Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities

Aquatic Microbial Ecology

Volumn 59, Issue 1, 2010, Pages 1-10

  Barberán, Albert ^a   Casamayor, Emilio O ^a  

^a CENTRE D ESTUDIS AVANÇATS DE BLANES CEAB CSIC   (Spain)

Author keywords

16S rRNA gene; Bacterioplankton; Biogeography; Community assembly; Community ecology; Global distribution; Metacommunity; Phylogeny

Indexed keywords

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BETAPROTEOBACTERIA; CYANOBACTERIA; GAMMAPROTEOBACTERIA; SPHINGOBACTERIA;

EID: 77954288795     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01389     Document Type: Article

References (46)

1. Agogué H, Casamayor EO, Bourrain M, Obernosterer I, Joux F, Herndl GJ, Lebaron P (2005) A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microbiol Ecol 54:269-280
2. Auguet JC, Barberán A, Casamayor EO (2010) Global ecological patterns in uncultured Archaea. ISME J 4:182-190
3. Baas-Becking LGM (1934) Geobiologie, of inleiding tot de milieukunde, Serie 18/19. Van Stockum's Gravenhange, The Hague
4. Bouvier TC, del Giorgio PA (2002) Compositional changes in freeliving bacterial communities along a salinity gradient in two temperate studies. Limnol Oceanogr 47:453-470
5. Bryant JA, Lamanna C, Morlon HLN, Kerkhoff AJ, Enquist BJ, Green JL (2008) Microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity. Proc Natl Acad Sci USA 105:11505-11511
6. Casamayor EO, Calderón-Paz JI, Pedrós-Alió C (2000) 5S rRNA fingerprints of marine bacteria, halophilic archaea and natural prokaryotic assemblages along a salinity gradient. FEMS Microbiol Ecol 34:113-119
7. Casamayor EO, Pedrós-Alió C, Muyzer G, Amann R (2002) Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations. Appl Environ Microbiol 68:1706-1714
8. Cottenie K (2005) Integrating environmental and spatial processes in ecological community dynamics. Ecol Lett 8:1175-1182
9. Cottenie K, De Meester L (2004) Metacommunity structure: synergy of biotic interactions as selective agents and dispersal as fuel. Ecology 85:114-119
10. Demergasso C, Casamayor EO, Chong G, Galleguillos P, Escudero L, Pedrós-Alió C (2004) Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, northern Chile. FEMS Microbiol Ecol 48:57-69
11. Demergasso C, Escudero L, Casamayor EO, Chong G, Balagué V, Pedrós-Alió C (2008) Novelty and spatio-temporal heterogeneity in the bacterial diversity of hypersaline Lake Tebenquiche (Salar de Atacama). Extremophiles 12:491-504
12. Dolan JR (2006) Microbial biogeography? J Biogeogr 33:199-200
13. Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61:1-10
14. Fenchel T (2003) Biogeography for bacteria. Science 301:925-926
15. Fierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103:626-631
16. Fuchs BM, Spring S, Teeling H, Quast C and others (2007) Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc Natl Acad Sci USA 104:2891-2896
17. Fuhrman JA, Hewson I, Schwalbach MS, Steele JA, Brown MV, Naeem S (2006) Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci USA 103:13104-13109
18. Fuhrman JA, Steele JA, Hewson I, Schwalbach MS, Brown MV, Green JL, Brown JH (2008) A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci USA 105:7774-7778
19. Galand PE, Casamayor EO, Kirchman DL, Lovejoy C (2009) Ecology of the rare microbial biosphere of the Arctic Ocean. PNAS 106:22427-22432
20. Galand PE, Potvin M, Casamayor EO, Lovejoy C (2010) Hydrography shapes bacterial biogeography of the deep Arctic Ocean. ISME J, doi:10.1038/ismej.2009. 134
21. Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721-3726
22. Hervàs A, Camarero L, Reche I, Casamayor EO (2009) Viability and potential for immigration of airborne bacteria from Africa that reach high mountain lakes in Europe. Environ Microbiol 11:1612-1623
23. Horner-Devine MC, Bohannan BJM (2006) Phylogenetic clustering and overdispersion in bacterial communities. Ecology 87:100-108
24. Horner-Devine MC, Lage M, Hughes JB, Bohannan BJM (2004) A taxa-area relationship for bacteria. Nature 432:750-753
25. Horner-Devine MC, Silver JM, Leibold MA, Bohannan BJM and others (2007) A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology 88:1345-1353
26. Hubbell SP (2001) The unified neutral theory of biodiversity and biogeography. Princeton University Press, Princeton, NJ
27. Hutchinson GE (1961) The paradox of the plankton. Am Nat 95:137-145
28. Kent AD, Yannarell AC, Rusak JA, Triplett EW, Mcmahon KD (2007) Synchrony in aquatic microbial community dynamics. ISME J 1:38-47
29. Langenheder S, Ragnarsson H (2007) The role of environmental and spatial factors for the composition of aquatic bacterial communities. Ecology 88:2154-2161
30. Leibold MA, Holyoak M, Mouquet N, Amarasekare P and others (2004) The metacommunity concept: a framework for multi-scale community ecology. Ecol Lett 7:601-613
31. Levin SA (1992) The problem of pattern and scale in ecology. Ecology 73:1943-1967
32. Lindström E, Logue JB (2008) Biogeography of bacterioplankton in inland waters. Freshw Rev 1:99-114
33. Lozupone CA, Knight R (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci USA 104:11436-11440
34. Newton RJ, Jones SE, Helmus MR, Mcmahon KD (2007) Phylogenetic ecology of the freshwater Actinobacteria acI lineage. Appl Environ Microbiol 73:7169-7176
35. Ng ISY, Carr CM, Cottenie K (2009) Hierarchical zooplankton metacommunities: distinguishing between high and limiting dispersal mechanisms. Hydrobiologia 619:133-143
36. Papke RT, Ward DM (2004) The importance of physical isolation to microbial diversification. FEMS Microbiol Ecol 48:293-303
37. Pommier T, Canback B, Riemann L, Bostrom KH and others (2007) Global patterns of diversity and community structure in marine bacterioplankton. Mol Ecol 16:867-880
38. Reche I, Pulido-Villena E, Morales-Baquero R, Casamayor EO (2005) Does ecosystem size determine aquatic bacterial richness? Ecology 86:1715-1722
39. Reche I, Pulido-Villena E, Morales-Baquero R, Casamayor EO (2007) Does ecosystem size determine aquatic bacterial richness? Reply. Ecology 88:253-255
40. Rosselló-Mora R, Amann R (2001) The species concept for prokaryotes. FEMS Microbiol Rev 25:39-67
41. Sommaruga R, Casamayor EO (2009) Bacterial 'cosmopolitanism' and importance of local environmental factors for community composition in remote high-altitude lakes. Freshw Biol 54:994-1005
42. Van der Gucht K, Cottenie K, Muylaert K, Vloemans N and others (2007) The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales. Proc Natl Acad Sci USA 104:20404-20409
43. Von Mering C, Hugenholtz P, Raes J, Tringe SG and others (2007) Quantitative phylogenetic assessment of microbial communities in diverse environments. Science 315:1126-1130
44. Webb CO (2000) Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. Am Nat 156:145-155
45. Webb CO, Ackerly DD, Mcpeek MA, Donoghue MJ (2002) Phylogenies and community ecology. Annu Rev Ecol Syst 33:475-505
46. Whitaker RJ, Grogan DW, Taylor JW (2003) Geographic barriers isolate endemic populations of hyperthermophilic Archaea. Science 301:976-978