-
1
-
-
0033614964
-
Missing lithotroph identified as new planctomycete
-
Strous M, Fuerst JA, Kramer EH, Logemann S, Muyzer G, et al. (1999) Missing lithotroph identified as new planctomycete. Nature 400: 446-449.
-
(1999)
Nature
, vol.400
, pp. 446-449
-
-
Strous, M.1
Fuerst, J.A.2
Kramer, E.H.3
Logemann, S.4
Muyzer, G.5
-
2
-
-
0028935825
-
Anaerobic oxidation of ammonium is a biologically mediated process
-
van de Graaf AA, Mulder A, de Bruijn P, Jetten MS, Robertson LA, et al. (1995) Anaerobic oxidation of ammonium is a biologically mediated process. Appl Environ Microbiol 61: 1246-1251.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1246-1251
-
-
van de Graaf, A.A.1
Mulder, A.2
de Bruijn, P.3
Jetten, M.S.4
Robertson, L.A.5
-
3
-
-
0034775280
-
Ammonia-oxidizing bacteria: a model for molecular microbial ecology
-
Kowalchuk GA, Stephen JR, (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55: 485-529.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
4
-
-
0034466757
-
Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys
-
Purkhold U, Pommerening-Roser A, Juretschko S, Schmid MC, Koops HP, et al. (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66: 5368-5382.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5368-5382
-
-
Purkhold, U.1
Pommerening-Roser, A.2
Juretschko, S.3
Schmid, M.C.4
Koops, H.P.5
-
5
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
-
6
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk HP, et al. (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1985-1995
-
-
Treusch, A.H.1
Leininger, S.2
Kletzin, A.3
Schuster, S.C.4
Klenk, H.P.5
-
7
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Konneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, et al. (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Konneke, M.1
Bernhard, A.E.2
de la Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
-
8
-
-
38549131184
-
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
-
de la Torre JR, Walker CB, Ingalls AE, Konneke M, Stahl DA, (2008) Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol 10: 810-818.
-
(2008)
Environ Microbiol
, vol.10
, pp. 810-818
-
-
de la Torre, J.R.1
Walker, C.B.2
Ingalls, A.E.3
Konneke, M.4
Stahl, D.A.5
-
9
-
-
41149153310
-
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring
-
Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, et al. (2008) A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Proc Natl Acad Sci U S A 105: 2134-2139.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2134-2139
-
-
Hatzenpichler, R.1
Lebedeva, E.V.2
Spieck, E.3
Stoecker, K.4
Richter, A.5
-
10
-
-
78649703098
-
Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria
-
Park BJ, Park SJ, Yoon DN, Schouten S, Sinninghe Damste JS, et al. (2010) Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria. Appl Environ Microbiol 76: 7575-7587.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 7575-7587
-
-
Park, B.J.1
Park, S.J.2
Yoon, D.N.3
Schouten, S.4
Sinninghe Damste, J.S.5
-
11
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR, (2011) Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 6: e16626.
-
(2011)
PLoS One
, vol.6
-
-
Blainey, P.C.1
Mosier, A.C.2
Potanina, A.3
Francis, C.A.4
Quake, S.R.5
-
12
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
Tourna M, Stieglmeier M, Spang A, Konneke M, Schintlmeister A, et al. (2011) Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A 108: 8420-8425.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
Stieglmeier, M.2
Spang, A.3
Konneke, M.4
Schintlmeister, A.5
-
13
-
-
80053158633
-
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil
-
Lehtovirta-Morley LE, Stoecker K, Vilcinskas A, Prosser JI, Nicol GW, (2011) Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil. Proc Natl Acad Sci U S A 108: 15892-15897.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15892-15897
-
-
Lehtovirta-Morley, L.E.1
Stoecker, K.2
Vilcinskas, A.3
Prosser, J.I.4
Nicol, G.W.5
-
14
-
-
84861939476
-
Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil
-
Kim JG, Jung MY, Park SJ, Rijpstra WI, Sinninghe Damste JS, et al. (2012) Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ Microbiol.
