kawakami, H.1    Kawakami, N.2
  • 27
    • 0036432912 scopus 로고    scopus 로고
    • Chitin synthesis in chlorovirus CVK2-infected chlorella cells
    • Kawasaki T., Tanaka M., Fujie M., Usami S., Sakai K., and Yamada T. Chitin synthesis in chlorovirus CVK2-infected chlorella cells. Virology 302 (2002) 123-131
    • (2002) Virology , vol.302 , pp. 123-131
    • Kawasaki, T.1    Tanaka, M.2    Fujie, M.3    Usami, S.4    Sakai, K.5    Yamada, T.6
  • 28
    • 0037180557 scopus 로고    scopus 로고
    • SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin
    • Kim Y., and Clark D.J. SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 15381-15386
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 15381-15386
    • Kim, Y.1    Clark, D.J.2
  • 29
    • 0030199198 scopus 로고    scopus 로고
    • An early gene of the chlorella virus PBCV-1 encodes a functional aspartate transcarbamylase
    • Landstein D., Mincberg M., Arad S., and Tal J. An early gene of the chlorella virus PBCV-1 encodes a functional aspartate transcarbamylase. Virology 221 (1996) 151-158
    • (1996) Virology , vol.221 , pp. 151-158
    • Landstein, D.1    Mincberg, M.2    Arad, S.3    Tal, J.4
  • 31
    • 0028803831 scopus 로고
    • Analysis of 43 kb of the chlorella virus PBCV-1 330 kb genome: map position 45 to 88
    • Li Y., Lu Z., Burbank D.E., Kutish G.F., Rock D.L., and Van Etten J.L. Analysis of 43 kb of the chlorella virus PBCV-1 330 kb genome: map position 45 to 88. Virology 212 (1995) 134-150
    • (1995) Virology , vol.212 , pp. 134-150
    • Li, Y.1    Lu, Z.2    Burbank, D.E.3    Kutish, G.F.4    Rock, D.L.5    Van Etten, J.L.6
  • 32
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 34
    • 0019518916 scopus 로고
    • Viral infection of the symbiotic chlorella-like alga present in Hydra viridis
    • Meints R.H., Van Etten J.L., Kuczmarski D., Lee K., and Ang B. Viral infection of the symbiotic chlorella-like alga present in Hydra viridis. Virology 113 (1981) 698-703
    • (1981) Virology , vol.113 , pp. 698-703
    • Meints, R.H.1    Van Etten, J.L.2    Kuczmarski, D.3    Lee, K.4    Ang, B.5
  • 38
    • 0032520580 scopus 로고    scopus 로고
    • Group I introns found in chlorella viruses: biological implications
    • Nishida K., Suzuki S., Kimura Y., Nomura N., Fujie M., and Yamada T. Group I introns found in chlorella viruses: biological implications. Virology 242 (1998) 319-326
    • (1998) Virology , vol.242 , pp. 319-326
    • Nishida, K.1    Suzuki, S.2    Kimura, Y.3    Nomura, N.4    Fujie, M.5    Yamada, T.6
  • 39
    • 0033543952 scopus 로고    scopus 로고
    • Aminoacylation of tRNAs encoded by chlorella virus CVK2
    • Nishida K., Kawasaki T., Fujie M., Usami S., and Yamada T. Aminoacylation of tRNAs encoded by chlorella virus CVK2. Virology 263 (1999) 220-229
    • (1999) Virology , vol.263 , pp. 220-229
    • Nishida, K.1    Kawasaki, T.2    Fujie, M.3    Usami, S.4    Yamada, T.5
  • 41
    • 0036084146 scopus 로고    scopus 로고
    • InBase: the intein database
    • Perler F.B. InBase: the intein database. Nucleic Acids Res. 30 (2002) 383-384
    • (2002) Nucleic Acids Res. , vol.30 , pp. 383-384
    • Perler, F.B.1
  • 42
    • 0032505062 scopus 로고    scopus 로고
    • Identification of a virus intein and a possible variation in the protein-splicing reaction
    • Pietrokovski S. Identification of a virus intein and a possible variation in the protein-splicing reaction. Curr. Biol. 8 (1998) R634-R635
    • (1998) Curr. Biol. , vol.8
    • Pietrokovski, S.1
  • 45
    • 0028949206 scopus 로고
    • The mechanisms of DNA topoisomerases
    • Roca J. The mechanisms of DNA topoisomerases. Trends Biochem. Sci. 20 (1995) 156-160
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 156-160
    • Roca, J.1
  • 46
    • 4143113737 scopus 로고    scopus 로고
    • Paramecium bursaria chlorella virus-1 encodes an unusual arginine decarboxylase that is a close homolog of eukaryotic ornithine decarboxylases
