Identification and characterization of deer astroviruses

Journal of General Virology

Volumn 91, Issue 11, 2010, Pages 2719-2722

  Smits, Saskia L ^a   Van Leeuwen, Marije ^a   Kuiken, Thijs ^a   Hammer, Anne S ^b   Simon, James H ^a   Osterhaus, Albert D M E ^a  

^a ERASMUS MEDICAL CENTER   (Netherlands)

^b TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEIC ACID; VIRUS RNA;

ANIMAL DISEASE; ARTICLE; ASTROVIRUS; DEER; DIARRHEA; GASTROINTESTINAL DISEASE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PURIFICATION; RNA SEQUENCE; SEROTYPE; VIRUS IDENTIFICATION; ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GASTROENTERITIS; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; SEQUENCE HOMOLOGY; VETERINARY; VIROLOGY;

ANIMALS; CLUSTER ANALYSIS; DEER; DIARRHEA; GASTROENTERITIS; MAMASTROVIRUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

ASTROVIRIDAE; CAPREOLUS CAPREOLUS; CERVIDAE; MAMASTROVIRUS; RNA VIRUSES;

EID: 78049402195     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.024067-0     Document Type: Article

References (30)

1. Akihara, S., Phan, T. G., Nguyen, T. A., Hansman, G., Okitsu, S. & Ushijima, H. (2005). Existence of multiple outbreaks of viral gastroenteritis among infants in a day care center in Japan. Arch Virol 150, 2061-2075.
2. Allander, T., Emerson, S. U., Engle, R. E., Purcell, R. H. & Bukh, J. (2001). A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc Natl Acad Sci U S A 98, 11609-11614.
3. Allander, T., Tammi, M. T., Eriksson, M., Bjerkner, A., Tiveljung-Lindell, A. & Andersson, B. (2005). Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A 102, 12891-12896.
4. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
5. Atkins, A.,Wellehan, J. F., Jr,Childress, A. L.,Archer, L. L., Fraser, W. A. & Citino, S. B. (2009). Characterization of an outbreak of astroviral diarrhea in a group of cheetahs (Acinonyx jubatus). Vet Microbiol 136, 160-165.
6. Finkbeiner, S. R., Kirkwood, C. D. & Wang, D. (2008). Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea. Virol J 5, 117.
7. Finkbeiner, S. R., Holtz, L. R., Jiang, Y., Rajendran, P., Franz, C. J., Zhao, G., Kang, G. & Wang, D. (2009a). Human stool contains a previously unrecognized diversity of novel astroviruses. Virol J 6, 161.
8. Finkbeiner, S. R., Le, B. M., Holtz, L. R., Storch, G. A. & Wang, D. (2009b). Detection of newly described astrovirus MLB1 in stool samples from children. Emerg Infect Dis 15, 441-444.
9. Finkbeiner, S. R., Li, Y., Ruone, S., Conrardy, C., Gregoricus, N., Toney, D., Virgin, H. W., Anderson, L. J., Vinje, J. & other authors (2009c). Identification of a novel astrovirus (astrovirus VA1) associated with an outbreak of acute gastroenteritis. J Virol 83, 10836-10839.
10. Glass, R. I., Noel, J., Mitchell, D., Herrmann, J. E., Blacklow, N. R., Pickering, L. K., Dennehy, P., Ruiz-Palacios, G., de Guerrero, M. L. & Monroe, S. S. (1996). The changing epidemiology of astrovirus-associated gastroenteritis: a review. Arch Virol Suppl 12, 287-300.
11. Gough, R. E., Collins, M. S., Borland, E. & Keymer, L. F. (1984). Astrovirus-like particles associated with hepatitis in ducklings. Vet Rec 114, 279.
12. Imada, T., Yamaguchi, S., Mase, M., Tsukamoto, K., Kubo, M. & Morooka, A. (2000). Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA. J Virol 74, 8487-8493.
