Multiple novel and prevalent astroviruses in pigs

Veterinary Microbiology

Volumn 149, Issue 3-4, 2011, Pages 316-323

  Luo, Zhiyao ^a   Roi, Stéphanie ^a   Dastor, Margaux ^a   Gallice, Estelle ^a   Laurin, Marc André ^a   L'Homme, Yvan ^a  

^a CANADIAN FOOD INSPECTION AGENCY   (Canada)

Author keywords

Astrovirus; Phylogeny; Pigs; Taxonomy

Indexed keywords

PLASMID DNA; VIRUS DNA; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; ASTROVIRUS; ASTROVIRUS INFECTION; CANADA; FECES ANALYSIS; GENETIC VARIABILITY; GROUPS BY AGE; HUMAN; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEROPREVALENCE; SLAUGHTERHOUSE; SWINE DISEASE; VIRUS CAPSID; VIRUS DETECTION; VIRUS GENOME;

ANIMALS; ASTROVIRIDAE; ASTROVIRIDAE INFECTIONS; CAPSID PROTEINS; FECES; GENETIC VARIATION; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVALENCE; QUEBEC; SWINE; SWINE DISEASES;

ANIMALIA; ASTROVIRIDAE; MAMASTROVIRUS; MIRIDAE; PORCINE ASTROVIRUS; SUIDAE; SUS;

EID: 79953039178     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2010.11.026     Document Type: Article

References (32)

