-
1
-
-
0043015531
-
Microsatellites, from molecules to populations and back
-
Jarne P, Lagoda PJL, (1996) Microsatellites, from molecules to populations and back. Trends Ecol Evol 11: 424-429.
-
(1996)
Trends Ecol Evol
, vol.11
, pp. 424-429
-
-
Jarne, P.1
Lagoda, P.J.L.2
-
2
-
-
0036897944
-
Microsatellites: Genomic distribution, putative functions, and mutational mechanisms: a review
-
Li YC, Korol AB, Fahima T, Beiles A, Nevo E, (2002) Microsatellites: Genomic distribution, putative functions, and mutational mechanisms: a review. Mol Ecol 11: 2453-2465.
-
(2002)
Mol Ecol
, vol.11
, pp. 2453-2465
-
-
Li, Y.C.1
Korol, A.B.2
Fahima, T.3
Beiles, A.4
Nevo, E.5
-
3
-
-
0037350984
-
Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects
-
Zhang DX, Hewitt GM, (2003) Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol Ecol 12: 563-584.
-
(2003)
Mol Ecol
, vol.12
, pp. 563-584
-
-
Zhang, D.X.1
Hewitt, G.M.2
-
4
-
-
3042782819
-
Microsatellites: simple sequences with complex evolution
-
Ellegren H, (2004) Microsatellites: simple sequences with complex evolution. Nat Rev Genet 5: 435-445.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
5
-
-
33645894192
-
Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers
-
Selkoe KA, Toonen RJ, (2006) Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers. Ecol Letters 9: 615-629.
-
(2006)
Ecol Letters
, vol.9
, pp. 615-629
-
-
Selkoe, K.A.1
Toonen, R.J.2
-
6
-
-
0034767567
-
Microsatellite evolution in vertebrates: Inference from AC dinucleotide repeats
-
Neff BD, Gross MR, (2001) Microsatellite evolution in vertebrates: Inference from AC dinucleotide repeats. Evolution 55: 1717-1733.
-
(2001)
Evolution
, vol.55
, pp. 1717-1733
-
-
Neff, B.D.1
Gross, M.R.2
-
7
-
-
17644380002
-
Mendelian microsatellite loci for the Caribbean coral Acropora palmata
-
Baums IB, Hughes CR, Hellberg ME, (2005) Mendelian microsatellite loci for the Caribbean coral Acropora palmata. Mar Ecol Prog Ser 288: 115-127.
-
(2005)
Mar Ecol Prog Ser
, vol.288
, pp. 115-127
-
-
Baums, I.B.1
Hughes, C.R.2
Hellberg, M.E.3
-
8
-
-
4544313277
-
Lepidopteran microsatellite DNA: redundant but promising
-
doi:10.1016/j.tree.2004.07.020
-
Zhang D-X, (2004) Lepidopteran microsatellite DNA: redundant but promising. Trends Ecol Evol 19: 507-509 doi:10.1016/j.tree.2004.07.020.
-
(2004)
Trends Ecol Evol
, vol.19
, pp. 507-509
-
-
Zhang, D.-X.1
-
9
-
-
84864156953
-
Successful development of microsatellite markers in a challenging species: the horizontal borer Austroplatypus incompertus (Coleoptera: Curculionidae)
-
Smith S, Joss T, Stow A, (2009) Successful development of microsatellite markers in a challenging species: the horizontal borer Austroplatypus incompertus (Coleoptera: Curculionidae). Bull Entom Res 101: 551-555.
-
(2009)
Bull Entom Res
, vol.101
, pp. 551-555
-
-
Smith, S.1
Joss, T.2
Stow, A.3
-
10
-
-
79953156450
-
Challenges of microsatellite development in Lepidoptera: Euphydryas aurinia (Nymphalidae) as a case study
-
Sinama M, Dubut V, Costedoat C, Gilles A, Junker M, et al. (2011) Challenges of microsatellite development in Lepidoptera: Euphydryas aurinia (Nymphalidae) as a case study. Eur J Entomol 108: 261-266.
-
(2011)
Eur J Entomol
, vol.108
, pp. 261-266
-
-
Sinama, M.1
Dubut, V.2
Costedoat, C.3
Gilles, A.4
Junker, M.5
-
11
-
-
65449135172
-
Identification of microsatellites from an extinct moa species using high throughput (454) sequence data
-
Allentoft ME, Schuster SC, Holdaway RN, Hale ML, McLay,etal. (2009) Identification of microsatellites from an extinct moa species using high throughput (454) sequence data. BioTechniques, 46, 195-200.
-
(2009)
BioTechniques
, vol.46
, pp. 195-200
-
-
Allentoft, M.E.1
Schuster, S.C.2
Holdaway, R.N.3
Hale, M.L.4
McLay5
-
12
-
-
84856934143
-
Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake
-
doi:10.1371/journal.pone.0030953
-
Castoe TA, Poole AW, de Koning APJ, Jones KL, Tomback DF, et al. (2012) Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake. PLoS ONE 7): e30953 doi:10.1371/journal.pone.0030953.