13. Indik, S., Valicek, L., Smid, B., Dvorakova, H. & Rodak, L. (2006). Isolation and partial characterization of a novel porcine astrovirus. Vet Microbiol 117, 276-283.
14. Kapoor, A., Li, L., Victoria, J., Oderinde, B., Mason, C., Pandey, P., Zaidi, S. Z. & Delwart, E. (2009). Multiple novel astrovirus species in human stool. J Gen Virol 90, 2965-2972.
15. Klein, E. J., Boster, D. R., Stapp, J. R., Wells, J. G., Qin, X., Clausen, C. R., Swerdlow, D. L., Braden, C. R. & Tarr, P. I. (2006). Diarrhea etiology in a Children's Hospital Emergency Department: a prospective cohort study. Clin Infect Dis 43, 807-813.
16. Kuiken, T., Leighton, F. A., Fouchier, R. A., LeDuc, J. W., Peiris, J. S., Schudel, A., Stohr, K. & Osterhaus, A. D. (2005). Public health. Pathogen surveillance in animals. Science 309, 1680-1681.
17. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL-X version 2.0. Bioinformatics 23, 2947-2948.
18. Lukashov, V. V. & Goudsmit, J. (2002). Evolutionary relationships among Astroviridae. J Gen Virol 83, 1397-1405.
19. Lyman, W. H., Walsh, J. F., Kotch, J. B., Weber, D. J., Gunn, E. & Vinje, J. (2009). Prospective study of etiologic agents of acute gastroenteritis outbreaks in child care centers. J Pediatr 154, 253-257.
20. Mittelholzer, C., Englund, L., Hedlund, K. O., Dietz, H. H. & Svensson, L. (2003). Detection and sequence analysis of Danish and Swedish strains of mink astrovirus. J Clin Microbiol 41, 5192-5194.
21. Moser, L. A. & Schultz-Cherry, S. (2005). Pathogenesis of astrovirus infection. Viral Immunol 18, 4-10.
22. Rivera, R., Nollens, H. H., Venn-Watson, S., Gulland, F. M. & Wellehan, J. F., Jr (2010). Characterization of phylogenetically diverse astroviruses of marine mammals. J Gen Virol 91, 166-173.
23. Soares, C. C., Maciel de Albuquerque, M. C., Maranhao, A. G., Rocha, L. N., Ramirez, M. L., Benati, F. J., Timenetsky Mdo, C. & Santos, N. (2008). Astrovirus detection in sporadic cases of diarrhea among hospitalized and non-hospitalized children in Rio De Janeiro, Brazil, from 1998 to 2004. J Med Virol 80, 113-117.
24. Strain, E., Kelley, L. A., Schultz-Cherry, S., Muse, S. V. & Koci, M. D. (2008). Genomic analysis of closely related astroviruses. J Virol 82, 5099-5103.
25. Svraka, S., Duizer, E., Vennema, H., de Bruin, E., van der Veer, B., Dorresteijn, B. & Koopmans, M. (2007). Etiological role of viruses in outbreaks of acute gastroenteritis in The Netherlands from 1994 through 2005. J Clin Microbiol 45, 1389-1394.
26. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
27. Toffan, A., Jonassen, C. M., De Battisti, C., Schiavon, E., Kofstad, T., Capua, I. & Cattoli, G. (2009). Genetic characterization of a new astrovirus detected in dogs suffering from diarrhoea. Vet Microbiol 139, 147-152.
28. van Hemert, F. J., Lukashov, V. V. & Berkhout, B. (2007). Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function. Virol J 4, 25.
29. van Leeuwen, M., Williams, M. M., Koraka, P., Simon, J. H., Smits, S. L. & Osterhaus, A. D. (2010). Human picobirnaviruses identified by molecular screening of diarrhoea samples. J Clin Microbiol 48, 1787-1794.
30. Zhu, H. C., Chu, D. K., Liu, W., Dong, B. Q., Zhang, S. Y., Zhang, J. X., Li, L. F., Vijaykrishna, D., Smith, G. J. & other authors (2009). Detection of diverse astroviruses from bats in China. J Gen Virol 90, 883-887.