메뉴 건너뛰기




Volumn 42, Issue 4, 2012, Pages 307-320

DNA barcoding reveals micro-evolutionary changes and river system-level phylogeographic resolution of African silver catfish, Schilbe intermedius (Actinopterygii: Siluriformes: Schilbeidae) from seven populations across different African river systems

Author keywords

Adaptation; DNA barcode; Population genetic differentiation; Species delimitation

Indexed keywords

ACTINOPTERYGII; ANIMALIA; PISCES; SCHILBE INTERMEDIUS; SCHILBEIDAE; SILURIFORMES;

EID: 84873881831     PISSN: 01371592     EISSN: 17341515     Source Type: Journal    
DOI: 10.3750/AIP2012.42.4.04     Document Type: Article
Times cited : (23)

References (65)
  • 1
    • 84987398270 scopus 로고
    • Protein variation in Schilbe mystus (L.) and Eutropius niloticus (Rüppel) (Pisces siluriformes) in the Volta Basin of Ghana, West Africa
    • DOI: 10.1111/j.1365-2109.1988.tb00330.x
    • Abban E.K., Skibinski D.O.F. 1988. Protein variation in Schilbe mystus (L.) and Eutropius niloticus (Rüppel) (Pisces siluriformes) in the Volta Basin of Ghana, West Africa. Aquaculture Research 19 (1): 25-37. DOI: 10.1111/j.1365-2109.1988.tb00330.x
    • (1988) Aquaculture Research , vol.19 , Issue.1 , pp. 25-37
    • Abban, E.K.1    Skibinski, D.O.F.2
  • 2
    • 33845381928 scopus 로고    scopus 로고
    • The posterior and the prior in Bayesian phylogenetics
    • DOI: 10.1146/annurev.ecolsys.37.091305.110021
    • Alfaro M.E., Holder M.T. 2006. The posterior and the prior in Bayesian phylogenetics. Annual Review of Ecology, Evolution, and Systematics 37: 19-42. DOI: 10.1146/annurev.ecolsys.37.091305.110021
    • (2006) Annual Review of Ecology, Evolution, and Systematics , vol.37 , pp. 19-42
    • Alfaro, M.E.1    Holder, M.T.2
  • 4
    • 0002095181 scopus 로고
    • The fish fauna of the Zambezi River System
    • Bell-Cross G. 1972. The fish fauna of the Zambezi River System. Arnoldia (Rhodesia) 5 (29) 1-19.
    • (1972) Arnoldia (Rhodesia) , vol.5 , Issue.29 , pp. 1-19
    • Bell-Cross, G.1
  • 5
    • 0004072526 scopus 로고
    • Trustees of the National Museums and Monuments of Zimbabwe, Harare
    • Bell-Cross G., Minshull J.L. 1988. The fishes of Zimbabwe. Trustees of the National Museums and Monuments of Zimbabwe, Harare.
    • (1988) The fishes of Zimbabwe
    • Bell-Cross, G.1    Minshull, J.L.2
  • 7
    • 0001011081 scopus 로고
    • Turnover rates in insular biogeography: Effect of immigration on extinction
    • DOI: 10.2307/1935620
    • Brown J.H., Kodric-Brown A. 1977. Turnover rates in insular biogeography: Effect of immigration on extinction. Ecology 58 (2): 445-449. DOI: 10.2307/1935620
    • (1977) Ecology , vol.58 , Issue.2 , pp. 445-449
    • Brown, J.H.1    Kodric-Brown, A.2
  • 8
    • 84859563653 scopus 로고    scopus 로고
    • Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding
    • DOI: 10.1111/j.1755-0998.2011.03108.x
    • Brown S.D.J., Collins R.A., Boyer S., Lefort M.-C., Malumbres-Olarte J., Vink C.J., Cruickshank R.H. 2012. Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding. Molecular Ecology Resources 12 (3): 562-565. DOI: 10.1111/j.1755-0998.2011.03108.x
    • (2012) Molecular Ecology Resources , vol.12 , Issue.3 , pp. 562-565
    • Brown, S.D.J.1    Collins, R.A.2    Boyer, S.3    Lefort, M.-C.4    Malumbres-Olarte, J.5    Vink, C.J.6    Cruickshank, R.H.7
  • 9
    • 0033805658 scopus 로고    scopus 로고
    • Apparent changes in the trophic composition of wild marine harvest: The perspective from FAO capture database
    • Caddy J., Garibaldi L. 2000. Apparent changes in the trophic composition of wild marine harvest: The perspective from FAO capture database. Ocean and Coastal Management 43: 615-655.