1. Akihara S., Phan T.G., Nguyen T.A., Hansman G., Okitsu S., Ushijima H. Existence of multiple outbreaks of viral gastroenteritis among infants in a day care center in Japan. Arch. Virol. 2005, 150:2061-2075.
2. Atkins A., Wellehan J.F., Childress A.L., Archer L.L., Fraser W.A., Citino S.B. Characterization of an outbreak of astroviral diarrhea in a group of cheetahs (Acinonyx jubatus). Vet. Microbiol. 2009, 136:160-165.
3. Bridger J.C. Detection by electron microscopy of caliciviruses, astroviruses and rotavirus-like particles in the faeces of piglets with diarrhoea. Vet. Rec. 1980, 107:532-533.
4. Bridger J.C., Hall G.A., Brown J.F. Characterization of a calici-like virus (Newbury agent) found in association with astrovirus in bovine diarrhea. Infect. Immun. 1984, 43:133-138.
5. Chu D.K., Poon L.L., Guan Y., Peiris J.S. Novel astroviruses in insectivorous bats. J. Virol. 2008, 82:9107-9114.
6. Dennehy P.H., Nelson S.M., Spangenberger S., Noel J.S., Monroe S.S., Glass R.I. A prospective case-control study of the role of astrovirus in acute diarrhea among hospitalized young children. J. Infect. Dis. 2001, 184:10-15.
7. Finkbeiner S.R., Kirkwood C.D., Wang D. Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea. Virol. J. 2008, 5:117.
8. Finkbeiner S.R., Le B.M., Holtz L.R., Storch G.A., Wang D. Detection of newly described astrovirus MLB1 in stool samples from children. Emerg. Infect. Dis. 2009, 15:441-444.
9. Gallimore C.I., Taylor C., Gennery A.R., Cant A.J., Galloway A., Iturriza-Gomara M., Gray J.J. Environmental monitoring for gastroenteric viruses in a pediatric primary immunodeficiency unit. J. Clin. Microbiol. 2006, 44:395-399.
10. Glass R.I., Noel J., Mitchell D., Herrmann J.E., Blacklow N.R., Pickering L.K., Dennehy P., Ruiz-Palacios G., de Guerrero M.L., Monroe S.S. The changing epidemiology of astrovirus-associated gastroenteritis: a review. Arch. Virol. Suppl. 1996, 12:287-300.
11. Gray J.J., Wreghitt T.G., Cubitt W.D., Elliot P.R. An outbreak of gastroenteritis in a home for the elderly associated with astrovirus type 1 and human calicivirus. J. Med. Virol. 1987, 23:377-381.
12. Green K.Y. Caliciviridae: The Noroviruses. Fields Virology 2007, 949-979. Wolters Kluwer Health/Lippincott Williams & Wilkins, Philadelphia. D.M. Knipe, P.M. Howley (Eds.).
13. Indik S., Valicek L., Smid B., Dvorakova H., Rodak L. Isolation and partial characterization of a novel porcine astrovirus. Vet. Microbiol. 2006, 117:276-283.
14. Jonassen C.M., Jonassen T.O., Grinde B. A common RNA motif in the 3′ end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. J. Gen. Virol. 1998, 79(Pt. 4):715-718.
15. Jonassen C.M., Jonassen T.O., Saif Y.M., Snodgrass D.R., Ushijima H., Shimizu M., Grinde B. Comparison of capsid sequences from human and animal astroviruses. J. Gen. Virol. 2001, 82:1061-1067.
16. Kapoor A., Li L., Victoria J., Oderinde B., Mason C., Pandey P., Zaidi S.Z., Delwart E. Multiple novel astrovirus species in human stool. J. Gen. Virol. 2009, 90:2965-2972.
17. Kozak M. Structural features in eukaryotic mRNAs that modulate the initiation of translation. J. Biol. Chem. 1991, 266:19867-19870.
18. L'Homme Y., Sansregret R., Plante-Fortier É., Lacroix G., Lamontagne A.-M., Ouardani M., Simard G., Simard C. Genetic diversity of porcine Norovirus and Sapovirus: Canada, 2005-2007. Arch. Virol. 2009, 154:581-593.
19. Lukashov V.V., Goudsmit J. Evolutionary relationships among Astroviridae. J. Gen. Virol. 2002, 83:1397-1405.
20. Madeley C.R., Cosgrove B.P. Letter: 28nm particles in faeces in infantile gastroenteritis. Lancet 1975, 2:451-452.
21. Marshall J.A., Kennett M.L., Rodger S.M., Studdert M.J., Thompson W.L., Gust I.D. Virus and virus-like particles in the faeces of cats with and without diarrhoea. Aust. Vet. J. 1987, 64:100-105.
22. Mendez E., Arias C.F. Astroviruses. Fields Virology 2007, 981-1000. Lippincott Williams & Wilkins, Philadelphia. D.M. Knipe, P.M. Howley (Eds.).
23. Monroe, S.S., 2005 Astroviridae. In: Carter, M.J., Herrmann J., Mitchel, J.K., Sanchez-Fauquier, A. (Eds.) Virus Taxonomy, In: Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., Ball, L.A., (Eds.) Eighth Report of the International Committee on Taxonomy of Viruses, Elsevier, Amsterdam, pp. 859-864.
24. Noel J.S., Lee T.W., Kurtz J.B., Glass R.I., Monroe S.S. Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J. Clin. Microbiol. 1995, 33:797-801.
25. Rivera R., Nollens H.H., Venn-Watson S., Gulland F.M., Wellehan J.F. Characterization of phylogenetically diverse astroviruses of marine mammals. J. Gen. Virol. 2010, 91:166-173.
26. Scotto-Lavino E., Du G., Frohman M.A. 3′ end cDNA amplification using classic RACE. Nat. Protoc. 2006, 1:2742-2745.
27. Shimizu M., Shirai J., Narita M., Yamane T. Cytopathic astrovirus isolated from porcine acute gastroenteritis in an established cell line derived from porcine embryonic kidney. J. Clin. Microbiol. 1990, 28:201-206.
28. Snodgrass D.R., Gray E.W. Detection and transmission of 30nm virus particles (astroviruses) in faeces of lambs with diarrhoea. Arch. Virol. 1977, 55:287-291.
29. Toffan A., Jonassen C.M., De B.C., Schiavon E., Kofstad T., Capua I., Cattoli G. Genetic characterization of a new astrovirus detected in dogs suffering from diarrhoea. Vet. Microbiol. 2009, 139:147-152.
30. Wang Q.H., Kakizawa J., Wen L.Y., Shimizu M., Nishio O., Fang Z.Y., Ushijima H. Genetic analysis of the capsid region of astroviruses. J. Med. Virol. 2001, 64:245-255.
31. Woode G.N., Bridger J.C. Isolation of small viruses resembling astroviruses and caliciviruses from acute enteritis of calves. J. Med. Microbiol. 1978, 11:441-452.
32. Zhu H.C., Chu D.K., Liu W., Dong B.Q., Zhang S.Y., Zhang J.X., Li L.F., Vijaykrishna D., Smith G.J., Chen H.L., Poon L.L., Peiris J.S., Guan Y. Detection of diverse astroviruses from bats in China. J. Gen. Virol. 2009, 90:883-887.