-
(2012)
PLoS ONE
, vol.7
-
-
Castoe, T.A.1
Poole, A.W.2
de Koning, A.P.J.3
Jones, K.L.4
Tomback, D.F.5
-
13
-
-
79959277219
-
Current trends in microsatellite genotyping
-
Guichoux E, Lagache L, Wagner S, Chaumeil P, Léger P, et al. (2011) Current trends in microsatellite genotyping. Mol Ecol Resour 11: 591-611.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 591-611
-
-
Guichoux, E.1
Lagache, L.2
Wagner, S.3
Chaumeil, P.4
Léger, P.5
-
14
-
-
79959250426
-
High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries
-
Malausa T, Gilles A, Meglecz E, Blanquart H, Duthoy S, et al. (2011) High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Mol Ecol Resour 11: 638-644.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 638-644
-
-
Malausa, T.1
Gilles, A.2
Meglecz, E.3
Blanquart, H.4
Duthoy, S.5
-
16
-
-
19944396462
-
Isolating microsatellite DNA loci
-
In: Zimmer EA, Roalson E, editors, Academic Press, San Diego, USA
-
Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. In: Zimmer EA, Roalson E, editors. Molecular Evolution: Producing the Biochemical Data, Part B. Academic Press, San Diego, USA, 202-222.
-
(2005)
Molecular Evolution: Producing the Biochemical Data, Part B
, pp. 202-222
-
-
Glenn, T.C.1
Schable, N.A.2
-
17
-
-
77949515434
-
QDD: A user-friendly program to select microsatellite markers and design primers from large sequencing projects
-
doi:10.1093/bioinformatics/btp670
-
Megelcz E, Costedoat C, Dubut V, Gilles A, Malausa T, et al. (2010) QDD: A user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics 26: 403-404 doi: 10.1093/bioinformatics/btp670.
-
(2010)
Bioinformatics
, vol.26
, pp. 403-404
-
-
Megelcz, E.1
Costedoat, C.2
Dubut, V.3
Gilles, A.4
Malausa, T.5
-
18
-
-
80054073468
-
Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development
-
Gardner MG, Fitch AJ, Bertozzi T, Lowe AJ, (2011) Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development. Mol Ecol Res 11 (6): 1093-1101.
-
(2011)
Mol Ecol Res
, vol.11
, Issue.6
, pp. 1093-1101
-
-
Gardner, M.G.1
Fitch, A.J.2
Bertozzi, T.3
Lowe, A.J.4
-
19
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
-
20
-
-
33750831582
-
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
-
Kohany O, Gentles AJ, Hankus L, Jurka J, (2006) Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7: 474.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 474
-
-
Kohany, O.1
Gentles, A.J.2
Hankus, L.3
Jurka, J.4
-
21
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H, (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-86.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
22
-
-
0034958416
-
M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele sizing methods
-
Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF, (2001) M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele sizing methods. BioTechniques 31: 24-28.
-
(2001)
BioTechniques
, vol.31
, pp. 24-28
-
-
Boutin-Ganache, I.1
Raposo, M.2
Raymond, M.3
Deschepper, C.F.4
-
23
-
-
84055187865
-
Isolation and characterization of microsatellite markers for the Crimson Jobfish, Pristipomoides filamentosus (Lutjanidae)
-
Gaither MR, Toonen RJ, Sorenson L, Bowen BW, (2010) Isolation and characterization of microsatellite markers for the Crimson Jobfish, Pristipomoides filamentosus (Lutjanidae). Cons Genet Res 2: 169-172.
-
(2010)
Cons Genet Res
, vol.2
, pp. 169-172
-
-
Gaither, M.R.1
Toonen, R.J.2
Sorenson, L.3
Bowen, B.W.4
-
24
-
-
79960930201
-
Development of microsatellite markers from four Hawaiian corals: Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobata
-
Concepcion GT, Polato NR, Baums IB, Toonen RJ, (2010) Development of microsatellite markers from four Hawaiian corals: Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobata. Cons Genet Res 2: 11-15.
-
(2010)
Cons Genet Res
, vol.2
, pp. 11-15
-
-
Concepcion, G.T.1
Polato, N.R.2
Baums, I.B.3
Toonen, R.J.4
-
25
-
-
55949108678
-
Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.)
-
doi:10.1007/s00122-008-0883-3
-
Fernandez-Silva I, Eduardo I, Blanca J, Esteras C, Pico B, et al. (2008) Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.). Theor Appl Genet 118: 139-150 doi:10.1007/s00122-008-0883-3.
-
(2008)
Theor Appl Genet
, vol.118
, pp. 139-150
-
-
Fernandez-Silva, I.1
Eduardo, I.2
Blanca, J.3
Esteras, C.4
Pico, B.5
-
26
-
-
65449144325
-
Evaluation of next generation sequencing platforms for population targeted sequencing studies
-
Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, et al. (2009) Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biology 10: R32.