    • (2000) Ocean and Coastal Management , vol.43 , pp. 615-655
    • Caddy, J.1    Garibaldi, L.2
  • 11
    • 0345377778 scopus 로고
    • Preliminary data of a systematic revision of the African species of the family Schilbeidae (Pisces, Siluriformes)
    • De Vos L. 1984. Preliminary data of a systematic revision of the African species of the family Schilbeidae (Pisces, Siluriformes). Revue de Zoologie Africaine 98: 424-433.
    • (1984) Revue de Zoologie Africaine , vol.98 , pp. 424-433
    • de Vos, L.1
  • 12
    • 0011216247 scopus 로고
    • Etude systématique et morphologique du genre Eutropius en Afrique de L'ouest (Pisces, Schilbeidae)
    • De Vos L., Leveque C. 1983. Etude systématique et morphologique du genre Eutropius en Afrique de L'ouest (Pisces, Schilbeidae). Revue de Zoologie Africaine 97 (3): 469-532.
    • (1983) Revue de Zoologie Africaine , vol.97 , Issue.3 , pp. 469-532
    • de Vos, L.1    Leveque, C.2
  • 14
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI: 10.1093/nar/gkh340
    • Edgar R.C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32 (5): 1792-1797. DOI: 10.1093/nar/gkh340
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 16
    • 0037259888 scopus 로고    scopus 로고
    • Ecosystem-dependent adaptive radiation of picocyanobacteria inferred from 16S rRNA and ITS-1 sequences analysis
    • DOI: 10.1099/mic.0.25475-0
    • Ernst A., Becker S., Wollenzien U.I.A., Postius C. 2003. Ecosystem-dependent adaptive radiation of picocyanobacteria inferred from 16S rRNA and ITS-1 sequences analysis. Microbiology 149 (1): 217-228. DOI: 10.1099/mic.0.25475-0
    • (2003) Microbiology , vol.149 , Issue.1 , pp. 217-228
    • Ernst, A.1    Becker, S.2    Wollenzien, U.I.A.3    Postius, C.4
  • 17
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • DOI: 10.1016/0006-3207(92)91201-3
    • Faith D.P. 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation 61 (1): 1-10. DOI: 10.1016/0006-3207(92)91201-3
    • (1992) Biological Conservation , vol.61 , Issue.1 , pp. 1-10
    • Faith, D.P.1
  • 18
    • 84959747425 scopus 로고
    • Towards defining the course of evolution: Minimum change for a specific tree topology
    • Fitch W.M. 1971. Towards defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20 (4): 406-416.
    • (1971) Systematic Zoology , vol.20 , Issue.4 , pp. 406-416
    • Fitch, W.M.1
  • 22
    • 0003146144 scopus 로고
    • Evolutionary responses of plants to global change
    • In: Kareiva P.M., Kingsolver J.G., Huey R.B. (eds.), Sinauer, Sunderland, MA, USA
    • Geber M.A., Dawson T.E. 1993. Evolutionary responses of plants to global change. Pp. 179-197. In: Kareiva P.M., Kingsolver J.G., Huey R.B. (eds.). Biotic interactions and global change. Sinauer, Sunderland, MA, USA.
    • (1993) Biotic interactions and global change , pp. 179-197
    • Geber, M.A.1    Dawson, T.E.2
  • 23
    • 0002324167 scopus 로고
    • Minimum viable populations: Processes of species extinction
    • In: Soule M.E. (ed.), Sinauer, Sunderland, MA, USA
    • Gilpin M.E., Soulé M.E. 1986. Minimum viable populations: processes of species extinction. Pp. 19-34. In: Soule M.E. (ed.). Conservation biology: the science and scarcity of diversity. Sinauer, Sunderland, MA, USA.
    • (1986) Conservation biology: The science and scarcity of diversity , pp. 19-34
    • Gilpin, M.E.1    Soulé, M.E.2
  • 24
    • 0038645396 scopus 로고    scopus 로고
    • Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens
    • DOI: 10.1046/j.1365-294X.2003.01860.x
    • Goldstein P.Z., Desalle R. 2003. Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens. Molecular Ecology 12 (7): 1993-1998. DOI: 10.1046/j.1365-294X.2003.01860.x
    • (2003) Molecular Ecology , vol.12 , Issue.7 , pp. 1993-1998
    • Goldstein, P.Z.1    Desalle, R.2
  • 25
    • 0021054889 scopus 로고
    • The zoogeography of African freshwater fishes: Bioaccountancy or biogeography?
