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Volumn 75, Issue , 2013, Pages 67-77

Bacterial biodiversity in deep-sea sediments from two regions of contrasting surface water productivity near the Crozet Islands, Southern Ocean

Author keywords

Antarctic; Bacteria; Carbon sequestration; Crozet; Deep sea; Diversity; Sediment

Indexed keywords

ANTARCTIC; CARBON SEQUESTRATION; CROZET; DEEP SEA; DIVERSITY;

EID: 84874582252     PISSN: 09670637     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dsr.2012.12.012     Document Type: Article
Times cited : (21)

References (87)
  • 1
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental-studies in microbiology
    • Amann R.I., et al. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental-studies in microbiology. J. Bacteriol. 1990, 172:762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1
  • 2
    • 33748317969 scopus 로고    scopus 로고
    • Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea
    • Arakawa S., et al. Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea. Extremophiles 2006, 10:311-319.
    • (2006) Extremophiles , vol.10 , pp. 311-319
    • Arakawa, S.1
  • 3
    • 0034754117 scopus 로고    scopus 로고
    • Temporal variability in phytodetritus and megabenthic activity at the seabed in the deep Northeast Atlantic
    • Bett B.J., et al. Temporal variability in phytodetritus and megabenthic activity at the seabed in the deep Northeast Atlantic. Prog. Oceanogr. 2001, 50:349-368.
    • (2001) Prog. Oceanogr. , vol.50 , pp. 349-368
    • Bett, B.J.1
  • 4
    • 84858862141 scopus 로고    scopus 로고
    • The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments
    • Bienhold C., et al. The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments. ISME J. 2012, 6:724-732.
    • (2012) ISME J. , vol.6 , pp. 724-732
    • Bienhold, C.1
  • 5
    • 33644951344 scopus 로고    scopus 로고
    • Bacterial diversity in organically-enriched fish farm sediments
    • Bissett A., et al. Bacterial diversity in organically-enriched fish farm sediments. FEMS Microbiol. Ecol. 2006, 55:48-56.
    • (2006) FEMS Microbiol. Ecol. , vol.55 , pp. 48-56
    • Bissett, A.1
  • 6
    • 44649186238 scopus 로고    scopus 로고
    • Flavobacterial response to organic pollution
    • Bissett A., et al. Flavobacterial response to organic pollution. Aquat. Microb. Ecol. 2008, 51:31-43.
    • (2008) Aquat. Microb. Ecol. , vol.51 , pp. 31-43
    • Bissett, A.1
  • 7
    • 0029663220 scopus 로고    scopus 로고
    • Effect of organic enrichments on hydrolytic potentials and growth of bacteria in deep-sea sediments
    • Boetius A., Lochte K. Effect of organic enrichments on hydrolytic potentials and growth of bacteria in deep-sea sediments. Mar. Ecol. Prog. Ser. 1996, 140:239-250.
    • (1996) Mar. Ecol. Prog. Ser. , vol.140 , pp. 239-250
    • Boetius, A.1    Lochte, K.2
  • 8
    • 0038369933 scopus 로고    scopus 로고
    • Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
    • Bowman J.P., McCuaig R.D. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl. Environ. Microbiol. 2003, 69:2463-2483.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2463-2483
    • Bowman, J.P.1    McCuaig, R.D.2
  • 9
    • 0037693813 scopus 로고    scopus 로고
    • Prokaryotic metabolic activity and community structure in Antarctic continental shelf sediments
    • Bowman J.P., et al. Prokaryotic metabolic activity and community structure in Antarctic continental shelf sediments. Appl. Environ. Microbiol. 2003, 69:2448-2462.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2448-2462
    • Bowman, J.P.1
  • 10
    • 0001463548 scopus 로고
    • Non-parametric estimation of the number of classes in a population
    • Chao A. Non-parametric estimation of the number of classes in a population. Scan. J. Stat. 1984, 11:265-270.