    • Shah R., Coleman C.S., Mir K., Baldwin J., Van Etten J.L., Grishin N.V., Pegg A.E., Stanley B.A., and Phillips M.A. Paramecium bursaria chlorella virus-1 encodes an unusual arginine decarboxylase that is a close homolog of eukaryotic ornithine decarboxylases. J. Biol. Chem. 279 (2004) 35760-35767
    • (2004) J. Biol. Chem. , vol.279 , pp. 35760-35767
    • Shah, R.1    Coleman, C.S.2    Mir, K.3    Baldwin, J.4    Van Etten, J.L.5    Grishin, N.V.6    Pegg, A.E.7    Stanley, B.A.8    Phillips, M.A.9
  • 47
    • 0442307835 scopus 로고    scopus 로고
    • vAL-1, a novel polysaccharide lyase encoded by chlorovirus CVK2
    • Sugimoto I., Onimatsu H., Fujie M., Usami S., and Yamada T. vAL-1, a novel polysaccharide lyase encoded by chlorovirus CVK2. FEBS Lett. 559 (2004) 51-56
    • (2004) FEBS Lett. , vol.559 , pp. 51-56
    • Sugimoto, I.1    Onimatsu, H.2    Fujie, M.3    Usami, S.4    Yamada, T.5
  • 50
    • 0010876466 scopus 로고
    • Polyamines and the growth of pathogenic viruses
    • Goldenberg S.H., and Algranti J.D. (Eds), IRL Press, Oxford
    • Tyms A.S., Clarke J.R., Ford L., and Eloranta T. Polyamines and the growth of pathogenic viruses. In: Goldenberg S.H., and Algranti J.D. (Eds). The Biology and Chemistry of Polyamines (1990), IRL Press, Oxford 121-133
    • (1990) The Biology and Chemistry of Polyamines , pp. 121-133
    • Tyms, A.S.1    Clarke, J.R.2    Ford, L.3    Eloranta, T.4
  • 51
    • 0346599192 scopus 로고    scopus 로고
    • Unusual life style of giant chlorella viruses
    • Van Etten J.L. Unusual life style of giant chlorella viruses. Annu. Rev. Genet. 37 (2003) 153-195
    • (2003) Annu. Rev. Genet. , vol.37 , pp. 153-195
    • Van Etten, J.L.1
  • 52
    • 0019456775 scopus 로고
    • Isolation and characterization of a virus from the intracellular green alga symbiotic with Hydra viridis
    • Van Etten J.L., Meints R.H., Burbank D.E., Kuczmarski D., Cuppels D.A., and Lane L.C. Isolation and characterization of a virus from the intracellular green alga symbiotic with Hydra viridis. Virology 113 (1981) 704-711
    • (1981) Virology , vol.113 , pp. 704-711
    • Van Etten, J.L.1    Meints, R.H.2    Burbank, D.E.3    Kuczmarski, D.4    Cuppels, D.A.5    Lane, L.C.6
  • 54
    • 0020615927 scopus 로고
    • Growth cycle of a virus, PBCV-1, that infects chlorella-like algae
    • Van Etten J.L., Burbank D.E., Xia Y., and Meints R.H. Growth cycle of a virus, PBCV-1, that infects chlorella-like algae. Virology 126 (1983) 117-125
    • (1983) Virology , vol.126 , pp. 117-125
    • Van Etten, J.L.1    Burbank, D.E.2    Xia, Y.3    Meints, R.H.4
  • 55
    • 0021262414 scopus 로고
    • DNA synthesis in a chlorella-like alga following infection with the virus PBCV-1
    • Van Etten J.L., Burbank D.E., Joshi J., and Meints R.H. DNA synthesis in a chlorella-like alga following infection with the virus PBCV-1. Virology 134 (1984) 443-449
    • (1984) Virology , vol.134 , pp. 443-449
    • Van Etten, J.L.1    Burbank, D.E.2    Joshi, J.3    Meints, R.H.4
  • 57
    • 0025833760 scopus 로고
    • Viruses and viruslike particles of eukaryotic algae
    • Van Etten J.L., Lane L.C., and Meints R.H. Viruses and viruslike particles of eukaryotic algae. Microbiol. Rev. 55 (1991) 586-620
    • (1991) Microbiol. Rev. , vol.55 , pp. 586-620
    • Van Etten, J.L.1    Lane, L.C.2    Meints, R.H.3
  • 58
    • 33846498078 scopus 로고    scopus 로고
    • The dilemma of the big transition in evolution: the eukaryotes
    • ASM Press, Washington, DC
    • Villarreal L.P. The dilemma of the big transition in evolution: the eukaryotes. Viruses and the Evolution of Life (2005), ASM Press, Washington, DC 101-141
    • (2005) Viruses and the Evolution of Life , pp. 101-141
    • Villarreal, L.P.1
  • 59
    • 0033912561 scopus 로고    scopus 로고
    • A hypothesis for DNA viruses as the origin of eukaryotic replication proteins
    • Villarreal L.P., and DeFilippis V.R. A hypothesis for DNA viruses as the origin of eukaryotic replication proteins. J. Virol. 74 (2000) 7079-7084
