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Volumn 12, Issue 3, 2012, Pages 562-565

Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding

Author keywords

Barcoding gap; Characteristic attributes; Integrative taxonomy; Mini barcodes; Neighbour joining; Threshold optimization

Indexed keywords

ARTICLE; BIOLOGY; CLASSIFICATION; COMPUTER PROGRAM; DNA BARCODING; METHODOLOGY; MOLECULAR DIAGNOSIS;

EID: 84859563653     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03108.x     Document Type: Article
Times cited : (405)

References (28)
  • 2
    • 70749142653 scopus 로고    scopus 로고
    • DNA barcode analysis: a comparison of phylogenetic and statistical classification methods
    • Austerlitz F, David O, Schaeffer B et al. (2009) DNA barcode analysis: a comparison of phylogenetic and statistical classification methods. BMC Bioinformatics, 10, S10.
    • (2009) BMC Bioinformatics , vol.10
    • Austerlitz, F.1    David, O.2    Schaeffer, B.3
  • 3
    • 79959611546 scopus 로고    scopus 로고
    • Unraveling a 146years old taxonomic puzzle: validation of Malabar snakehead, species-status and its relevance for channid systematics and evolution
    • Benziger A, Philip S, Raghavan R et al. (2011) Unraveling a 146years old taxonomic puzzle: validation of Malabar snakehead, species-status and its relevance for channid systematics and evolution. PLoS ONE, 6, e21272.
    • (2011) PLoS ONE , vol.6
    • Benziger, A.1    Philip, S.2    Raghavan, R.3
  • 4
    • 79960196665 scopus 로고    scopus 로고
    • Exploring character conflict in molecular data
    • Cruickshank RH (2011) Exploring character conflict in molecular data. Zootaxa, 2946, 45-51.
    • (2011) Zootaxa , vol.2946 , pp. 45-51
    • Cruickshank, R.H.1
  • 5
    • 11944258898 scopus 로고
    • Populations, genetic variation and the delimitation of phylogenetic species
    • Davis JI, Nixon KC (1992) Populations, genetic variation and the delimitation of phylogenetic species. Systematic Biology, 41, 421-435.
    • (1992) Systematic Biology , vol.41 , pp. 421-435
    • Davis, J.I.1    Nixon, K.C.2
  • 6
    • 77958616382 scopus 로고    scopus 로고
    • The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia
    • Francis CM, Borisenko AV, Ivanova NV et al. (2010) The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia. PLoS ONE, 5, e12575.
    • (2010) PLoS ONE , vol.5
    • Francis, C.M.1    Borisenko, A.V.2    Ivanova, N.V.3
  • 9
    • 65349140121 scopus 로고    scopus 로고
    • Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity
    • Janzen DH, Hallwachs W, Blandin P et al. (2009) Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity. Molecular Ecology Resources, 9, 1-26.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 1-26
    • Janzen, D.H.1    Hallwachs, W.2    Blandin, P.3
  • 10
    • 44349095887 scopus 로고    scopus 로고
    • adegenet: a R package for the multivariate analysis of genetic markers
    • Jombart T (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403-1405.
    • (2008) Bioinformatics , vol.24 , pp. 1403-1405
    • Jombart, T.1
  • 13
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success
    • Meier R, Shiyang K, Vaidya G, Ng PKL (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Systematic Biology, 55, 715-728.
    • (2006) Systematic Biology , vol.55 , pp. 715-728
    • Meier, R.1    Shiyang, K.2    Vaidya, G.3    Ng, P.K.L.4
  • 15
    • 29144473686 scopus 로고    scopus 로고
    • DNA barcoding: error rates based on comprehensive sampling
    • Meyer CP, Paulay G (2005) DNA barcoding: error rates based on comprehensive sampling. PLoS Biology, 3, 2229-2238.
    • (2005) PLoS Biology , vol.3 , pp. 2229-2238
    • Meyer, C.P.1    Paulay, G.2
  • 17
    • 77949527981 scopus 로고    scopus 로고
    • pegas: an R package for population genetics with an integrated-modular approach
    • Paradis E (2010) pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics, 26, 419-420.
    • (2010) Bioinformatics , vol.26 , pp. 419-420
    • Paradis, E.1
  • 18
    • 1042304216 scopus 로고    scopus 로고
    • APE: analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 19
    • 79961135005 scopus 로고    scopus 로고
    • R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0.
    • R Development Core Team (2011a) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0.
    • (2011) R: A Language and Environment for Statistical Computing
  • 20
    • 84859593884 scopus 로고    scopus 로고
    • R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria.
    • R Development Core Team (2011b) R Data Import/Export. R Foundation for Statistical Computing, Vienna, Austria.
    • (2011) R Data Import/Export
  • 21
    • 34249726676 scopus 로고    scopus 로고
    • Patterns of evolution of mitochondrial cytochrome c oxidase I and II DNA and implications for DNA barcoding
    • Roe AD, Sperling FAH (2007) Patterns of evolution of mitochondrial cytochrome c oxidase I and II DNA and implications for DNA barcoding. Molecular Phylogenetics and Evolution, 44, 325-345.
    • (2007) Molecular Phylogenetics and Evolution , vol.44 , pp. 325-345
    • Roe, A.D.1    Sperling, F.A.H.2
  • 22
    • 33947104905 scopus 로고    scopus 로고
    • Statistical tests for taxonomic distinctiveness from observations of monophyly
    • Rosenberg NA (2007) Statistical tests for taxonomic distinctiveness from observations of monophyly. Evolution, 61, 317-323.
    • (2007) Evolution , vol.61 , pp. 317-323
    • Rosenberg, N.A.1
  • 23
    • 55149094327 scopus 로고    scopus 로고
    • CAOS software for use in character-based DNA barcoding
    • Sarkar I, Planet P, DeSalle R (2008) CAOS software for use in character-based DNA barcoding. Molecular Ecology Resources, 8, 1256-1259.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 1256-1259
    • Sarkar, I.1    Planet, P.2    DeSalle, R.3
  • 24
    • 79951548848 scopus 로고    scopus 로고
    • phangorn: phylogenetic analysis in R
    • Schliep K (2011) phangorn: phylogenetic analysis in R. Bioinformatics, 27, 592-593.
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.1
  • 25
    • 0042011260 scopus 로고    scopus 로고
    • Delimiting species: a Renaissance issue in systematic biology
    • Sites JWJ, Marshall JC (2003) Delimiting species: a Renaissance issue in systematic biology. Trends in Ecology and Evolution, 18, 462-470.
    • (2003) Trends in Ecology and Evolution , vol.18 , pp. 462-470
    • Sites, J.W.J.1    Marshall, J.C.2
  • 28
    • 67649845828 scopus 로고    scopus 로고
    • DNA barcode divergence among species and genera of birds and fishes
    • Ward RD (2009) DNA barcode divergence among species and genera of birds and fishes. Molecular Ecology Resources, 9, 1077-1085.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 1077-1085
    • Ward, R.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.