-
(2012)
Environ Microbiol
-
-
Kim, J.G.1
Jung, M.Y.2
Park, S.J.3
Rijpstra, W.I.4
Sinninghe Damste, J.S.5
-
15
-
-
74149086631
-
Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment
-
Junier P, Molina V, Dorador C, Hadas O, Kim OS, et al. (2010) Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Appl Microbiol Biotechnol 85: 425-440.
-
(2010)
Appl Microbiol Biotechnol
, vol.85
, pp. 425-440
-
-
Junier, P.1
Molina, V.2
Dorador, C.3
Hadas, O.4
Kim, O.S.5
-
16
-
-
79955487255
-
Responses of aerobic and anaerobic ammonia/ammonium-oxidizing microorganisms to anthropogenic pollution in coastal marine environments
-
Cao H, Li M, Dang H, Gu JD, (2011) Responses of aerobic and anaerobic ammonia/ammonium-oxidizing microorganisms to anthropogenic pollution in coastal marine environments. Methods Enzymol 496: 35-62.
-
(2011)
Methods Enzymol
, vol.496
, pp. 35-62
-
-
Cao, H.1
Li, M.2
Dang, H.3
Gu, J.D.4
-
17
-
-
79959620844
-
Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning
-
Wessen E, Soderstrom M, Stenberg M, Bru D, Hellman M, et al. (2011) Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning. ISME J 5: 1213-1225.
-
(2011)
ISME J
, vol.5
, pp. 1213-1225
-
-
Wessen, E.1
Soderstrom, M.2
Stenberg, M.3
Bru, D.4
Hellman, M.5
-
18
-
-
68149112220
-
Environmental factors shaping the ecological niches of ammonia-oxidizing archaea
-
Erguder TH, Boon N, Wittebolle L, Marzorati M, Verstraete W, (2009) Environmental factors shaping the ecological niches of ammonia-oxidizing archaea. FEMS Microbiol Rev 33: 855-869.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 855-869
-
-
Erguder, T.H.1
Boon, N.2
Wittebolle, L.3
Marzorati, M.4
Verstraete, W.5
-
19
-
-
34547433545
-
Global patterns in bacterial diversity
-
Lozupone CA, Knight R, (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci U S A 104: 11436-11440.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 11436-11440
-
-
Lozupone, C.A.1
Knight, R.2
-
20
-
-
76349125984
-
Global ecological patterns in uncultured Archaea
-
Auguet JC, Barberan A, Casamayor EO, (2010) Global ecological patterns in uncultured Archaea. ISME J 4: 182-190.
-
(2010)
ISME J
, vol.4
, pp. 182-190
-
-
Auguet, J.C.1
Barberan, A.2
Casamayor, E.O.3
-
21
-
-
77951498193
-
Ecological and evolutionary factors underlying global and local assembly of denitrifier communities
-
Jones CM, Hallin S, (2010) Ecological and evolutionary factors underlying global and local assembly of denitrifier communities. ISME J 4: 633-641.
-
(2010)
ISME J
, vol.4
, pp. 633-641
-
-
Jones, C.M.1
Hallin, S.2
-
22
-
-
84867292352
-
Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers
-
Fernandez-Guerra A, Casamayor EO, (2012) Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers. PLoS One 7: e47330.
-
(2012)
PLoS One
, vol.7
-
-
Fernandez-Guerra, A.1
Casamayor, E.O.2
-
23
-
-
84874550637
-
Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat
-
Biller SJ, Mosier AC, Wells GF, Francis CA, (2012) Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat. Front Microbiol 3: 252.
-
(2012)
Front Microbiol
, vol.3
, pp. 252
-
-
Biller, S.J.1
Mosier, A.C.2
Wells, G.F.3
Francis, C.A.4
-
24
-
-
79953221862
-
Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes
-
Auguet JC, Nomokonova N, Camarero L, Casamayor EO, (2011) Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes. Appl Environ Microbiol 77: 1937-1945.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 1937-1945
-
-
Auguet, J.C.1
Nomokonova, N.2
Camarero, L.3
Casamayor, E.O.4
-
25
-
-
79959305731
-
Diversity and abundance of ammonia-oxidizing archaea in the Dongjiang River, China
-
Liu Z, Huang S, Sun G, Xu Z, Xu M, (2011) Diversity and abundance of ammonia-oxidizing archaea in the Dongjiang River, China. Microbiol Res 166: 337-345.
