메뉴 건너뛰기




Volumn 27, Issue 22, 2011, Pages 3123-3128

Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 80755169550     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr549     Document Type: Article
Times cited : (21)

References (24)
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 3
    • 3242883431 scopus 로고    scopus 로고
    • PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins
    • Bagos,P.G. et al. (2004) PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Nucleic Acids Res., 32, W400-W404.
    • (2004) Nucleic Acids Res , vol.32
    • Bagos, P.G.1
  • 4
    • 13244259253 scopus 로고    scopus 로고
    • Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method
    • Bagos,P.G. et al., (2005) Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinformatics, 6, 1-13.
    • (2005) BMC Bioinformatics , vol.6 , pp. 1-13
    • Bagos, P.G.1
  • 5
    • 3242879514 scopus 로고    scopus 로고
    • BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria
    • Berven,F.S. et al. (2004) BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Nucleic Acids Res., 32, W394-W399.
    • (2004) Nucleic Acids Res , vol.32
    • Berven, F.S.1
  • 6
    • 3042678854 scopus 로고    scopus 로고
    • Predicting transmembrane beta-barrels in proteomes
    • Bigelow,H.R. et al. (2004) Predicting transmembrane beta-barrels in proteomes. Nucleic Acids Res., 32, 2566-2577.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2566-2577
    • Bigelow, H.R.1
  • 7
    • 0037569526 scopus 로고    scopus 로고
    • Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria
    • Casadio,R. et al. (2003) Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Protein. Sci., 11, 1158-1168.
    • (2003) Protein. Sci. , vol.11 , pp. 1158-1168
    • Casadio, R.1
  • 8
    • 70749106492 scopus 로고    scopus 로고
    • Grammatical-restrained hidden conditional random fields for bioinformatics applications
    • Fariselli,P. et al. (2009) Grammatical-restrained hidden conditional random fields for bioinformatics applications. Algorithms Mol. Biol., 22, 4-13.
    • (2009) Algorithms Mol. Biol. , vol.22 , pp. 4-13
    • Fariselli, P.1
  • 9
    • 77955411469 scopus 로고    scopus 로고
    • A highly accurate statistical approach for the prediction of transmembrane β-barrels
    • Freeman,T.C. and Wimley,W.C. (2010) A highly accurate statistical approach for the prediction of transmembrane β-barrels. Bioinformatics, 26, 1965-1974.
    • (2010) Bioinformatics , vol.26 , pp. 1965-1974
    • Freeman, T.C.1    Wimley, W.C.2
  • 10
    • 33646780174 scopus 로고    scopus 로고
    • Discrimination of outer membrane proteins using machine learning algorithms
    • Gromiha,M.M. and Suwa,M. (2006) Discrimination of outer membrane proteins using machine learning algorithms. Proteins, 63, 1031-1037.
    • (2006) Proteins , vol.63 , pp. 1031-1037
    • Gromiha, M.M.1    Suwa, M.2
  • 11
    • 0037361264 scopus 로고    scopus 로고
    • Learning capability and storage capacity of two hidden-layer feedforward networks
    • Huang,G.B. (2003) Learning capability and storage capacity of two hidden-layer feedforward networks, IEEE T. Neural Networ., 14, 274-281.
    • (2003) IEEE T. Neural Networ. , vol.14 , pp. 274-281
    • Huang, G.B.1
  • 12
    • 33745903481 scopus 로고    scopus 로고
    • Extreme learning machine: theory and applications
    • Huang,G.B. et al. (2006a) Extreme learning machine: theory and applications. Neurocomputing, 70, 489-501.
    • (2006) Neurocomputing , vol.70 , pp. 489-501
    • Huang, G.B.1
  • 13
    • 33745918399 scopus 로고    scopus 로고
    • Universal approximation using incremental constructive feedforward networks with random hidden nodes
    • Huang,G.B. et al. (2006b) Universal approximation using incremental constructive feedforward networks with random hidden nodes. IEEE T. Neural Networ., 17, 879-892.
    • (2006) IEEE T. Neural Networ. , vol.17 , pp. 879-892
