-
1
-
-
33750935287
-
Gaps and forks in DNA replication: Rediscovering old models
-
Lehmann,A.R. and Fuchs,R.P. (2006) Gaps and forks in DNA replication: rediscovering old models. DNA Repair, 5, 1495-1498.
-
(2006)
DNA Repair
, vol.5
, pp. 1495-1498
-
-
Lehmann, A.R.1
Fuchs, R.P.2
-
2
-
-
0004228157
-
-
2nd edn. ASM Press, Washington, DC
-
Friedberg,E.C., Walker,G.C., Siede,W., Wood,R., Schultz,R.A. and Ellenberger,T. (2006) DNA Repair and Mutagenesis, 2nd edn. ASM Press, Washington, DC.
-
(2006)
DNA Repair and Mutagenesis
-
-
Schultz, R.A.1
Ellenberger, T.2
-
3
-
-
34249941966
-
Translesion syn thesis: Y-family polymerases and the polymerase switch
-
Lehmann,A.R., Niimi,A., Ogi,T., Brown,S., Sabbioneda,S., Wing,J.F., Kannouche,P.L. and Green,C.M. (2007) Translesion synthesis: Y-family polymerases and the polymerase switch. DNA Repair, 6, 891-899.
-
(2007)
DNA Repair
, vol.6
, pp. 891-899
-
-
Kannouche, P.L.1
Green, C.M.2
-
4
-
-
79251481487
-
DNA polymerases and cancer
-
Lange,S.S., Takata,K. and Wood,R.D. (2011) DNA polymerases and cancer. Nat. Rev. Cancer, 11, 96-110.
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 96-110
-
-
Takata, K.1
Wood, R.D.2
-
5
-
-
84857411787
-
Y-family DNA polymerases and their role in tolerance of cellular DNA damage
-
Sale,J.E., Lehmann,A.R. and Woodgate,R. (2012) Y-family DNA polymerases and their role in tolerance of cellular DNA damage. Nat. Rev. Mol. Cell. Biol., 13, 141-152.
-
(2012)
Nat. Rev. Mol. Cell. Biol.
, vol.13
, pp. 141-152
-
-
Lehmann, A.R.1
Woodgate, R.2
-
6
-
-
0033578040
-
The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase Z
-
Masutani,C., Kusumoto,R., Yamada,A., Dohmae,N., Yokoi,M., Yuasa,M., Araki,M., Iwai,S., Takio,K. and Hanaoka,F. (1999) The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase Z. Nature, 399, 700-704.
-
(1999)
Nature
, vol.399
, pp. 700-704
-
-
Takio, K.1
Hanaoka, F.2
-
7
-
-
0033538470
-
HRAD30 mutations in the variant form of Xeroderma Pigmentosum
-
Johnson,R.E., Kondratick,C.M., Prakash,S. and Prakash,L. (1999) hRAD30 mutations in the variant form of Xeroderma Pigmentosum. Science, 285, 263-265.
-
(1999)
Science
, vol.285
, pp. 263-265
-
-
Prakash, S.1
Prakash, L.2
-
8
-
-
0034677948
-
Fidelity of human DNA polymerase Z
-
Johnson,R.E., Washington,M.T., Prakash,S. and Prakash,L. (2000) Fidelity of human DNA polymerase Z. J. Biol. Chem., 275, 7447-7450.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 7447-7450
-
-
Prakash, S.1
Prakash, L.2
-
9
-
-
0034660259
-
Mechanisms of accurate translesion synthesis by human DNA polymerase Z
-
Masutani,C., Kusumoto,R., Iwai,S. and Hanaoka,F. (2000) Mechanisms of accurate translesion synthesis by human DNA polymerase Z. EMBO J., 19, 3100-3109.
-
(2000)
EMBO J.
, vol.19
, pp. 3100-3109
-
-
Iwai, S.1
Hanaoka, F.2
-
10
-
-
77953924511
-
Structure and mechanism of human DNA polymerase Z
-
Biertu? mpfel,C.Zhao,Y., Kondo,Y., Ramon-Maiques,S., Gregory,M., Lee,J.Y., Masutani,C., Lehmann,A.R., Hanaoka,F. and Yang,W. (2010) Structure and mechanism of human DNA polymerase Z. Nature, 465, 1044-1048.