-
(2011)
Microbiol Res
, vol.166
, pp. 337-345
-
-
Liu, Z.1
Huang, S.2
Sun, G.3
Xu, Z.4
Xu, M.5
-
26
-
-
53949086905
-
High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study
-
Lliros M, Casamayor EO, Borrego C, (2008) High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study. FEMS Microbiol Ecol 66: 331-342.
-
(2008)
FEMS Microbiol Ecol
, vol.66
, pp. 331-342
-
-
Lliros, M.1
Casamayor, E.O.2
Borrego, C.3
-
27
-
-
77958592618
-
Vertical distribution of ammonia-oxidizing crenarchaeota and methanogens in the epipelagic waters of Lake Kivu (Rwanda-Democratic Republic of the Congo)
-
Lliros M, Gich F, Plasencia A, Auguet JC, Darchambeau F, et al. (2010) Vertical distribution of ammonia-oxidizing crenarchaeota and methanogens in the epipelagic waters of Lake Kivu (Rwanda-Democratic Republic of the Congo). Appl Environ Microbiol 76: 6853-6863.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 6853-6863
-
-
Lliros, M.1
Gich, F.2
Plasencia, A.3
Auguet, J.C.4
Darchambeau, F.5
-
28
-
-
78650364411
-
Abundance and diversity of archaeal ammonia oxidizers in a coastal groundwater system
-
Rogers DR, Casciotti KL, (2010) Abundance and diversity of archaeal ammonia oxidizers in a coastal groundwater system. Appl Environ Microbiol 76: 7938-7948.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 7938-7948
-
-
Rogers, D.R.1
Casciotti, K.L.2
-
29
-
-
67650492058
-
Ammonia-oxidizing bacteria and archaea in groundwater treatment and drinking water distribution systems
-
van der Wielen PW, Voost S, van der Kooij D, (2009) Ammonia-oxidizing bacteria and archaea in groundwater treatment and drinking water distribution systems. Appl Environ Microbiol 75: 4687-4695.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4687-4695
-
-
van der Wielen, P.W.1
Voost, S.2
van der Kooij, D.3
-
30
-
-
84856577796
-
amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
-
Pester M, Rattei T, Flechl S, Grongroft A, Richter A, et al. (2012) amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. Environ Microbiol 14: 525-539.
-
(2012)
Environ Microbiol
, vol.14
, pp. 525-539
-
-
Pester, M.1
Rattei, T.2
Flechl, S.3
Grongroft, A.4
Richter, A.5
-
31
-
-
52949134066
-
Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary
-
Mosier AC, Francis CA, (2008) Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ Microbiol 10: 3002-3016.