    • (1984) Scan. J. Stat. , vol.11 , pp. 265-270
    • Chao, A.1
  • 12
    • 0034469143 scopus 로고    scopus 로고
    • Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
    • Cottrell M.,.T., Kirchman D.,.L. Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl. Environ. Microbiol. 2000, 66:5116-5122.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5116-5122
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 13
    • 0033833853 scopus 로고    scopus 로고
    • Bacterial response to seasonal changes in labile organic matter composition on the continental shelf and bathyal sediments of the Cretan Sea
    • Danovaro R., et al. Bacterial response to seasonal changes in labile organic matter composition on the continental shelf and bathyal sediments of the Cretan Sea. Progr. Oceanogr. 2000, 46:345-366.
    • (2000) Progr. Oceanogr. , vol.46 , pp. 345-366
    • Danovaro, R.1
  • 14
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages
    • Delong E.F., et al. Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages. Limnol. Oceanogr. 1993, 38:924-934.
    • (1993) Limnol. Oceanogr. , vol.38 , pp. 924-934
    • Delong, E.F.1
  • 15
    • 0030878975 scopus 로고    scopus 로고
    • Microbial respiration and diffusive oxygen uptake of deep-sea sediments in the Southern Ocean (ANTARES-I cruise)
    • De Wit R., et al. Microbial respiration and diffusive oxygen uptake of deep-sea sediments in the Southern Ocean (ANTARES-I cruise). Deep. Sea Res. 1997, 44:1053-1068. Part II.
    • (1997) Deep. Sea Res. , vol.44 , Issue.PART II , pp. 1053-1068
    • De Wit, R.1
  • 16
    • 0034465723 scopus 로고    scopus 로고
    • The effect of water depth on bacterial numbers, thymidine incorporation rates and C:N ratios in northeast Atlantic surficial sediments
    • Dixon J.L., Turley C.M. The effect of water depth on bacterial numbers, thymidine incorporation rates and C:N ratios in northeast Atlantic surficial sediments. Hydrobiologia 2000, 440:217-225.
    • (2000) Hydrobiologia , vol.440 , pp. 217-225
    • Dixon, J.L.1    Turley, C.M.2
  • 17
    • 0035673431 scopus 로고    scopus 로고
    • The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica 1994-1997
    • Ducklow H., et al. The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica 1994-1997. Deep. Sea Res. 2001, 48:4199-4221. Part II.
    • (2001) Deep. Sea Res. , vol.48 , Issue.PART II , pp. 4199-4221
    • Ducklow, H.1
  • 18
    • 0034758636 scopus 로고    scopus 로고
    • Bacterial abundance and activity in deep-sea sediments from the eastern North Atlantic
    • Eardly D.F., et al. Bacterial abundance and activity in deep-sea sediments from the eastern North Atlantic. Progr. Oceanogr. 2001, 50:245-259.
    • (2001) Progr. Oceanogr. , vol.50 , pp. 245-259
    • Eardly, D.F.1
  • 19
    • 49249138150 scopus 로고    scopus 로고
    • Active bacterial community structure along vertical redox gradients in Baltic Sea sediment
    • Edlund A., et al. Active bacterial community structure along vertical redox gradients in Baltic Sea sediment. Environ. Microbiol. 2008, 10:2051-2063.
    • (2008) Environ. Microbiol. , vol.10 , pp. 2051-2063
    • Edlund, A.1
  • 20
    • 27844507542 scopus 로고    scopus 로고
    • Population dynamics of Cytophaga-Flavobacteria during marine phytoplankton blooms analyzed by real-time quantitative PCR
    • Fandino L.B., et al. Population dynamics of Cytophaga-Flavobacteria during marine phytoplankton blooms analyzed by real-time quantitative PCR. Aquat. Microb. Ecol. 2005, 40:251-257.
    • (2005) Aquat. Microb. Ecol. , vol.40 , pp. 251-257
    • Fandino, L.B.1
  • 21
    • 42149132675 scopus 로고    scopus 로고
    • Effect of phytoplankton bloom deposition on benthic bacterial communities in two contrasting sediments in the southern North Sea
    • Franco M.A., et al. Effect of phytoplankton bloom deposition on benthic bacterial communities in two contrasting sediments in the southern North Sea. Aquat. Microb. Ecol. 2007, 48:241-254.