    • In: Sims R.W., Price J.H., Whalley P.E.S. (eds.), Academic Press, London, UK
    • Greenwood P.H. 1983. The zoogeography of African freshwater fishes: bioaccountancy or biogeography? Pp. 179-199. In: Sims R.W., Price J.H., Whalley P.E.S. (eds.) Evolution, time and space: The emergence of the biosphere. Academic Press, London, UK.
    • (1983) Evolution, time and space: The emergence of the biosphere , pp. 179-199
    • Greenwood, P.H.1
  • 28
    • 34447337206 scopus 로고    scopus 로고
    • Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring
    • DOI: 10.1186/1741-7007-5-24
    • Hajibabaei M., Singer G.A.C., Clare E.L., Hebert P.D.N. 2007. Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring. BMC Biology 5: 24. DOI: 10.1186/1741-7007-5-24
    • (2007) BMC Biology , vol.5 , pp. 24
    • Hajibabaei, M.1    Singer, G.A.C.2    Clare, E.L.3    Hebert, P.D.N.4
  • 29
    • 27744598217 scopus 로고    scopus 로고
    • The phylogenetic relationships among nondiplomystid catfishes as inferred from mitochondrial cytochrome b sequences; the search for the ictalurid sister taxon (Otophysi: Siluriformes)
    • DOI: 10.1016/j.ympev.2005.04.029
    • Hardman M. 2005. The phylogenetic relationships among nondiplomystid catfishes as inferred from mitochondrial cytochrome b sequences; the search for the ictalurid sister taxon (Otophysi: Siluriformes). Molecular Phylogenetics and Evolution 37 (3): 700-720. DOI: 10.1016/j.ympev.2005.04.029,
    • (2005) Molecular Phylogenetics and Evolution , vol.37 , Issue.3 , pp. 700-720
    • Hardman, M.1
  • 30
    • 8844220527 scopus 로고    scopus 로고
    • Identification of birds through DNA barcodes
    • DOI: 10.1371/journal.pbio.0020312
    • Hebert P.D.N., Stoeckle M.Y., Zemlak T.S., Francis C.M. 2004. Identification of birds through DNA barcodes. PLoS Biology 2 (10): E312. DOI: 10.1371/journal.pbio.0020312
    • (2004) PLoS Biology , vol.2 , Issue.10
    • Hebert, P.D.N.1    Stoeckle, M.Y.2    Zemlak, T.S.3    Francis, C.M.4
  • 31
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • DOI: 10.1093/sysbio/42.2.182
    • Hillis D.M., Bull J.J. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42 (2): 182-92. DOI: 10.1093/sysbio/42.2.182
    • (1993) Systematic Biology , vol.42 , Issue.2 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 32
    • 0030700253 scopus 로고    scopus 로고
    • Population diversity: Its extent and extinction
    • DOI: 10.1126/science.278.5338.689
    • Hughes J.B., Daily G.C., Ehrlich P.R. 1997. Population diversity: Its extent and extinction. Science 278 (5338): 689-692. DOI: 10.1126/science.278.5338.689
    • (1997) Science , vol.278 , Issue.5338 , pp. 689-692
    • Hughes, J.B.1    Daily, G.C.2    Ehrlich, P.R.3
  • 35
    • 0035707845 scopus 로고    scopus 로고
    • The pace of modern life II: From rates of contemporary microevolution to pattern and process
    • DOI: 10.1023/A:1013375419520
    • Kinnison M.T., Hendry A.P. 2001. The pace of modern life II: from rates of contemporary microevolution to pattern and process. Genetica 112-113 (1): 145-164. DOI: 10.1023/A:1013375419520
    • (2001) Genetica , vol.112-113 , Issue.1 , pp. 145-164
    • Kinnison, M.T.1    Hendry, A.P.2
  • 40
    • 80053962856 scopus 로고    scopus 로고
    • DNA barcoding discriminates freshwater fishes from southeastern Nigeria and provides river systemlevel phylogeographic resolution within some species
    • DOI: 10.3109/19401736.2010.536537
    • Nwani C.D., Becker S., Braid H.E., Ude E.F., Okogwu O.I., Hanner R. 2011. DNA barcoding discriminates freshwater fishes from southeastern Nigeria and provides river systemlevel phylogeographic resolution within some species. Mitochondrial DNA 22 (S1): 43-51. DOI: 10.3109/19401736.2010.536537
    • (2011) Mitochondrial DNA , vol.22 , Issue.S1 , pp. 43-51
    • Nwani, C.D.1    Becker, S.2    Braid, H.E.3    Ude, E.F.4    Okogwu, O.I.5    Hanner, R.6
  • 42
    • 1042304216 scopus 로고    scopus 로고
    • Ape: Analyses of phylogenetics and evolution in R language
    • DOI: 10.1093/bioinformatics/btg412
    • Paradis E., Claude J., Strimmer K. 2004. Ape: analyses of phylogenetics and evolution in R language. Bioinformatics 20 (2): 289-290. DOI: 10.1093/bioinformatics/btg412
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 43
    • 0023496715 scopus 로고
    • Geomorphic evolution of southern Africa since the Mesozoic
    • Partridge T.C., Maud R.R. 1987. Geomorphic evolution of southern Africa since the Mesozoic. South African Journal of Geology 90 (2): 165-184.