-
(2008)
Environ Microbiol
, vol.10
, pp. 3002-3016
-
-
Mosier, A.C.1
Francis, C.A.2
-
32
-
-
40949097432
-
Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary
-
Santoro AE, Francis CA, de Sieyes NR, Boehm AB, (2008) Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ Microbiol 10: 1068-1079.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1068-1079
-
-
Santoro, A.E.1
Francis, C.A.2
de Sieyes, N.R.3
Boehm, A.B.4
-
33
-
-
76649087327
-
Abundance of ammonia-oxidizing archaea and bacteria along an estuarine salinity gradient in relation to potential nitrification rates
-
Bernhard AE, Landry ZC, Blevins A, de la Torre JR, Giblin AE, et al. (2010) Abundance of ammonia-oxidizing archaea and bacteria along an estuarine salinity gradient in relation to potential nitrification rates. Appl Environ Microbiol 76: 1285-1289.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1285-1289
-
-
Bernhard, A.E.1
Landry, Z.C.2
Blevins, A.3
de la Torre, J.R.4
Giblin, A.E.5
-
34
-
-
33846134052
-
Communities of archaea and bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota
-
Weidler GW, Dornmayr-Pfaffenhuemer M, Gerbl FW, Heinen W, Stan-Lotter H, (2007) Communities of archaea and bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota. Appl Environ Microbiol 73: 259-270.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 259-270
-
-
Weidler, G.W.1
Dornmayr-Pfaffenhuemer, M.2
Gerbl, F.W.3
Heinen, W.4
Stan-Lotter, H.5
-
35
-
-
54449092101
-
Crenarchaeota and their role in the nitrogen cycle in a subsurface radioactive thermal spring in the Austrian Central Alps
-
Weidler GW, Gerbl FW, Stan-Lotter H, (2008) Crenarchaeota and their role in the nitrogen cycle in a subsurface radioactive thermal spring in the Austrian Central Alps. Appl Environ Microbiol 74: 5934-5942.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 5934-5942
-
-
Weidler, G.W.1
Gerbl, F.W.2
Stan-Lotter, H.3
-
36
-
-
54949087158
-
Global occurrence of archaeal amoA genes in terrestrial hot springs
-
Zhang CL, Ye Q, Huang Z, Li W, Chen J, et al. (2008) Global occurrence of archaeal amoA genes in terrestrial hot springs. Appl Environ Microbiol 74: 6417-6426.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 6417-6426
-
-
Zhang, C.L.1
Ye, Q.2
Huang, Z.3
Li, W.4
Chen, J.5
-
37
-
-
77954255056
-
RNA-based investigation of ammonia-oxidizing archaea in hot springs of Yunnan Province, China
-
Jiang H, Huang Q, Dong H, Wang P, Wang F, et al. (2010) RNA-based investigation of ammonia-oxidizing archaea in hot springs of Yunnan Province, China. Appl Environ Microbiol 76: 4538-4541.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4538-4541
-
-
Jiang, H.1
Huang, Q.2
Dong, H.3
Wang, P.4
Wang, F.5
-
38
-
-
34548532559
-
Separating the determinants of phylogenetic community structure
-
Helmus MR, Savage K, Diebel MW, Maxted JT, Ives AR, (2007) Separating the determinants of phylogenetic community structure. Ecol Lett 10: 917-925.
-
(2007)
Ecol Lett
, vol.10
, pp. 917-925
-
-
Helmus, M.R.1
Savage, K.2
Diebel, M.W.3
Maxted, J.T.4
Ives, A.R.5
-
39
-
-
69749086719
-
Infrequent marine-freshwater transitions in the microbial world
-
Logares R, Brate J, Bertilsson S, Clasen JL, Shalchian-Tabrizi K, et al. (2009) Infrequent marine-freshwater transitions in the microbial world. Trends Microbiol 17: 414-422.
-
(2009)
Trends Microbiol
, vol.17
, pp. 414-422
-
-
Logares, R.1
Brate, J.2
Bertilsson, S.3
Clasen, J.L.4
Shalchian-Tabrizi, K.5
-
40
-
-
52949137846
-
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
-
Nicol GW, Leininger S, Schleper C, Prosser JI, (2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10: 2966-2978.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2966-2978
-
-
Nicol, G.W.1
Leininger, S.2
Schleper, C.3
Prosser, J.I.4
-
41
-
-
84865332581
-
Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake
-
Auguet JC, Triado-Margarit X, Nomokonova N, Camarero L, Casamayor EO, (2012) Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake. ISME J.
-
(2012)
ISME J
-
-
Auguet, J.C.1
Triado-Margarit, X.2
Nomokonova, N.3
Camarero, L.4
Casamayor, E.O.5
-
42
-
-
78349282589
-
Ammonia-oxidising archaea-physiology, ecology and evolution
-
Schleper C, Nicol GW, (2010) Ammonia-oxidising archaea-physiology, ecology and evolution. Adv Microb Physiol 57: 1-41.