    • (2007) Aquat. Microb. Ecol. , vol.48 , pp. 241-254
    • Franco, M.A.1
  • 22
    • 84889461592 scopus 로고    scopus 로고
    • Deep-sea benthic sampling
    • Blackwell Scientific Publications, Oxford, N.A. Holmes, A.D. McIntyre (Eds.)
    • Gage J.D., Bett B.J. Deep-sea benthic sampling. Methods for the Study of the Marine Benthos 2005, 273-325. Blackwell Scientific Publications, Oxford. 3rd edition. N.A. Holmes, A.D. McIntyre (Eds.).
    • (2005) Methods for the Study of the Marine Benthos , pp. 273-325
    • Gage, J.D.1    Bett, B.J.2
  • 23
    • 34147144110 scopus 로고    scopus 로고
    • Adherent bacteria in heavy metal contaminated marine sediments
    • Gillan D.C., Pernet P. Adherent bacteria in heavy metal contaminated marine sediments. Biofouling 2007, 23:1-13.
    • (2007) Biofouling , vol.23 , pp. 1-13
    • Gillan, D.C.1    Pernet, P.2
  • 24
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization
    • Glöckner F.O., et al. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 1999, 65:3721-3726.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3721-3726
    • Glöckner, F.O.1
  • 25
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good I.L. The population frequencies of species and the estimation of population parameters. Biometrika 1953, 80:193-201.
    • (1953) Biometrika , vol.80 , pp. 193-201
    • Good, I.L.1
  • 26
    • 0036272385 scopus 로고    scopus 로고
    • Biological responses to seasonally varying fluxes of organic matter to the ocean floor: a review
    • Gooday A.J. Biological responses to seasonally varying fluxes of organic matter to the ocean floor: a review. J. Oceanogr. 2002, 58:305-332.
    • (2002) J. Oceanogr. , vol.58 , pp. 305-332
    • Gooday, A.J.1
  • 27
    • 0002051540 scopus 로고    scopus 로고
    • A user-friendly biological sequence alignment editor for Windows 95/98/NT
    • Hall T. A user-friendly biological sequence alignment editor for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.1
  • 28
    • 43149102303 scopus 로고    scopus 로고
    • Comparison of deep-sea sediment microbial communities in the Eastern Mediterranean
    • Heijs S.K., et al. Comparison of deep-sea sediment microbial communities in the Eastern Mediterranean. FEMS Microbiol. Ecol. 2008, 64:362-377.
    • (2008) FEMS Microbiol. Ecol. , vol.64 , pp. 362-377
    • Heijs, S.K.1
  • 29
    • 84875615765 scopus 로고
    • DGGE from
    • Helms, C. 1990. DGGE from http://www.hg.wustl.edu/hdk_lab_manual/dgge/dgge1.html.
    • (1990)
    • Helms, C.1
  • 30
    • 69649084742 scopus 로고    scopus 로고
    • Pore-fluid Fe isotopes reflect the extent of benthic Fe redox recycling: evidence from continental shelf and deep-sea sediments
    • Homoky W.B., et al. Pore-fluid Fe isotopes reflect the extent of benthic Fe redox recycling: evidence from continental shelf and deep-sea sediments. Geology 2009, 37:751-754.
    • (2009) Geology , vol.37 , pp. 751-754
    • Homoky, W.B.1
  • 31
    • 0037742699 scopus 로고    scopus 로고
    • Bacterial diversity patterns along a gradient of primary productivity
    • Horner-Devine M.C., et al. Bacterial diversity patterns along a gradient of primary productivity. Ecol. Lett. 2003, 6:613-622.
    • (2003) Ecol. Lett. , vol.6 , pp. 613-622
    • Horner-Devine, M.C.1
  • 32
    • 34250642672 scopus 로고    scopus 로고
    • Balancing the global carbon budget
    • Houghton R.A. Balancing the global carbon budget. Ann. Rev. Earth Plan. Sci. 2007, 35:313-347.
