메뉴 건너뛰기




Volumn 523, Issue , 2013, Pages 327-349

Engineering and analysis of peptide-recognition domain specificities by phage display and deep sequencing

Author keywords

Deep sequencing; Directed evolution; Peptide recognition domain; Phage display; Protein engineering; Specificity

Indexed keywords

ANTIBODY CONJUGATE; BETA LACTAMASE; COAT PROTEIN; DNA DIRECTED DNA POLYMERASE BETA; DNA FRAGMENT; HETERODUPLEX; OLIGONUCLEOTIDE; PEPTIDES AND PROTEINS; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; POLYNUCLEOTIDE 5' HYDROXYL KINASE; RECOMBINANT PROTEIN; SINGLE STRANDED DNA; TAQ POLYMERASE;

EID: 84874087755     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-394292-0.00015-1     Document Type: Chapter
Times cited : (30)

References (18)
  • 2
    • 77956544553 scopus 로고    scopus 로고
    • Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing
    • A. Ernst, D. Gfeller, Z. Kan, S. Seshagiri, P.M. Kim, and G.D. Bader Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing Molecular BioSystems 6 2010 1782 1790
    • (2010) Molecular BioSystems , vol.6 , pp. 1782-1790
    • Ernst, A.1    Gfeller, D.2    Kan, Z.3    Seshagiri, S.4    Kim, P.M.5    Bader, G.D.6
  • 4
    • 0034647505 scopus 로고    scopus 로고
    • Analysis of PDZ domain-ligand interactions using carboxyl-terminal phage display
    • DOI 10.1074/jbc.275.28.21486
    • G. Fuh, M.T. Pisabarro, Y. Li, C. Quan, L.A. Lasky, and S.S. Sidhu Analysis of PDZ domain-ligand interactions using carboxyl-terminal phage display The Journal of Biological Chemistry 275 2000 21486 21491 (Pubitemid 30481852)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.28 , pp. 21486-21491
    • Fuh, G.1    Pisabarro, M.T.2    Li, Y.3    Quan, C.4    Lasky, L.A.5    Sidhu, S.S.6
  • 5
    • 2942716977 scopus 로고    scopus 로고
    • Comprehensive mutational analysis of the M13 major coat protein: Improved scaffolds for C-terminal phage display
    • DOI 10.1016/j.jmb.2004.04.060, PII S0022283604005236
    • H.A. Held, and S.S. Sidhu Comprehensive mutational analysis of the M13 major coat protein: Improved scaffolds for C-terminal phage display Journal of Molecular Biology 340 2004 587 597 (Pubitemid 38798002)
    • (2004) Journal of Molecular Biology , vol.340 , Issue.3 , pp. 587-597
    • Held, H.A.1    Sidhu, S.S.2
  • 6
    • 84859303311 scopus 로고    scopus 로고
    • MUSI: An integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets
    • T. Kim, M.S. Tyndel, H. Huang, S.S. Sidhu, G.D. Bader, and D. Gfeller MUSI: An integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets Nucleic Acids Research 40 2012 e47
    • (2012) Nucleic Acids Research , vol.40 , pp. 47
    • Kim, T.1    Tyndel, M.S.2    Huang, H.3    Sidhu, S.S.4    Bader, G.D.5    Gfeller, D.6
  • 7
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • T.A. Kunkel, J.D. Roberts, and R.A. Zakour Rapid and efficient site-specific mutagenesis without phenotypic selection Methods in Enzymology 154 1987 367 382
    • (1987) Methods in Enzymology , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 8
    • 0037453510 scopus 로고    scopus 로고
    • Assembly of cell regulatory systems through protein interaction domains
    • DOI 10.1126/science.1083653
    • T. Pawson Assembly of cell regulatory systems through protein interaction domains Science 300 2003 445 452 (Pubitemid 36444318)
    • (2003) Science , vol.300 , Issue.5618 , pp. 445-452
    • Pawson, T.1    Nash, P.2
  • 10
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • T.D. Schneider, and R.M. Stephens Sequence logos: A new way to display consensus sequences Nucleic Acids Research 18 1990 6097 6100
    • (1990) Nucleic Acids Research , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 12
    • 0037470140 scopus 로고    scopus 로고
    • Origins of PDZ Domain Ligand Specificity. Structure determination and mutagenesis of the erbin PDZ domain
    • N.J. Skelton Origins of PDZ Domain Ligand Specificity. Structure determination and mutagenesis of the erbin PDZ domain The Journal of Biological Chemistry 278 2002 7645 7654
    • (2002) The Journal of Biological Chemistry , vol.278 , pp. 7645-7654
    • Skelton, N.J.1
  • 15
    • 14844294424 scopus 로고    scopus 로고
    • Protein production by auto-induction in high density shaking cultures
    • F.W. Studier Protein production by auto-induction in high density shaking cultures Protein Expression and Purification 41 2005 207 234
    • (2005) Protein Expression and Purification , vol.41 , pp. 207-234
    • Studier, F.W.1
  • 16
    • 34250748507 scopus 로고    scopus 로고
    • Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries
    • DOI 10.1038/nprot.2007.151, PII NPROT.2007.151
    • R. Tonikian, Y. Zhang, C. Boone, and S.S. Sidhu Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries Nature Protocols 2 2007 1368 1386 (Pubitemid 46952319)
    • (2007) Nature Protocols , vol.2 , Issue.6 , pp. 1368-1386
    • Tonikian, R.1    Zhang, Y.2    Boone, C.3    Sidhu, S.S.4
  • 18
    • 41549107019 scopus 로고    scopus 로고
    • A method for generating sticky-end PCR products which facilitates unidirectional cloning and the one-step assembly of complex DNA constructs
    • A. Walker, J. Taylor, D. Rowe, and D. Summers A method for generating sticky-end PCR products which facilitates unidirectional cloning and the one-step assembly of complex DNA constructs Plasmid 59 2008 155 162
    • (2008) Plasmid , vol.59 , pp. 155-162
    • Walker, A.1    Taylor, J.2    Rowe, D.3    Summers, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.