-
(2010)
Adv Microb Physiol
, vol.57
, pp. 1-41
-
-
Schleper, C.1
Nicol, G.W.2
-
43
-
-
77956256740
-
High diversity of ammonia-oxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific
-
Molina V, Belmar L, Ulloa O, (2010) High diversity of ammonia-oxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific. Environ Microbiol 12: 2450-2465.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2450-2465
-
-
Molina, V.1
Belmar, L.2
Ulloa, O.3
-
44
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, et al. (2010) Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci U S A 107: 8818-8823.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
de la Torre, J.R.2
Klotz, M.G.3
Urakawa, H.4
Pinel, N.5
-
45
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB, (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci U S A 102: 14683-14688.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
46
-
-
31444447130
-
The diversity and biogeography of soil bacterial communities
-
Fierer N, Jackson RB, (2006) The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci U S A 103: 626-631.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 626-631
-
-
Fierer, N.1
Jackson, R.B.2
-
47
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber CL, Hamady M, Knight R, Fierer N, (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5111-5120
-
-
Lauber, C.L.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
48
-
-
29144511306
-
Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization
-
Enwall K, Philippot L, Hallin S, (2005) Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization. Appl Environ Microbiol 71: 8335-8343.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8335-8343
-
-
Enwall, K.1
Philippot, L.2
Hallin, S.3
-
49
-
-
77749245789
-
Insights into the effect of soil pH on N(2)O and N(2) emissions and denitrifier community size and activity
-
Cuhel J, Simek M, Laughlin RJ, Bru D, Cheneby D, et al. (2010) Insights into the effect of soil pH on N(2)O and N(2) emissions and denitrifier community size and activity. Appl Environ Microbiol 76: 1870-1878.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1870-1878
-
-
Cuhel, J.1
Simek, M.2
Laughlin, R.J.3
Bru, D.4
Cheneby, D.5
-
50
-
-
84855518132
-
Niche specialization of terrestrial archaeal ammonia oxidizers
-
Gubry-Rangin C, Hai B, Quince C, Engel M, Thomson BC, et al. (2011) Niche specialization of terrestrial archaeal ammonia oxidizers. Proc Natl Acad Sci U S A 108: 21206-21211.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 21206-21211
-
-
Gubry-Rangin, C.1
Hai, B.2
Quince, C.3
Engel, M.4
Thomson, B.C.5
-
51
-
-
78649450690
-
Relevance of a crenarchaeotal subcluster related to Candidatus Nitrosopumilus maritimus to ammonia oxidation in the suboxic zone of the central Baltic Sea
-
Labrenz M, Sintes E, Toetzke F, Zumsteg A, Herndl GJ, et al. (2010) Relevance of a crenarchaeotal subcluster related to Candidatus Nitrosopumilus maritimus to ammonia oxidation in the suboxic zone of the central Baltic Sea. ISME J 4: 1496-1508.
-
(2010)
ISME J
, vol.4
, pp. 1496-1508
-
-
Labrenz, M.1
Sintes, E.2
Toetzke, F.3
Zumsteg, A.4
Herndl, G.J.5
-
52
-
-
0034701257
-
Phylogenetically patterned speciation rates and extinction risks change the loss of evolutionary history during extinctions
-
Heard SB, Mooers AO, (2000) Phylogenetically patterned speciation rates and extinction risks change the loss of evolutionary history during extinctions. Proc Biol Sci 267: 613-620.
-
(2000)
Proc Biol Sci
, vol.267
, pp. 613-620
-
-
Heard, S.B.1
Mooers, A.O.2
-
54
-
-
0034703844
-
Testing macro-evolutionary models using incomplete molecular phylogenies
-
Pybus OG, Harvey PH, (2000) Testing macro-evolutionary models using incomplete molecular phylogenies. Proc Biol Sci 267: 2267-2272.
-
(2000)
Proc Biol Sci
, vol.267
, pp. 2267-2272
-
-
Pybus, O.G.1
Harvey, P.H.2
-
55
-
-
2542431561
-
The rate and pattern of cladogenesis in microbes
-
Martin AP, Costello EK, Meyer AF, Nemergut DR, Schmidt SK, (2004) The rate and pattern of cladogenesis in microbes. Evolution 58: 946-955.