    • (2007) Ann. Rev. Earth Plan. Sci. , vol.35 , pp. 313-347
    • Houghton, R.A.1
  • 33
    • 33748769754 scopus 로고    scopus 로고
    • Microbial community diversity associated with carbon and nitrogen cycling in permeable shelf sediments
    • Hunter E.M., et al. Microbial community diversity associated with carbon and nitrogen cycling in permeable shelf sediments. Appl. Environ. Microbiol. 2006, 72:5689-5701.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5689-5701
    • Hunter, E.M.1
  • 34
    • 35348838894 scopus 로고    scopus 로고
    • Two abyssal sites in the Southern Ocean influenced by different organic matter inputs: Environmental characterization and preliminary observations on the benthic foraminifera
    • Hughes J.A., et al. Two abyssal sites in the Southern Ocean influenced by different organic matter inputs: Environmental characterization and preliminary observations on the benthic foraminifera. Deep Sea Res. II 2007, 54:2275-2290.
    • (2007) Deep Sea Res. II , vol.54 , pp. 2275-2290
    • Hughes, J.A.1
  • 35
    • 33644505436 scopus 로고    scopus 로고
    • Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
    • Inagaki F., et al. Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proc. Natl. Acad. Sci. USA 2006, 103:2815-2820.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 2815-2820
    • Inagaki, F.1
  • 36
    • 34548737680 scopus 로고    scopus 로고
    • Feast and famine - microbial life in the deep-sea bed
    • Jørgensen B.B., Boetius A. Feast and famine - microbial life in the deep-sea bed. Nat. Rev. Microbiol. 2007, 5:770-781.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 770-781
    • Jørgensen, B.B.1    Boetius, A.2
  • 37
    • 0242380174 scopus 로고    scopus 로고
    • Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments
    • Koizumi Y., et al. Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments. FEMS Microbiol. Ecol. 2003, 46:147-157.
    • (2003) FEMS Microbiol. Ecol. , vol.46 , pp. 147-157
    • Koizumi, Y.1
  • 38
    • 0035670024 scopus 로고    scopus 로고
    • Environmental influences on regional deep-sea species diversity
    • Levin L.A., et al. Environmental influences on regional deep-sea species diversity. Ann. Rev. Ecol. Syst. 2001, 32:51-93.
    • (2001) Ann. Rev. Ecol. Syst. , vol.32 , pp. 51-93
    • Levin, L.A.1
  • 39
    • 0032882298 scopus 로고    scopus 로고
    • Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench
    • Li L.N., et al. Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench. Mar. Biotech. 1999, 1:391-400.
    • (1999) Mar. Biotech. , vol.1 , pp. 391-400
    • Li, L.N.1
  • 40
    • 0032990367 scopus 로고    scopus 로고
    • Bacterial diversity in deep-sea sediments from different depths
    • Li L.N., et al. Bacterial diversity in deep-sea sediments from different depths. Biodiv. Conserv. 1999, 8:659-677.
    • (1999) Biodiv. Conserv. , vol.8 , pp. 659-677
    • Li, L.N.1
  • 41
    • 0037164216 scopus 로고    scopus 로고
    • Community structure and activity of sulfate-reducing bacteria in an intertidal surface sediment: a multi-method approach
    • Llobet-Brossa E., et al. Community structure and activity of sulfate-reducing bacteria in an intertidal surface sediment: a multi-method approach. Aquat. Microb. Ecol. 2002, 29:211-226.
    • (2002) Aquat. Microb. Ecol. , vol.29 , pp. 211-226
    • Llobet-Brossa, E.1
  • 42
    • 0027085487 scopus 로고
    • Bacterial standing stock and consumption of organic-carbon in the benthic boundary-layer of the abyssal North-Atlantic
    • Kluwer, Dordrecht, NATO ASI Series C
    • Lochte K. Bacterial standing stock and consumption of organic-carbon in the benthic boundary-layer of the abyssal North-Atlantic. Deep-Sea Food Chains and the Global Carbon Cycle 1992, vol. 360:1-10. Kluwer, Dordrecht, NATO ASI Series C.