-
(2009)
Genome Biology
, vol.10
-
-
Harismendy, O.1
Ng, P.C.2
Strausberg, R.L.3
Wang, X.4
Stockwell, T.B.5
-
27
-
-
77950645212
-
Artificial and natural duplicates in pyrosequencing reads of metagenomic data
-
Niu B, Fu L, Sun S, Li W, (2010) Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics 11: 187.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 187
-
-
Niu, B.1
Fu, L.2
Sun, S.3
Li, W.4
-
29
-
-
0004111743
-
-
Version 6, July 27,1996 Laboratory of Molecular Systematics- MRC 534, MSC Smithsonian Institution, Washington DC 20560
-
Glenn TC (1996) The Microsatellite Manual Version 6, July 27,1996 Laboratory of Molecular Systematics- MRC 534, MSC Smithsonian Institution, Washington DC 20560.
-
(1996)
The Microsatellite Manual
-
-
Glenn, T.C.1
-
30
-
-
79956044149
-
Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing
-
doi:10.1186/1471-2164-12-245
-
Gilles A, Meglécz E, Pech N, Ferreira S, Malausa T, et al. (2011) Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. BMC Genomics 12: 245 doi:10.1186/1471-2164-12-245.
-
(2011)
BMC Genomics
, vol.12
, pp. 245
-
-
Gilles, A.1
Meglécz, E.2
Pech, N.3
Ferreira, S.4
Malausa, T.5
-
31
-
-
0036250001
-
Plant transposable elements: where genetics meets genomics
-
Feschotte C, Jiang N, Wessler SR, (2002) Plant transposable elements: where genetics meets genomics. Nat Rev Genet 3: 329-341.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 329-341
-
-
Feschotte, C.1
Jiang, N.2
Wessler, S.R.3
-
32
-
-
78650309881
-
Comparative genomic analysis reveals species dependent complexities that explain difficulties with microsatellite marker development in molluscs
-
McInerney CE, Allcock AL, Johnson MP, Bailie DA, Prodohl PA, (2011) Comparative genomic analysis reveals species dependent complexities that explain difficulties with microsatellite marker development in molluscs. Heredity 106: 78-87.
-
(2011)
Heredity
, vol.106
, pp. 78-87
-
-
McInerney, C.E.1
Allcock, A.L.2
Johnson, M.P.3
Bailie, D.A.4
Prodohl, P.A.5
-
33
-
-
84855281420
-
Repetitive elements may comprise over two-thirds of the human genome
-
de Koning APJ, Gu W, Castoe TA, Batzer MA, Pollock DD, (2011) Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet 7 (12): e1002384.
-
(2011)
PLoS Genet
, vol.7
, Issue.12
-
-
de Koning, A.P.J.1
Gu, W.2
Castoe, T.A.3
Batzer, M.A.4
Pollock, D.D.5
-
34
-
-
84870163833
-
Transposable elements as a potential source for understanding the fish genome
-
Ferreira DC, Porto-Foresti F, Oliveira C, Foresti F, (2011) Transposable elements as a potential source for understanding the fish genome. Mobile Genetic Elements 1: 112-117.
-
(2011)
Mobile Genetic Elements
, vol.1
, pp. 112-117
-
-
Ferreira, D.C.1
Porto-Foresti, F.2
Oliveira, C.3
Foresti, F.4
-
35
-
-
0033084050
-
Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley
-
Ramsay L, Macaulay M, Cardle L, Morgante M, degli Ivanissevich S, et al. (1999) Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley. Plant J 17: 415-425.
-
(1999)
Plant J
, vol.17
, pp. 415-425
-
-
Ramsay, L.1
Macaulay, M.2
Cardle, L.3
Morgante, M.4
degli Ivanissevich, S.5
-
36
-
-
0037372022
-
Pearl, a novel family of putative transposable elements in bivalve molluscs
-
Gaffney PM, Pierce JC, MacKinley AG, Titchen DA, Glenn WK, (2003) Pearl, a novel family of putative transposable elements in bivalve molluscs. J Mol Evol 56: 308-316.
-
(2003)
J Mol Evol
, vol.56
, pp. 308-316
-
-
Gaffney, P.M.1
Pierce, J.C.2
MacKinley, A.G.3
Titchen, D.A.4
Glenn, W.K.5
-
37
-
-
33749867438
-
Population structure within and between species of the Mediterranean triplefin fish Tripterygion delaisi revealed by highly polymorphic microsatellite loci
-
Carreras-Carbonell J, Macpherson E, Pascual M, (2006) Population structure within and between species of the Mediterranean triplefin fish Tripterygion delaisi revealed by highly polymorphic microsatellite loci. Mol Ecol 15: 3527-3539.
-
(2006)
Mol Ecol
, vol.15
, pp. 3527-3539
-
-
Carreras-Carbonell, J.1
Macpherson, E.2
Pascual, M.3
-
38
-
-
46649114729
-
Identification of repeat structure in large genomes using repeat probability clouds
-
Gu W, Castoe TA, Hedges DJ, Batzer MA, Pollock DD, (2008) Identification of repeat structure in large genomes using repeat probability clouds. Anal Biochem 380: 77-83.
-
(2008)
Anal Biochem
, vol.380
, pp. 77-83
-
-
Gu, W.1
Castoe, T.A.2
Hedges, D.J.3
Batzer, M.A.4
Pollock, D.D.5
|