-
(2004)
Evolution
, vol.58
, pp. 946-955
-
-
Martin, A.P.1
Costello, E.K.2
Meyer, A.F.3
Nemergut, D.R.4
Schmidt, S.K.5
-
56
-
-
84859228145
-
Do patterns of bacterial diversity along salinity gradients differ from those observed for macroorganisms?
-
Wang J, Yang D, Zhang Y, Shen J, van der Gast C, et al. (2011) Do patterns of bacterial diversity along salinity gradients differ from those observed for macroorganisms? PLoS One 6: e27597.
-
(2011)
PLoS One
, vol.6
-
-
Wang, J.1
Yang, D.2
Zhang, Y.3
Shen, J.4
van der Gast, C.5
-
57
-
-
79954748699
-
Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota
-
Barberan A, Fernandez-Guerra A, Auguet JC, Galand PE, Casamayor EO, (2011) Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota. Mol Ecol 20: 1988-1996.
-
(2011)
Mol Ecol
, vol.20
, pp. 1988-1996
-
-
Barberan, A.1
Fernandez-Guerra, A.2
Auguet, J.C.3
Galand, P.E.4
Casamayor, E.O.5
-
58
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
59
-
-
68049142320
-
Multiple alignment of DNA sequences with MAFFT
-
In: Posada D, editor. New York, NY.: Springer
-
Katoh K, Asimenos G, Toh H (2009) Multiple alignment of DNA sequences with MAFFT. In: Posada D, editor. Bioinformatics for DNA sequence analysis. New York, NY.: Springer. pp. 39-64.
-
(2009)
Bioinformatics for DNA sequence analysis
, pp. 39-64
-
-
Katoh, K.1
Asimenos, G.2
Toh, H.3
-
60
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
61
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
Stamatakis A, Hoover P, Rougemont J, (2008) A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 57: 758-771.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
62
-
-
33845873289
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
-
Letunic I, Bork P, (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127-128.
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
63
-
-
73449128271
-
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C, Knight R, (2010) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
-
(2010)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
64
-
-
0026499429
-
Conservation evaluation and phylogenetic diversity
-
Faith DP, (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61: 1-10.
-
(1992)
Biol Conserv
, vol.61
, pp. 1-10
-
-
Faith, D.P.1
-
65
-
-
77954288795
-
Global phylogenetic community structure and beta-diversity patterns of surface bacterioplankton metacommunities
-
Barberan A, Casamayor EO, (2010) Global phylogenetic community structure and beta-diversity patterns of surface bacterioplankton metacommunities. Aquat Microb Ecol 59: 1-10.
-
(2010)
Aquat Microb Ecol
, vol.59
, pp. 1-10
-
-
Barberan, A.1
Casamayor, E.O.2
-
66
-
-
77951550586
-
Phylogenetic measures of biodiversity
-
Helmus MR, Bland TJ, Williams CK, Ives AR, (2007) Phylogenetic measures of biodiversity. Am Nat 169: 68-83.
-
(2007)
Am Nat
, vol.169
, pp. 68-83
-
-
Helmus, M.R.1
Bland, T.J.2
Williams, C.K.3
Ives, A.R.4
-
67
-
-
77953882250
-
Picante: R tools for integrating phylogenies and ecology
-
Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, et al. (2010) Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26: 1463-1464.
-
(2010)
Bioinformatics
, vol.26
, pp. 1463-1464
-
-
Kembel, S.W.1
Cowan, P.D.2
Helmus, M.R.3
Cornwell, W.K.4
Morlon, H.5
-
68
-
-
0036135468
-
Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach
-
Sanderson MJ, (2002) Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol Biol Evol 19: 101-109.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 101-109
-
-
Sanderson, M.J.1
-
69
-
-
1042304216
-
APE: Analyses of Phylogenetics and Evolution in R language
-
Paradis E, Claude J, Strimmer K, (2004) APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20: 289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
|