    • (1992) Deep-Sea Food Chains and the Global Carbon Cycle , vol.360 , pp. 1-10
    • Lochte, K.1
  • 43
    • 0141788252 scopus 로고    scopus 로고
    • Bacterial diversity in hydrothermal sediment and epsilon proteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge
    • Lopez-Garcia P., et al. Bacterial diversity in hydrothermal sediment and epsilon proteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge. Environ. Microbiol. 2003, 5:961-976.
    • (2003) Environ. Microbiol. , vol.5 , pp. 961-976
    • Lopez-Garcia, P.1
  • 44
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig W., et al. ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32:1363-1371.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 45
    • 9344247522 scopus 로고    scopus 로고
    • Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment
    • Manz W., et al. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment. Microbiology UK 1996, 142:1097-1106.
    • (1996) Microbiology UK , vol.142 , pp. 1097-1106
    • Manz, W.1
  • 46
    • 35348897125 scopus 로고    scopus 로고
    • Controls on the sediment geochemistry in the Crozet region
    • Marsh R., et al. Controls on the sediment geochemistry in the Crozet region. Deep. Sea Res. II 2007, 54:2260-2274.
    • (2007) Deep. Sea Res. II , vol.54 , pp. 2260-2274
    • Marsh, R.1
  • 47
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin A.P. Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl. Environ. Microbiol. 2002, 68:3673-3682.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 48
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig A.E., et al. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 1999, 65:1721-1730.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1721-1730
    • McCaig, A.E.1
  • 49
    • 21244480848 scopus 로고    scopus 로고
    • Similar rapid response to phytodetritus deposition in shallow and deep-sea sediments
    • Moodley L., et al. Similar rapid response to phytodetritus deposition in shallow and deep-sea sediments. J. Mar. Res. 2005, 63:457-469.
    • (2005) J. Mar. Res. , vol.63 , pp. 457-469
    • Moodley, L.1
  • 50
    • 33646181371 scopus 로고    scopus 로고
    • Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Rømø Basin
    • Musat N., et al. Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Rømø Basin. Wadden Sea. Syst. Appl. Microbiol. 2006, 29:333-348.
    • (2006) Wadden Sea. Syst. Appl. Microbiol. , vol.29 , pp. 333-348
    • Musat, N.1
  • 51
    • 14344250484 scopus 로고    scopus 로고
    • Diversity and vertical distribution of cultured and uncultured delta-Proteobacteria in an intertidal mud flat of the Wadden Sea
    • Mussmann M., et al. Diversity and vertical distribution of cultured and uncultured delta-Proteobacteria in an intertidal mud flat of the Wadden Sea. Environ. Microbiol. 2005, 7:405-418.
    • (2005) Environ. Microbiol. , vol.7 , pp. 405-418
    • Mussmann, M.1
  • 52
    • 0027460328 scopus 로고
    • Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16s ribosomal-RNA
    • Muyzer G., et al. Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16s ribosomal-RNA. Appl. Environ. Microbiol. 1993, 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1
  • 53
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G., Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek (Int. J. Gen. Mol. Microbiol.) 1998, 73:127-141.
    • (1998) Antonie Van Leeuwenhoek (Int. J. Gen. Mol. Microbiol.) , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 54
    • 12544256650 scopus 로고    scopus 로고
    • Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments
    • Nercessian O., et al. Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments. Environ. Microbiol. 2005, 7:118-132.
    • (2005) Environ. Microbiol. , vol.7 , pp. 118-132
    • Nercessian, O.1
  • 55
    • 0032424081 scopus 로고    scopus 로고
    • Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes
    • Neef A., et al. Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Microbiology-UK 1998, 144:3257-3266.
