-
1
-
-
3242883431
-
PRED-TMBB: A web server for predicting the topology of beta-barrel outer membrane proteins
-
Bagos, P.G. et al. (2004) PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Nucleic Acids Res., 32, W400-W404.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bagos, P.G.1
-
2
-
-
13244259253
-
Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method
-
Bagos, P.G. et al. (2005) Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinformatics, 6, 1-13.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 1-13
-
-
Bagos, P.G.1
-
3
-
-
3042678854
-
Predicting transmembrane beta-barrels in proteomes
-
Bigelow, H.R. et al. (2004) Predicting transmembrane beta-barrels in proteomes. Nucleic Acids Res., 32, 2566-2577.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2566-2577
-
-
Bigelow, H.R.1
-
4
-
-
0037569526
-
Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria
-
Casadio, R. et al. (2003) Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Protein Sci., 11, 1158-1168.
-
(2003)
Protein Sci
, vol.11
, pp. 1158-1168
-
-
Casadio, R.1
-
5
-
-
70749106492
-
Grammatical-restrained hidden conditional random fields for bioinformatics applications
-
Fariselli, P. et al. (2009) Grammatical-restrained hidden conditional random fields for bioinformatics applications. Algorithms Mol. Biol., 22, 4-13.
-
(2009)
Algorithms Mol. Biol
, vol.22
, pp. 4-13
-
-
Fariselli, P.1
-
6
-
-
77955411469
-
A highly accurate statistical approach for the prediction of transmembrane-barrels
-
Freeman, T.C., Jr and Wimley, W.C. (2010) A highly accurate statistical approach for the prediction of transmembrane-barrels. Bioinformatics, 26, 1965-1974.
-
(2010)
Bioinformatics
, vol.26
, pp. 1965-1974
-
-
Freeman Jr., T.C.1
Wimley, W.C.2
-
7
-
-
33646780174
-
Discrimination of outer membrane proteins using machine learning algorithms
-
Gromiha, M.M. and Suwa, M. (2006) Discrimination of outer membrane proteins using machine learning algorithms. Proteins, 63, 1031-1037.
-
(2006)
Proteins
, vol.63
, pp. 1031-1037
-
-
Gromiha, M.M.1
Suwa, M.2
-
8
-
-
84857183332
-
BOCTOPUS: Improved topology prediction of transmembrane-barrel proteins
-
Hayat, S. and Elofsson, A. (2012) BOCTOPUS: improved topology prediction of transmembrane barrel proteins. Bioinformatics, 28, 516-522.
-
(2012)
Bioinformatics
, vol.28
, pp. 516-522
-
-
Hayat, S.1
Elofsson, A.2
-
9
-
-
33745903481
-
Extreme learning machine: Theory and applications
-
Huang, G.B. et al. (2006) Extreme learning machine: theory and applications. Neurocomputing, 70, 489-501.
-
(2006)
Neurocomputing
, vol.70
, pp. 489-501
-
-
Huang, G.B.1
-
10
-
-
33644861214
-
OPM: Orientations of proteins in membranes database
-
Lomize, M. et al. (2006) OPM: orientations of proteins in membranes database. Bioinformatics, 22, 623-625.
-
(2006)
Bioinformatics
, vol.22
, pp. 623-625
-
-
Lomize, M.1
-
11
-
-
4243671284
-
A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins
-
Martelli, P.L. et al. (2002) A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. Bioinformatics, 18, S46-S53.
-
(2002)
Bioinformatics
, vol.18
-
-
Martelli, P.L.1
-
12
-
-
80053937952
-
SCLpred: Protein subcellular localization prediction by N-to-1 neural networks
-
Mooney, Y. et al. (2011) SCLpred: protein subcellular localization prediction by N-to-1 neural networks. Bioinformatics, 27, 2812-2819.
-
(2011)
Bioinformatics
, vol.27
, pp. 2812-2819
-
-
Mooney, Y.1
-
13
-
-
67849103758
-
Hhomp: Prediction and classification of outer membrane proteins
-
Remmert, M. et al. (2009) Hhomp: prediction and classification of outer membrane proteins. Nucleic Acids Res., 37, W446-W451.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Remmert, M.1
-
14
-
-
80755169550
-
Improving the detection of transmembrane-barrel chains with N-to-1 Extreme Learning Machines
-
Savojardo, C. et al. (2011) Improving the detection of transmembrane-barrel chains with N-to-1 Extreme Learning Machines. Bioinformatics, 27, 3123-3128.
-
(2011)
Bioinformatics
, vol.27
, pp. 3123-3128
-
-
Savojardo, C.1
-
15
-
-
0033932639
-
Barrel membrane proteins
-
Schulz, G.E. (2000) Barrel membrane proteins. Curr. Opin. Struct. Biol., 10, 443-447.
-
(2000)
Curr. Opin. Struct. Biol
, vol.10
, pp. 443-447
-
-
Schulz, G.E.1
-
16
-
-
13444280419
-
PDB TM: Selection and membrane localization of transmembrane proteins in the protein data bank
-
Tusnady, G. et al. (2005) PDB TM: selection and membrane localization of transmembrane proteins in the protein data bank. Nucleic Acids Res., 33, D275-D278.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Tusnady, G.1
|