-
(2010)
Nature
, vol.465
, pp. 1044-1048
-
-
Biertumpfel, C.1
Zhao, Y.2
Kondo, Y.3
Ramon-Maiques, S.4
Gregory, M.5
Lee, J.Y.6
Masutani, C.7
Lehmann, A.R.8
Hanaoka, F.9
Yang, W.10
-
11
-
-
0027159226
-
Evidence from mutation spectra that the UV hypermutability of xeroderma pigmentosum variant cells reflects abnormal error-prone replication on a template containing photoproducts
-
Wang,Y.C., Maher,V.M., Mitchell,D.L. and McCormick,J.J. (1993) Evidence from mutation spectra that the UV hypermutability of xeroderma pigmentosum variant cells reflects abnormal, error-prone replication on a template containing photoproducts. Mol. Cell. Biol., 13, 4276-4283.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 4276-4283
-
-
Mitchell, D.L.1
McCormick, J.J.2
-
12
-
-
34248195087
-
Evidence that in Xeroderma Pigmentosum variant cells, which lack DNA polymerase Z, DNA polymrase i causes the very high frequency and unique spectrum of UV-induced mutations
-
Wang,Y., Woodgate,R., McManus,T.P., Mead,S., McCormick,J.J. and Maher,V.M. (2007) Evidence that in Xeroderma Pigmentosum variant cells, which lack DNA polymerase Z, DNA polymrase i causes the very high frequency and unique spectrum of UV-induced mutations. Cancer Res., 67, 3018-3026.
-
(2007)
Cancer Res.
, vol.67
, pp. 3018-3026
-
-
McCormick, J.J.1
Maher, V.M.2
-
13
-
-
67650928194
-
DNA polymerase z cooperates with polymerases k and i in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients
-
Ziv,O., Geacintov,N., Nakajima,S., Yasui,A. and Livneh,Z. (2009) DNA polymerase z cooperates with polymerases k and i in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients. Proc. Natl. Acad. Sci. USA, 106, 11552-11557.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 11552-11557
-
-
Yasui, A.1
Livneh, Z.2
-
14
-
-
0035812849
-
Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication
-
Ling,H., Boudsocq,F., Woodgate,R. and Yang,W. (2001) Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication. Cell, 107, 91-102.
-
(2001)
Cell
, vol.107
, pp. 91-102
-
-
Woodgate, R.1
Yang, W.2
-
15
-
-
0041864009
-
Replication of a cis-syn thymine dimer at atomic resolution
-
Ling,H., Boudsocq,F., Plosky,B.S., Woodgate,R. and Yang,W. (2003) Replication of a cis-syn thymine dimer at atomic resolution. Nature, 424, 1083-1087.
-
(2003)
Nature
, vol.424
, pp. 1083-1087
-
-
Woodgate, R.1
Yang, W.2
-
16
-
-
1642382214
-
Snapshots of replication through an abasic lesion; Structural basis for base substitutions and frameshifts
-
Ling,H., Boudsocq,F., Woodgate,R. and Yang,W. (2004) Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts. Mol. Cell, 13, 751-762.
-
(2004)
Mol. Cell
, vol.13
, pp. 751-762
-
-
Woodgate, R.1
Yang, W.2
-
17
-
-
1442355023
-
Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase
-
Ling,H., Sayer,J.M., Plosky,B.S., Yagi,H., Boudsocq,F., Woodgate,R., Jerina,D.M. and Yang,W. (2004) Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase. Proc. Natl. Acad. Sci. USA, 101, 2265-2269.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 2265-2269
-
-
Jerina, D.M.1
Yang, W.2
-
18
-
-
79952763415
-
Unique active site promotes error-free replication opposite an 8-oxo-guanine lesion by human DNA polymerase iota
-
Kirouac,K.N. and Ling,H. (2011) Unique active site promotes error-free replication opposite an 8-oxo-guanine lesion by human DNA polymerase iota. Proc. Natl. Acad. Sci. USA, 108, 3210-3215.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3210-3215
-
-
Kirouac, K.N.1
Ling, H.2
-
19
-
-
84860792390
-
Structural basis of human DNA polymerase Z-mediated chemoresistance to cisplatin
-
Zhao,Y., Biertumpfel,C., Gregory,M.T., Hua,Y.J., Hanaoka,F. and Yang,W. (2012) Structural basis of human DNA polymerase Z-mediated chemoresistance to cisplatin. Proc. Natl. Acad. Sci. USA, 109, 7269-7274.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 7269-7274
-
-
Hanaoka, F.1
Yang, W.2
-
20
-
-
2342419732
-
DNA replication fidelity
-
Kunkel,T.A. (2004) DNA replication fidelity. J. Biol. Chem., 279, 16895-16898.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 16895-16898
-
-
Kunkel, T.A.1
-
21
-
-
38049125552
-
The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases
-
McCulloch,S.D. and Kunkel,T.A. (2008) The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases. Cell Res., 18, 148-161.