    • Huang, G.B.1
  • 14
    • 34548158996 scopus 로고    scopus 로고
    • Convex incremental extreme learning machine
    • Huang,G.B. and Chen, L. (2007) Convex incremental extreme learning machine. Neurocomputing, 70, 3056-3062.
    • (2007) Neurocomputing , vol.70 , pp. 3056-3062
    • Huang, G.B.1    Chen, L.2
  • 15
    • 56549090053 scopus 로고    scopus 로고
    • Enhanced random search based incremental extreme learning machine
    • Huang,G.B. and Chen, L. (2008) Enhanced random search based incremental extreme learning machine. Neurocomputing, 71, 3460-3468.
    • (2008) Neurocomputing , vol.71 , pp. 3460-3468
    • Huang, G.B.1    Chen, L.2
  • 16
    • 45549108281 scopus 로고    scopus 로고
    • A method for discovering transmembrane β-barrel proteins in Gram-negative bacterial proteomes
    • Hu,J. and Yan,C. (2008) A method for discovering transmembrane β-barrel proteins in Gram-negative bacterial proteomes. Comput. Biol. Chem., 32, 298-301.
    • (2008) Comput. Biol. Chem. , vol.32 , pp. 298-301
    • Hu, J.1    Yan, C.2
  • 17
    • 78649492473 scopus 로고    scopus 로고
    • Optimization method based extreme learning machine for classification
    • Huang,G.B. et al. (2010) Optimization method based extreme learning machine for classification, Neurocomputing, 74, 155-163.
    • (2010) Neurocomputing , vol.74 , pp. 155-163
    • Huang, G.B.1
  • 18
    • 4243671284 scopus 로고    scopus 로고
    • A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins
    • Martelli,P.L. et al. (2002) A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. Bioinformatics, 18, S46-S53.
    • (2002) Bioinformatics , vol.18
    • Martelli, P.L.1
  • 19
    • 80051677962 scopus 로고    scopus 로고
    • De novo protein subcellular localization prediction by N-to-1 neural networks
    • Lisboa,P.J. and Rizzo,R. (eds), LNCS 6685, Springer
    • Mooney,Y. et al. (2011) De novo protein subcellular localization prediction by N-to-1 neural networks, In Lisboa,P.J. and Rizzo,R. (eds) Computational Intelligence Methods for Bioinformatics and Biostatistics. LNCS 6685, Springer, p. 31.
    • (2011) Computational Intelligence Methods for Bioinformatics and Biostatistics , pp. 31
    • Mooney, Y.1
  • 20
    • 43249097732 scopus 로고    scopus 로고
    • TMBETADISC-RBF: discrimination of β-barrel membrane proteins using RBF networks and PSSM profiles
    • Ou,Y.Y. et al. (2008) TMBETADISC-RBF: discrimination of β-barrel membrane proteins using RBF networks and PSSM profiles. Comput. Biol. Chem., 32, 227-231.
    • (2008) Comput. Biol. Chem. , vol.32 , pp. 227-231
    • Ou, Y.Y.1
  • 21
    • 67849103758 scopus 로고    scopus 로고
    • Hhomp: prediction and classification of outer membrane proteins
    • Remmert,M. et al. (2009) Hhomp: prediction and classification of outer membrane proteins. Nucleic Acids Res., 37, W446-W451
    • (2009) Nucleic Acids Res , vol.37
    • Remmert, M.1
  • 22
    • 0036147641 scopus 로고    scopus 로고
    • Toward genomic identification of β-barrel membrane proteins: composition and architecture of known structures
    • Wimley,W.C. (2002) Toward genomic identification of β-barrel membrane proteins: composition and architecture of known structures. Protein Sci., 11, 301-312.
    • (2002) Protein Sci , vol.11 , pp. 301-312
    • Wimley, W.C.1
  • 23
    • 0041428149 scopus 로고    scopus 로고
    • The versatile beta-barrel membrane protein
    • Wimley,W.C. (2003). The versatile beta-barrel membrane protein. Curr. Opin. Struct. Biol., 13, 404-411.
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 404-411
    • Wimley, W.C.1
  • 24
    • 0033932639 scopus 로고    scopus 로고
    • β-Barrel membrane proteins
    • Schulz,G.E. (2000) β-Barrel membrane proteins. Curr. Opin. Struct. Biol., 10, 443-447.
    • (2000) Curr. Opin. Struct. Biol. , vol.10 , pp. 443-447
    • Schulz, G.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.