    • (2000) J. Virol. , vol.74 , pp. 7079-7084
    • Villarreal, L.P.1    DeFilippis, V.R.2
  • 61
    • 0033777562 scopus 로고    scopus 로고
    • The puzzle of PCNA's many partners
    • Warbrick E. The puzzle of PCNA's many partners. BioEssays 22 (2000) 997-1006
    • (2000) BioEssays , vol.22 , pp. 997-1006
    • Warbrick, E.1
  • 63
    • 0036606136 scopus 로고    scopus 로고
    • A novel family of mobile genetic elements is limited to the germline genome in Tetrahymena thermophila
    • Wuitschick J.D., Gershan J.A., Lochowicz A.J., Li S., and Karrer K.M. A novel family of mobile genetic elements is limited to the germline genome in Tetrahymena thermophila. Nucleic Acids Res. 30 (2002) 2524-2537
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2524-2537
    • Wuitschick, J.D.1    Gershan, J.A.2    Lochowicz, A.J.3    Li, S.4    Karrer, K.M.5
  • 64
    • 0010531478 scopus 로고
    • The cleavage site of the RsaI isoschizomer, CviII, is G/TAC
    • Xia Y., Narva K.E., and Van Etten J.L. The cleavage site of the RsaI isoschizomer, CviII, is G/TAC. Nucleic Acids Res. 15 (1987) 10063
    • (1987) Nucleic Acids Res. , vol.15 , pp. 10063
    • Xia, Y.1    Narva, K.E.2    Van Etten, J.L.3
  • 65
    • 0024297192 scopus 로고
    • A site-specific single strand endonuclease activity induced by NYs-1 virus infection of a chlorella-like green alga
    • Xia Y., Morgan R., Schildkraut I., and Van Etten J.L. A site-specific single strand endonuclease activity induced by NYs-1 virus infection of a chlorella-like green alga. Nucleic Acids Res. 16 (1988) 9477-9487
    • (1988) Nucleic Acids Res. , vol.16 , pp. 9477-9487
    • Xia, Y.1    Morgan, R.2    Schildkraut, I.3    Van Etten, J.L.4
  • 66
    • 0027373539 scopus 로고
    • Expression of the gene encoding a translational elongation factor 3 homolog of chlorella virus CVK2
    • Yamada T., Fukuda T., Tamura K., Furukawa S., and Songsri P. Expression of the gene encoding a translational elongation factor 3 homolog of chlorella virus CVK2. Virology 197 (1993) 742-750
    • (1993) Virology , vol.197 , pp. 742-750
    • Yamada, T.1    Fukuda, T.2    Tamura, K.3    Furukawa, S.4    Songsri, P.5
  • 67
    • 0028303483 scopus 로고
    • Self-splicing group I introns in eukaryotic viruses
    • Yamada T., Tamura K., Aimi T., and Songsri P. Self-splicing group I introns in eukaryotic viruses. Nucleic Acids Res. 22 (1994) 2532-2537
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2532-2537
    • Yamada, T.1    Tamura, K.2    Aimi, T.3    Songsri, P.4
  • 68
    • 33746313502 scopus 로고    scopus 로고
    • Chlorella viruses
    • Maramorosch K., and Shatkin A. (Eds), Elsevier Inc.
    • Yamada T., Onimatsu H., and Van Etten J.L. Chlorella viruses. In: Maramorosch K., and Shatkin A. (Eds). Advances in Virus Research vol. 66 (2006), Elsevier Inc. 293-336
    • (2006) Advances in Virus Research , vol.66 , pp. 293-336
    • Yamada, T.1    Onimatsu, H.2    Van Etten, J.L.3
  • 69
    • 0032518484 scopus 로고    scopus 로고
    • Chlorella virus NY-2A encodes at least 12 DNA endonuclease/methyltransferase genes
    • Zhang Y., Nelson M., Nietfeldt J., Xia Y., Burbank D., Ropp S., and Van Etten J.L. Chlorella virus NY-2A encodes at least 12 DNA endonuclease/methyltransferase genes. Virology 240 (1998) 366-375
    • (1998) Virology , vol.240 , pp. 366-375
    • Zhang, Y.1    Nelson, M.2    Nietfeldt, J.3    Xia, Y.4    Burbank, D.5    Ropp, S.6    Van Etten, J.L.7
  • 70
    • 0035811899 scopus 로고    scopus 로고
    • Intron conservation in the DNA polymerase gene encoded by chlorella viruses
    • Zhang Y., Adams B., Sun L., Burbank D.E., and Van Etten J.L. Intron conservation in the DNA polymerase gene encoded by chlorella viruses. Virology 285 (2001) 313-321
    • (2001) Virology , vol.285 , pp. 313-321
    • Zhang, Y.1    Adams, B.2    Sun, L.3    Burbank, D.E.4    Van Etten, J.L.5


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