-
(2008)
Cell Res.
, vol.18
, pp. 148-161
-
-
McCulloch, S.D.1
Kunkel, T.A.2
-
22
-
-
19444383801
-
Trading places: How do DNA polymerases switch during Translesion DNA Synthesis?
-
Friedberg,E.C., Lehmann,A.R. and Fuchs,R.P. (2005) Trading places: how do DNA polymerases switch during Translesion DNA Synthesis? Mol. Cell, 18, 499-505.
-
(2005)
Mol. Cell
, vol.18
, pp. 499-505
-
-
Lehmann, A.R.1
Fuchs, R.P.2
-
23
-
-
0034785579
-
Physical and functional interactions of human DNA polymerase Z with PCNA
-
Haracska,L., Johnson,R.E., Unk,I., Phillips,B., Hurwitz,J., Prakash,L. and Prakash,S. (2001) Physical and functional interactions of human DNA polymerase Z with PCNA. Mol. Cell. Biol., 21, 7199-7206.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 7199-7206
-
-
Prakash, L.1
Prakash, S.2
-
24
-
-
0035807870
-
Targeting of human DNA polymerase i to the replication machinery via interaction with PCNA
-
Haracska,L., Johnson,R.E., Unk,I., Phillips,B.B., Hurwitz,J., Prakash,L. and Prakash,S. (2001) Targeting of human DNA polymerase i to the replication machinery via interaction with PCNA. Proc. Natl Acad. Sci. USA, 98, 14256-14261.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 14256-14261
-
-
Prakash, L.1
Prakash, S.2
-
25
-
-
9144258471
-
Proliferating cell nuclear antigen-dependent coordination of the biological functions of human DNA polymerase i
-
Vidal,A.E., Kannouche,P., Podust,V.N., Yang,W., Lehmann,A.R. and Woodgate,R. (2004) Proliferating cell nuclear antigen-dependent coordination of the biological functions of human DNA polymerase i. J. Biol. Chem., 279, 48360-48368.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 48360-48368
-
-
Lehmann, A.R.1
Woodgate, R.2
-
26
-
-
33845223494
-
Ubiquitin-binding motifs in REV1 protein are required for its role in the tolerance of DNA damage
-
Guo,C., Tang,T.S., Bienko,M., Parker,J.L., Bielen,A.B., Sonoda,E., Takeda,S., Ulrich,H.D., Dikic,I. and Friedberg,E.C. (2006) Ubiquitin-binding motifs in REV1 protein are required for its role in the tolerance of DNA damage. Mol. Cell. Biol., 26, 8892-8900.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 8892-8900
-
-
Dikic, I.1
Friedberg, E.C.2
-
27
-
-
67449103688
-
Structural basis for novel interactions between human translesion synthesis polymerases and proliferating cell nuclear antigen
-
Hishiki,A., Hashimoto,H., Hanafusa,T., Kamei,K., Ohashi,E., Shimizu,T., Ohmori,H. and Sato,M. (2009) Structural basis for novel interactions between human translesion synthesis polymerases and proliferating cell nuclear antigen. J. Biol. Chem., 284, 10552-10560.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 10552-10560
-
-
Ohmori, H.1
Sato, M.2
-
28
-
-
2442417331
-
Interaction of human DNA polymerase Z with monoubiquitinated PCNA; A possible mechanism for the polymerase switch in response to DNA damage
-
Kannouche,P.L., Wing,J. and Lehmann,A.R. (2004) Interaction of human DNA polymerase Z with monoubiquitinated PCNA; a possible mechanism for the polymerase switch in response to DNA damage. Mol. Cell, 14, 491-500.