    • (1987) South African Journal of Geology , vol.90 , Issue.2 , pp. 165-184
    • Partridge, T.C.1    Maud, R.R.2
  • 44
    • 0028976071 scopus 로고
    • The future of biodiversity
    • DOI: 10.1126/science.269.5222.347
    • Pimm S.L., Russell G.J., Gittleman J.L., Brooks T.M. 1995. The future of biodiversity. Science 269 (5222): 347-350. DOI: 10.1126/science.269.5222.347
    • (1995) Science , vol.269 , Issue.5222 , pp. 347-350
    • Pimm, S.L.1    Russell, G.J.2    Gittleman, J.L.3    Brooks, T.M.4
  • 45
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: Phylogenetic model averaging
    • DOI: 10.1093/molbev/msn083
    • Posada D. 2008. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25 (7): 1253-1256. DOI: 10.1093/molbev/msn083
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 46
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
    • DOI: 10.1080/10635150490522304
    • Posada D., Buckley T.R. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology 53 (5): 793-808. DOI: 10.1080/10635150490522304
    • (2004) Systematic Biology , vol.53 , Issue.5 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 47
    • 77957961612 scopus 로고    scopus 로고
    • DNA Barcodes for marine biodiversity: Moving fast forward?
    • DOI: 10.3390/d2040450
    • Radulovici A.E., Archambault P., Dufresne F. 2010. DNA Barcodes for marine biodiversity: Moving fast forward? Diversity 2 (4): 450-472. DOI: 10.3390/d2040450
    • (2010) Diversity , vol.2 , Issue.4 , pp. 450-472
    • Radulovici, A.E.1    Archambault, P.2    Dufresne, F.3
  • 48
    • 3242881496 scopus 로고    scopus 로고
    • Managing microevolution: Restoration in the face of global change
    • Rice K.J., Emery N.C. 2003. Managing microevolution: Restoration in the face of global change. Frontiers in Ecology and the Environment 1 (9): 469-478.
    • (2003) Frontiers in Ecology and the Environment , vol.1 , Issue.9 , pp. 469-478
    • Rice, K.J.1    Emery, N.C.2
  • 49
    • 49549138694 scopus 로고
    • Geographical distribution of African freshwater fishes
    • DOI: 10.1111/j.1096-3642.1975.tb01893.x
    • Roberts T.R. 1975. Geographical distribution of African freshwater fishes. Zoological Journal of the Linnean Society 57 (4): 249-319. DOI: 10.1111/j.1096-3642.1975.tb01893.x
    • (1975) Zoological Journal of the Linnean Society , vol.57 , Issue.4 , pp. 249-319
    • Roberts, T.R.1
  • 50
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI: 10.1093/bioinformatics/btg180
    • Ronquist F., Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (12): 1572-1574. DOI: 10.1093/bioinformatics/btg180
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 51
    • 80555149365 scopus 로고    scopus 로고
    • The Influence of late quaternary climate-change velocity on species endemism
    • DOI: 10.1126/science.1210173
    • Sandel B., Arge L. Dalsgaard B., Davies R.G., Gaston K.J., Sutherland W.J., Svenning J.-C. 2011. The Influence of late quaternary climate-change velocity on species endemism. Science 334 (6056): 660-664. DOI: 10.1126/science.1210173
    • (2011) Science , vol.334 , Issue.6056 , pp. 660-664
    • Sandel, B.1    Arge, L.2    Dalsgaard, B.3    Davies, R.G.4    Gaston, K.J.5    Sutherland, W.J.6    Svenning, J.-C.7
  • 52
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • Sanderson M.J. 2002. Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach. Molecular Biology and Evolution 19 (1): 101-109.