    • (1998) Microbiology-UK , vol.144 , pp. 3257-3266
    • Neef, A.1
  • 56
    • 43049156436 scopus 로고    scopus 로고
    • Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean
    • Obernosterer I., et al. Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean. Deep. Sea Res. II 2008, 55:777-789.
    • (2008) Deep. Sea Res. II , vol.55 , pp. 777-789
    • Obernosterer, I.1
  • 57
    • 0347794946 scopus 로고    scopus 로고
    • Recent studies on bacterial populations and processes in subseafloor sediments: a review
    • Parkes R.J., et al. Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeol. J. 2000, 8:11-28.
    • (2000) Hydrogeol. J. , vol.8 , pp. 11-28
    • Parkes, R.J.1
  • 58
    • 35348893686 scopus 로고    scopus 로고
    • Dissolved iron in the vicinity of the Crozet Islands, Southern Ocean
    • Planquette H., et al. Dissolved iron in the vicinity of the Crozet Islands, Southern Ocean. Deep. Sea Res. II 2007, 54:1999-2019.
    • (2007) Deep. Sea Res. II , vol.54 , pp. 1999-2019
    • Planquette, H.1
  • 59
    • 23744440986 scopus 로고    scopus 로고
    • Links between geographic location, environmental factors, and microbial community composition in sediments of the Eastern Mediterranean Sea
    • Polymenakou P.N., et al. Links between geographic location, environmental factors, and microbial community composition in sediments of the Eastern Mediterranean Sea. Microb. Ecol. 2005, 49:367-378.
    • (2005) Microb. Ecol. , vol.49 , pp. 367-378
    • Polymenakou, P.N.1
  • 60
    • 27744530866 scopus 로고    scopus 로고
    • Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries
    • Polymenakou P.N., et al. Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries. Microb. Ecol. 2005, 50:447-462.
    • (2005) Microb. Ecol. , vol.50 , pp. 447-462
    • Polymenakou, P.N.1
  • 61
    • 59049089418 scopus 로고    scopus 로고
    • Southern Ocean deep-water carbon export enhanced by natural iron fertilization
    • 577-U81
    • Pollard R.T., et al. Southern Ocean deep-water carbon export enhanced by natural iron fertilization. Nature 2009, 457. 577-U81.
    • (2009) Nature , vol.457
    • Pollard, R.T.1
  • 62
    • 84864134721 scopus 로고    scopus 로고
    • SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes
    • Pruesse E., et al. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 2012, 28:1823-1829.
    • (2012) Bioinformatics , vol.28 , pp. 1823-1829
    • Pruesse, E.1
  • 63
    • 34548709102 scopus 로고    scopus 로고
    • Impact of small-scale biogenic sediment structures on bacterial distribution and activity in Arctic deep-sea sediments
    • Quéric N.V., Soltwedel T. Impact of small-scale biogenic sediment structures on bacterial distribution and activity in Arctic deep-sea sediments. Mar. Ecol. 2007, 28:66-74.
    • (2007) Mar. Ecol. , vol.28 , pp. 66-74
    • Quéric, N.V.1    Soltwedel, T.2
  • 64
    • 0035158607 scopus 로고    scopus 로고
    • Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard)
    • Ravenschlag K., et al. Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard). Appl. Environ. Microbiol. 2001, 67:387-395.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 387-395
    • Ravenschlag, K.1
  • 65
    • 0036330519 scopus 로고    scopus 로고
    • Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin
    • Reed D.W., et al. Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin. Appl. Environ. Microbiol. 2002, 68:3759-3770.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3759-3770
    • Reed, D.W.1
  • 66
    • 33747624731 scopus 로고    scopus 로고
    • Global bathymetric patterns of standing stock and body size in the deep-sea benthos
    • Rex M.A., et al. Global bathymetric patterns of standing stock and body size in the deep-sea benthos. Mar. Ecol. Progr. Ser. 2006, 317:1-8.
    • (2006) Mar. Ecol. Progr. Ser. , vol.317 , pp. 1-8
    • Rex, M.A.1
  • 67
    • 38849145997 scopus 로고    scopus 로고
    • Effects of phytoplankton bloom in a coastal ecosystem on the composition of bacterial communities
    • Rink B., et al. Effects of phytoplankton bloom in a coastal ecosystem on the composition of bacterial communities. Aquat. Microb. Ecol. 2007, 48:47-60.