-
(2004)
Mol. Cell
, vol.14
, pp. 491-500
-
-
Wing, J.1
Lehmann, A.R.2
-
29
-
-
6344288785
-
Rad18 guides polZ to replication stalling sites through physical interaction and PCNA monoubiquitination
-
Watanabe,K., Tateishi,S., Kawasuji,M., Tsurimoto,T., Inoue,H. and Yamaizumi,M. (2004) Rad18 guides polZ to replication stalling sites through physical interaction and PCNA monoubiquitination. EMBO J., 23, 3886-3896.
-
(2004)
EMBO J.
, vol.23
, pp. 3886-3896
-
-
Inoue, H.1
Yamaizumi, M.2
-
30
-
-
0037068455
-
RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO
-
Hoege,C., Pfander,B., Moldovan,G.L., Pyrowolakis,G. and Jentsch,S. (2002) RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature, 419, 135-141.
-
(2002)
Nature
, vol.419
, pp. 135-141
-
-
Pyrowolakis, G.1
Jentsch, S.2
-
31
-
-
29144499065
-
Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis
-
Bienko,M., Green,C.M., Crosetto,N., Rudolf,F., Zapart,G., Coull,B., Kannouche,P., Wider,G., Peter,M., Lehmann,A.R. et al. (2005) Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis. Science, 310, 1821-1824.
-
(2005)
Science
, vol.310
, pp. 1821-1824
-
-
Lehmann, A.R.1
-
32
-
-
33847338933
-
Structure of the ubiquitin-binding zinc finger domain of human DNA Y-polymerase Z
-
Bomar,M.G., Pai,M.T., Tzeng,S.R., Li,S.S. and Zhou,P. (2007) Structure of the ubiquitin-binding zinc finger domain of human DNA Y-polymerase Z. EMBO Rep., 8, 247-251.
-
(2007)
EMBO Rep.
, vol.8
, pp. 247-251
-
-
Zhou, P.1
-
33
-
-
33745581677
-
Controlling the subcellular localization of DNA polymerases i and Z via interactions with ubiquitin
-
Plosky,B.S., Vidal,A., Ferná ndez de Henestrosa,A.R., McLenigan,M.P., McDonald,J.P., Mead,S. and Woodgate,R. (2006) Controlling the subcellular localization of DNA polymerases i and Z via interactions with ubiquitin. EMBO J., 25, 2847-2855.
-
(2006)
EMBO J.
, vol.25
, pp. 2847-2855
-
-
Plosky, B.S.1
Vidal, A.2
Henestrosa, A.R.3
McLenigan, M.P.4
McDonald, J.P.5
Mead, S.6
Woodgate, R.7
-
34
-
-
75949107942
-
Unconventional ubiquitin recognition by the ubiquitin-binding motif within the y family DNA polymerases i and Rev1
-
Bomar,M.G., D'Souza,S., Bienko,M., Dikic,I., Walker,G.C. and Zhou,P. (2010) Unconventional ubiquitin recognition by the ubiquitin-binding motif within the Y family DNA polymerases i and Rev1. Mol. Cell, 37, 408-417.
-
(2010)
Mol. Cell
, vol.37
, pp. 408-417
-
-
Walker, G.C.1
Zhou, P.2
-
35
-
-
75949122886
-
Regulation of translesion synthesis DNA polymerase Z by monoubiquitination
-
Bienko,M., Green,C.M., Sabbioneda,S., Crosetto,N., Matic,I., Hibbert,R.G., Begovic,T., Niimi,A., Mann,M., Lehmann,A.R. et al. (2010) Regulation of translesion synthesis DNA polymerase Z by monoubiquitination. Mol. Cell, 37, 396-407.
-
(2010)
Mol. Cell
, vol.37
, pp. 396-407
-
-
Lehmann, A.R.1
-
36
-
-
18744413609
-
Localisation of DNA polymerases Z and i to the replication machinery is tightly co-ordinated in human cells
-
Kannouche,P., Ferná ndez de Henestrosa,A.R., Coull,B., Vidal,A., Gray,C., Zicha,D., Woodgate,R. and Lehmann,A.R. (2002) Localisation of DNA polymerases Z and i to the replication machinery is tightly co-ordinated in human cells. EMBO J., 21, 6246-6256.
