Genetic diversity of porcine sapoviruses, kobuviruses, and astroviruses in asymptomatic pigs: An emerging new sapovirus GIII genotype

Archives of Virology

Volumn 158, Issue 3, 2013, Pages 549-558

  Dufkova, Lucie ^a   Scigalkova, Ivana ^b   Moutelikova, Romana ^a   Malenovska, Hana ^a   Prodelalova, Jana ^a  

^a VETERINARY RESEARCH INSTITUTE   (Czech Republic)

^b MASARYK UNIVERSITY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; ASTROVIRIDAE; KOBUVIRUS; MAMASTROVIRUS; MIRIDAE; RNA VIRUSES; SAPOVIRUS; SUIDAE; SUS;

EID: 84874667599     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1528-z     Document Type: Article

References (43)

1. Attoui H, Mertens PPC, Becnel J, Belaganahalli S, Bergoin M, Brussaard CP, Chappell JD, Ciarlet M, del Vas M, Dermody TS, Dormitzer PR, Duncan R, Fang Q, Graham R, Guglielmi KM, Harding RM, Hillman B, Makkay A, Marzachi C, Matthijnssens J, Milne RG, Mohd Jaafar F, Mori H, Noordeloos AA, Omura T, Patton JT, Rao S, Maan M, Stoltz D, Suzuki N, Upadhyaya NM, Wei C, Zhou H (2011) Reoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: Classification and nomenclature of viruses: Ninth report of the international committee on taxonomy of viruses, Elsevier San Diego, 541-637.
2. Barry AF, Alfieri AF, Alfieri AA (2008) High genetic diversity in RdRp gene of Brazilian porcine sapovirus strains. Vet Microbiol 131: 185-191.
3. Barry AF, Ribeiro J, Alfieri AF, van der Poel WHM, Alfieri AA (2011) First detection of kobuvirus in farm animals in Brazil and the Netherlands. Infect Genet Evol 11: 1811-1814.
4. Bosh A, Guix S, Krishna NK, Méndez E, Monroe SS, Pantin-Jackwood M, Schulz-Cherry S (2011) Astroviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: Classification and nomenclature of viruses: Ninth report of the international committee on taxonomy of viruses, Elsevier San Diego, 953-959.
5. Clarke IN, Estes MK, Green KY, Hansman GS, Knowles NJ, Koopmans MK, Matson DO, Meyers G, Neill JD, Radford A, Smith AW, Studdert MJ, Thiel HJ, Vinjé J (2011) Caliciviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: Classification and nomenclature of viruses: Ninth report of the international committee on taxonomy of viruses, Elsevier San Diego, 977-986.
6. De Benedictis P, Schultz-Cherry S, Burnham A, Cattoli G (2011) Astrovirus infections in humans and animals-molecular biology, genetic diversity, and interspecies transmissions. Infect Genet Evol 11: 1529-1544.
7. Dufkova L, Kulich P, Prodelalova J (2011) Molecular characterization of a porcine sapovirus strain isolated from a piglet with diarrhea: a case report. Vet Med 56: 409-415.
8. Duizer E, Bijkerk P, Rockx B, De Groot A, Twisk F, Koopmans M (2004) Inactivation of caliciviruses. Appl Environ Microbiol 70: 4538-4543.
9. Gabbay YB, Borges AA, Oliveira DS, Linhares AC, Mascarenhas JD, Barardi CR, Simões CM, Wang Y, Glass RI, Jiang B (2008) Evidence for zoonotic transmission of group C rotaviruses among children in Belém, Brazil. J Med Virol 80: 1666-1674.
10. Ghosh S, Urushibara N, Taniguchi K, Kobayashi N (2012) Whole genomic analysis reveals the porcine origin of human G9P[19] rotavirus strains Mc323 and Mc345. Infect Genet Evol 12: 471-477.
11. Greig JD, Lee MB (2009) Enteric outbreaks in long-term care facilities and recommendations for prevention: a review. Epidemiol Infect 137: 145-155.
12. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
13. Chu DK, Poon LL, Guan Y, Peiris JS (2008) Novel astrovirus in insectivorous bats. J Virol 82: 9107-9114.
14. Indik S, Valícek L, Smíd B, Dvoráková H, Rodák L (2006) Isolation and partial characterization of a novel porcine astrovirus. Vet Microbiol 117: 276-283.
15. Jeong Ch, Park SI, Park SH, Kim HH, Park SJ, Jeong JH, Choy HE, Saif LJ, Kim SK, Kang MI, Hyun BH, Cho KO (2007) Genetic diversity of porcine sapoviruses. Vet Microbiol 122: 246-257.
16. Kapoor A, Li L, Victoria J, Oderinde B, Mason C, Pandey P, Zaidi SZ, Delwart E (2009) Multiple novel astrovirus species in human stool. J Gen Virol 90: 2965-2972.
17. Keum HO, Moon HJ, Park SJ, Kim HK, Rho SM, Park BK (2009) Porcine noroviruses and sapoviruses on Korean swine farms. Arch Virol 154: 1765-1774.
18. Khamrin P, Maneekarn N, Hidaka S, Kishikawa S, Ushijima K, Okitsu S, Ushijima H (2010) Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infect Genet Evol 10: 950-954.