    • (2007) Aquat. Microb. Ecol. , vol.48 , pp. 47-60
    • Rink, B.1
  • 68
    • 0344483898 scopus 로고    scopus 로고
    • The response of the microbial community of marine sediments to organic carbon input under anaerobic conditions
    • Rosselló-Mora R., et al. The response of the microbial community of marine sediments to organic carbon input under anaerobic conditions. Syst. Appl. Microbiol. 1999, 22:237-248.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 237-248
    • Rosselló-Mora, R.1
  • 69
    • 55949085256 scopus 로고    scopus 로고
    • Connections between climate, food limitation, and carbon cycling in abyssal sediment communities
    • Ruhl R.A., et al. Connections between climate, food limitation, and carbon cycling in abyssal sediment communities. Proc. Natl. Acad. Sci. USA 2008, 105:17006-17011.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 17006-17011
    • Ruhl, R.A.1
  • 70
    • 77958034968 scopus 로고    scopus 로고
    • Particle fluxes in the North-East Atlantic and the Southern Ocean
    • Ph.D. Thesis. School of Ocean and Earth Science, University of Southampton.
    • Salter, I., 2007. Particle fluxes in the North-East Atlantic and the Southern Ocean. Ph.D. Thesis. School of Ocean and Earth Science, University of Southampton.
    • (2007)
    • Salter, I.1
  • 71
    • 35348888270 scopus 로고    scopus 로고
    • Estimating carbon, silica and diatom export from a naturally fertilised phytoplankton bloom in the Southern Ocean using PELAGRA: A novel drifting sediment trap
    • Salter I., et al. Estimating carbon, silica and diatom export from a naturally fertilised phytoplankton bloom in the Southern Ocean using PELAGRA: A novel drifting sediment trap. Deep. Sea Res. II 2007, 54:2233-2259.
    • (2007) Deep. Sea Res. II , vol.54 , pp. 2233-2259
    • Salter, I.1
  • 72
    • 0032493132 scopus 로고    scopus 로고
    • Abundance, vertical distribution, and community structure of benthic prokaryotes from permanently cold marine sediments (Svalbard, Arctic Ocean)
    • Sahm K., Berninger U.G. Abundance, vertical distribution, and community structure of benthic prokaryotes from permanently cold marine sediments (Svalbard, Arctic Ocean). Mar. Ecol. Progr. Ser. 1998, 165:71-80.
    • (1998) Mar. Ecol. Progr. Ser. , vol.165 , pp. 71-80
    • Sahm, K.1    Berninger, U.G.2
  • 73
    • 0024506815 scopus 로고
    • Solutions to problems in enumerating sediment bacteria by direct counts
    • Schallenberg M., et al. Solutions to problems in enumerating sediment bacteria by direct counts. Appl. Environ. Microbiol. 1989, 55:1214-1219.
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 1214-1219
    • Schallenberg, M.1
  • 74
    • 0034530892 scopus 로고    scopus 로고
    • Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations
    • Schäfer H., et al. Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations. FEMS Microbiol. Ecol. 2001, 34:243-253.
    • (2001) FEMS Microbiol. Ecol. , vol.34 , pp. 243-253
    • Schäfer, H.1
  • 75
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • John Wiley & Sons Ltd., Chichester, E. Stackebrandt, M. Goodfellow (Eds.)
    • Stahl D.A., Amann R. Development and application of nucleic acid probes. Nucleic Acid Techniques in Bacterial Systematics 1991, 205-248. John Wiley & Sons Ltd., Chichester. E. Stackebrandt, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 76
    • 48949094462 scopus 로고    scopus 로고
    • A comparison of mesopelagic mesozooplankton community structure in the subtropical and subarctic North Pacific Ocean
    • Steinberg D.K., et al. A comparison of mesopelagic mesozooplankton community structure in the subtropical and subarctic North Pacific Ocean. Deep. Sea Res. II 2008, 55:1615-1635.