-
(2002)
EMBO J.
, vol.21
, pp. 6246-6256
-
-
Kannouche, P.1
Henestrosa, A.R.2
Coull, B.3
Vidal, A.4
Gray, C.5
Zicha, D.6
Woodgate, R.7
Lehmann, A.R.8
-
37
-
-
58249106331
-
Effect of proliferating cell nuclear antigen ubiquitination and chromatin structure on the dynamic properties of the Y-family DNA polymerases
-
Sabbioneda,S., Gourdin,A.M., Green,C.M., Zotter,A., Giglia-Mari,G., Houtsmuller,A., Vermeulen,W. and Lehmann,A.R. (2008) Effect of proliferating cell nuclear antigen ubiquitination and chromatin structure on the dynamic properties of the Y-family DNA polymerases. Mol. Biol. Cell., 19, 5193-5202.
-
(2008)
Mol. Biol. Cell.
, vol.19
, pp. 5193-5202
-
-
Vermeulen, W.1
Lehmann, A.R.2
-
38
-
-
84866633921
-
The C-terminal domain of human Rev1 contains independent binding sites for DNA polymerase Z and Rev7 subunit of polymerase z
-
Pustovalova,Y., Bezsonova,I. and Korzhnev,D.M. (2012) The C-terminal domain of human Rev1 contains independent binding sites for DNA polymerase Z and Rev7 subunit of polymerase z. FEBS Lett., 586, 3051-3056.
-
(2012)
FEBS Lett.
, vol.586
, pp. 3051-3056
-
-
Bezsonova, I.1
Korzhnev, D.M.2
-
39
-
-
84863739595
-
NMR structure and dynamics of the C-terminal domain from human Rev1 and its complex with Rev1 interacting region of DNA polymerase Z
-
Pozhidaeva,A., Pustovalova,Y., D'Souza,S., Bezsonova,I., Walker,G.C. and Korzhnev,D.M. (2012) NMR structure and dynamics of the C-terminal domain from human Rev1 and its complex with Rev1 interacting region of DNA polymerase Z. Biochemistry, 51, 5506-5520.
-
(2012)
Biochemistry
, vol.51
, pp. 5506-5520
-
-
Walker, G.C.1
Korzhnev, D.M.2
-
40
-
-
84858998856
-
Simple and efficient purification of Escherichia coli DNA polymerase V: Cofactor requirements for optimal activity and processivity in vitro
-
Karata,K., Vaisman,A., Goodman,M.F. and Woodgate,R. (2012) Simple and efficient purification of Escherichia coli DNA polymerase V: cofactor requirements for optimal activity and processivity in vitro. DNA Repair, 11, 431-440.
-
(2012)
DNA Repair
, vol.11
, pp. 431-440
-
-
Goodman, M.F.1
Woodgate, R.2
-
41
-
-
84865091080
-
A strategy for the expression of recombinant proteins traditionally hard to purify
-
Frank,E.G., McDonald,J.P., Karata,K., Huston,D. and Woodgate,R. (2012) A strategy for the expression of recombinant proteins traditionally hard to purify. Anal. Biochem., 429, 132-139.
-
(2012)
Anal. Biochem.
, vol.429
, pp. 132-139
-
-
Huston, D.1
Woodgate, R.2
-
42
-
-
78651380166
-
Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin
-
Burschowsky,D., Rudolf,F., Rabut,G., Herrmann,T., Peter,M. and Wider,G. (2011) Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin. J. Biol. Chem., 286, 1364-1373.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 1364-1373
-
-
Peter, M.1
Wider, G.2
-
43
-
-
0000242262
-
Xeroderma pigmentosum cells with normal levels of excision repair have a defect in DNA synthesis after UV-irradiation
-
Lehmann,A.R., Kirk-Bell,S., Arlett,C.F., Paterson,M.C., Lohman,P.H., de Weerd-Kastelein,E.A. and Bootsma,D. (1975) Xeroderma pigmentosum cells with normal levels of excision repair have a defect in DNA synthesis after UV-irradiation. Proc. Natl Acad. Sci. USA, 72, 219-223.
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 219-223
-
-
Kastelein, E.A.1
Bootsma, D.2
|