19. Kim HJ, Cho HS, Cho KO, Park NY (2006) Detection and molecular characterization of porcine enteric calicivirus in Korea, genetically related to sapoviruses. J Vet Med B 53: 155-159.
20. Knowles NJ, Hovi T, Hyypiä T, King AMQ, Lindberg M, Pallansch MA, Palmenberg AC, Simmonds P, Skern T, Stanway G, Yamashita T, Zell R (2011) Picornaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: Classification and nomenclature of viruses: Ninth report of the international committee on taxonomy of viruses, Elsevier San Diego, 855-880.
21. Lan D, Ji W, Shan T, Cui L, Yang Z, Yuan C, Hua X (2011) Molecular characterization of a porcine astrovirus strain in China. Arch Virol 156: 1869-1875.
22. Laurin MA, Dastor M, L'homme Y (2011) Detection and genetic characterization of a novel pig astrovirus: relationship to other astroviruses. Arch Virol 156: 2095-2099.
23. Luo Z, Roi S, Dastor M, Gallice E, Laurin MA, L'homme Y (2011) Multiple novel and prevalent astroviruses in pigs. Vet Microbiol 149: 316-323.
24. Martella V, Lorusso E, Banyai K, Decaro N, Corrente M, Elia G, Cavalli A, Radogna A, Costantini V, Saif LJ, Lavazza A, Di Trani L, Buonavoglia C (2008) Identification of a porcine calicivirus related genetically to human sapoviruses. J Clin Microbiol 46: 1907-1913.
25. Martella V, Bányai K, Lorusso E, Bellacicco AL, Decaro N, Mari V, Saif L, Costantini V, De Grazia S, Pezzotti G, Lavazza A, Buonavoglia C (2008) Genetic heterogeneity of porcine enteric caliciviruses identified from diarrhoeic piglets. Virus Genes 36: 365-373.
26. Martínez MA, Alcala AC, Carruyo G, Botero L, Liprandi F, Ludert JE (2006) Molecular detection of porcine enteric caliciviruses in Venezuelan farms. Vet Microbiol 116: 77-84.
27. Park SJ, Kim HK, Moon HJ, Song DS, Rho SM, Han JY, Nguyen VG, Park BK (2010) Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch Virol 155: 1803-1811.
28. Reuter G, Bíró H, Szucs G (2007) Enteric caliciviruses in domestic pigs in Hungary. Arch Virol 152: 611-614.
29. Reuter G, Boldiszár Á, Kiss I, Pankovics P (2008) Candidate new species of kobuvirus in porcine hosts. Emerg Infect Dis 14: 1968-1970.
30. Reuter G, Boros Á, Pankovics P, Egyed L (2010) Kobuvirus in domestic sheep, Hungary. Emerg Infect Dis 16: 869-870.
31. Reuter G, Kecskeméti S, Pankovics P (2010) Evolution of porcine kobuvirus infection, Hungary. Emerg Infect Dis 16: 696-698.
32. Reuter G, Zimsek-Mijovski J, Poljsak-Prijatelj M, Di Bartolo I, Ruggeri FM, Kantala T, Maunula L, Kiss I, Kecskeméti S, Halaihel N, Buesa J, Johnsen C, Hjulsager CK, Larsen LE, Koopmans M, Böttiger B (2010) Incidence, diversity, and molecular epidemiology of sapoviruses in swine across Europe. J Clin Microbiol 48: 363-368.
33. Reuter G, Boros A, Pankovics P (2011) Kobuviruses-a comprehensive review. Rev Med Virol 21: 32-41.
34. Reuter G, Pankovics P, Boros Á (2011) Identification of a novel astrovirus in a domestic pig in Hungary. Arch Virol 156: 125-128.
35. Smits SL, van Leeuwen M, Kuiken T, Hammer AS, Simon JH, Osterhaus AD (2010) Identification and characterization of deer astroviruses. J Gen Virol 91: 2719-2722.
36. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
37. Wang QH, Han MG, Funk JA, Bowman G, Janies DA, Saif LJ (2005) Genetic diversity and recombination of porcine sapoviruses. J Clin Microbiol 43: 5963-5972.
38. Wang QH, Souza M, Funk JA, Zhang W, Saif LJ (2006) Prevalence of noroviruses and sapoviruses in swine of various ages determined by reverse transcription-PCR and microwell hybridization assays. J Clin Microbiol 44: 2057-2062.
39. Wang QH, Costantini V, Saif LJ (2007) Porcine enteric caliciviruses: genetic and antigenic relatedness to human caliciviruses, diagnosis and epidemiology. Vaccine 25: 5453-5466.
40. Wilhelmi I, Roman E, Sánchez-Fauquier A (2003) Viruses causing gastroenteritis. Clin Microbiol Infect 9: 247-262.
41. Willcocks MM, Brown TD, Madeley CR, Carter MJ (1994) The complete sequence of a human astrovirus. J Gen Virol 75: 1785-1788.
42. Yu J, Jin M, Zhang Q, Li H, Li D, Xu Z, Li J, Cui S, Yang S, Liu N, Duan Z (2009) Candidate porcine kobuvirus, China. Emerg Infect Dis 15: 823-825.
43. Zhang W, Shen Q, Hua X, Cui L, Liu J, Yang S (2008) The first Chinese porcine sapovirus strain that contributed to an outbreak of gastroenteritis in piglets. J Virol 82: 8239-8240.