    • (2008) Deep. Sea Res. II , vol.55 , pp. 1615-1635
    • Steinberg, D.K.1
  • 77
    • 0033848286 scopus 로고    scopus 로고
    • Bacteria in the cold deep-sea benthic boundary layer and sediment-water interface of the NE Atlantic
    • Turley C.M. Bacteria in the cold deep-sea benthic boundary layer and sediment-water interface of the NE Atlantic. FEMS Microbiol. Ecol. 2000, 33:89-99.
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 89-99
    • Turley, C.M.1
  • 78
    • 0034554798 scopus 로고    scopus 로고
    • Characterization of depth-related population variation in microbial communities of a coastal marine sediment using 16S rDNA-based approaches and quinone profiling
    • Urakawa H., et al. Characterization of depth-related population variation in microbial communities of a coastal marine sediment using 16S rDNA-based approaches and quinone profiling. Environ. Microbiol. 2008, 5:542-554.
    • (2008) Environ. Microbiol. , vol.5 , pp. 542-554
    • Urakawa, H.1
  • 79
    • 0032975678 scopus 로고    scopus 로고
    • Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses
    • Van Hannen E.J., et al. Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl. Environ. Microbiol. 1999, 65:795-801.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 795-801
    • Van Hannen, E.J.1
  • 80
    • 35348823565 scopus 로고    scopus 로고
    • Physical conditions controlling the development of a regular phytoplankton bloom north of the Crozet Plateau, Southern Ocean
    • Venables H.J., et al. Physical conditions controlling the development of a regular phytoplankton bloom north of the Crozet Plateau, Southern Ocean. Deep. Sea Res. II 2007, 54:1949-1965.
    • (2007) Deep. Sea Res. II , vol.54 , pp. 1949-1965
    • Venables, H.J.1
  • 81
    • 34548293679 scopus 로고    scopus 로고
    • Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q.,.G.M., et al. Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73:5261-5267.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.G.M.1
  • 82
    • 33746716094 scopus 로고    scopus 로고
    • Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin
    • Webster G., et al. Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol. Ecol. 2006, 58:65-85.
    • (2006) FEMS Microbiol. Ecol. , vol.58 , pp. 65-85
    • Webster, G.1
  • 83
    • 38549100034 scopus 로고    scopus 로고
    • Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean
    • West N.J., et al. Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean. Environ. Microbiol. 2008, 10:738-756.
    • (2008) Environ. Microbiol. , vol.10 , pp. 738-756
    • West, N.J.1
  • 84
    • 0042467653 scopus 로고    scopus 로고
    • In situ experimental evidence of the fate of a phytodetritus pulse at the abyssal sea floor
    • Witte U., et al. In situ experimental evidence of the fate of a phytodetritus pulse at the abyssal sea floor. Nature 2003, 424:763-766.
    • (2003) Nature , vol.424 , pp. 763-766
    • Witte, U.1
  • 85
    • 34547201959 scopus 로고    scopus 로고
    • Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system
    • Woebken D., et al. Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl. Environ. Microbiol. 2007, 73:4648-4657.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 4648-4657
    • Woebken, D.1
  • 86
    • 52149085893 scopus 로고    scopus 로고
    • The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains
    • Yarza P., et al. The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst. Appl. Microbiol. 2008, 31:241-250.
    • (2008) Syst. Appl. Microbiol. , vol.31 , pp. 241-250
    • Yarza, P.1
  • 87
    • 35348921628 scopus 로고    scopus 로고
    • Microbial abundance, activity and iron uptake in vicinity of the Crozet Isles in November 2004-January 2005
    • Zubkov M.V., et al. Microbial abundance, activity and iron uptake in vicinity of the Crozet Isles in November 2004-January 2005. Deep. Sea Res. II 2007, 54:2126-2137.
    • (2007) Deep. Sea Res. II , vol.54 , pp. 2126-2137
    • Zubkov, M.V.1


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