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.1 , pp. 101-109
    • Sanderson, M.J.1
  • 53
    • 0037297823 scopus 로고    scopus 로고
    • Contemporary evolution meets conservation biology
    • DOI: 10.1016/S0169-5347(02)00044-7
    • Stockwell C.A., Hendry A.P., Kinnison M.T. 2003. Contemporary evolution meets conservation biology. Trends in Ecology and Evolution 18 (2): 94-101. DOI: 10.1016/S0169-5347(02)00044-7
    • (2003) Trends in Ecology and Evolution , vol.18 , Issue.2 , pp. 94-101
    • Stockwell, C.A.1    Hendry, A.P.2    Kinnison, M.T.3
  • 55
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105 (2): 437-460.
    • (1983) Genetics , vol.105 , Issue.2 , pp. 437-460
    • Tajima, F.1
  • 56
    • 25444518505 scopus 로고    scopus 로고
    • Late cenozoic moisture history of East Africa
    • DOI: 10.1126/science.1112964
    • Trauth M.H., Maslin M.A., Deino A., Strecker M.R. 2005. Late cenozoic moisture history of East Africa. Science 309 (5743): 2051-2053. DOI: 10.1126/science.1112964
    • (2005) Science , vol.309 , Issue.5743 , pp. 2051-2053
    • Trauth, M.H.1    Maslin, M.A.2    Deino, A.3    Strecker, M.R.4
  • 58
    • 36549023365 scopus 로고    scopus 로고
    • Back to the future: Museum specimens in population genetics
    • DOI: 10.1016/j.tree.2007.08.017
    • Wandeler P., Hoeck P.E.A., Keller L.F. 2007. Back to the future: museum specimens in population genetics. Trends in Ecology Evolution 22 (12): 634-642. DOI: 10.1016/j.tree.2007.08.017
    • (2007) Trends in Ecology Evolution , vol.22 , Issue.12 , pp. 634-642
    • Wandeler, P.1    Hoeck, P.E.A.2    Keller, L.F.3
  • 62
    • 0036431235 scopus 로고    scopus 로고
    • Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
    • DOI: 10.1016/S1055-7903(02)00244-0
    • Wilcox T.P., Zwickl D.J., Heath T.A., Hillis D.M. 2002. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution 25 (2): 361-371. DOI: 10.1016/S1055-7903(02)00244-0
    • (2002) Molecular Phylogenetics and Evolution , vol.25 , Issue.2 , pp. 361-371
    • Wilcox, T.P.1    Zwickl, D.J.2    Heath, T.A.3    Hillis, D.M.4
  • 64
    • 77749282945 scopus 로고    scopus 로고
    • Favourable climate change response explains non-native species' success in Thoreau's Woods
    • DOI: 10.1371/journal.pone.0008878
    • Willis C.G., Ruhfel B.R., Primack R.B., Miller-Rushing A.J., Losos J.B., Davis C.C. 2010. Favourable climate change response explains non-native species' success in Thoreau's Woods. PLoS ONE 5 (1): e8878. DOI: 10.1371/journal.pone.0008878
    • (2010) PLoS ONE , vol.5 , Issue.1
    • Willis, C.G.1    Ruhfel, B.R.2    Primack, R.B.3    Miller-Rushing, A.J.4    Losos, J.B.5    Davis, C.C.6
  • 65
    • 84867287182 scopus 로고    scopus 로고
    • Phylogenetic patterns of extinction risk in the Eastern Arc Ecosystems, an African biodiversity hotspot
    • DOI: 10.1371/journal.pone.0047082
    • Yessoufou K., Daru B.H., Davies T.J. 2012 Phylogenetic patterns of extinction risk in the Eastern Arc Ecosystems, an African biodiversity hotspot. PLoS ONE 7 (10): e47082. DOI: 10.1371/journal.pone.0047082
    • (2012) PLoS ONE , vol.7 , Issue.10
    • Yessoufou, K.1    Daru, B.H.2    Davies, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.