A dual-luciferase reporter system for studying recoding signals

RNA

Volumn 4, Issue 4, 1998, Pages 479-486

  Grentzmann, Guido ^a   Ingram, Jennifer A ^a   Kelly, Paul J ^b   Gesteland, Raymond F ^a,b   Atkins, John F ^b  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

Antizyme; Frameshift; HIV; MMTV; MULV; Readthrough; Ribosome; Translation

Indexed keywords

LUCIFERASE; MESSENGER RNA; RNA POLYMERASE; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REPORTER GENE; RETROVIRUS; RIBOSOMAL FRAMESHIFTING; RNA TRANSLATION; VIRAL GENETICS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BEETLES; CNIDARIA; FUSION PROTEINS, GAG-POL; GENES, REPORTER; GENETIC CODE; GENETIC VECTORS; HIV-1; HUMANS; LUCIFERASES; MAMMARY TUMOR VIRUS, MOUSE; MOLECULAR SEQUENCE DATA; ORNITHINE DECARBOXYLASE; PROTEIN BIOSYNTHESIS; READING FRAMES; SIMIAN VIRUS 40;

EID: 0031922812     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Berry MJ, Banu L, Harney JW, Larsen PR. 1993. Functional characterization of the eukaryotic SECIS elements which direct seleno-cysteine insertion at UGA codons. EMBO J 12:3315-3322.
2. Bidou L, Stahl G, Grima B, Liu H, Cassan M, Roussel JP. 1997. In vivo HIV-1 frameshifting efficiency is directly related to the stability of the stem-loop stimulatory signal. RNA 3:1153-1158.
3. Bock A, Forchhammer K, Heider J, Baron C. 1991. Selenoprotein synthesis: An expansion of the genetic code. Trends Biochem Sci 16:463-467.
4. Brierley I. 1995. Ribosomal frameshifting on viral RNAs. J Gen Virol 76:1885-1892.
5. Cassan M, Berteaux V, Angrand PO, Rousset JP. 1990. Expression vectors for quantitating in vivo translational ambiguity: Their potential use to analyse frameshifting at the HIV gag-pol junction. Res Virol 141:597-610.
6. Enssle J, Jordan I, Mauer B, Rethwilm A. 1996. Foamy virus reverse transcriptase is expressed independently from the gag protein. Proc Natl Acad Sci USA 93:4137-4141.
7. Feng YX, Copeland TD, Oroszlan S, Rein A, Levin JG. 1990. Identification of amino acids inserted during suppression of UAA and UGA termination codons at the gag-pol junction of Moloney Murine leukemia virus. Proc Natl Acad Sci USA 87:8860-8863.
8. Gesteland RF, Atkins J. 1996. Recoding: Dynamic reprogramming of translation. Annu Rev Biochem 65:741-768.
9. Hayashi S, Murakami Y, Matsufuji S. 1996. Ornithine decarboxylase antizyme: A novel type of regulatory protein. Trends Biochem Sci 21:27-30.
10. Jacks T, Power MD, Masiarz FR, Luciw PA, Barr PJ, Varmus HE. 1988. Characterization of ribosomal frameshifting in HIV-1 gag-pol expression. Nature 331:280-283.
11. Jacks T, Townsley K, Varmus HE, Majors J. 1987. Two efficient ribosomal frameshifting events are required for synthesis of mouse mammary tumor virus gag-related polyproteins. Proc Natl Acad Sci USA 84:4298-4302.
12. Kurland CG, Hughes D, Ehrenberg M. 1996. Limitations of translational accuracy. In: Neidhardt FC, Curtiss R, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE, eds. Escherichia coli and Salmonella typhimurium. Cellular and molecular biology, 2nd ed. pp 979-1004.
13. Low SC, Berry MJ. 1996. Knowing when not to stop: Selenocysteine incorporation in eukaryotes. Trends Biochem Sci 21:203-208.
14. Manley JL. 1978. Synthesis and degradation of termination and premature-termination fragments of β-galactosidase in vitro and in vivo. J Mol Biol 125:407-432.
15. Martin R, Mogg AE, Heywood LA, Nitschke L, Burke JF. 1989. Aminoglycoside suppression at UAG, UAA and UGA codons in Escherichia coli and human tissue culture cells. Mol Gen Genet 217:411-418.
16. Matsufuji S, Matsufuji T, Miyazaki Y, Murakami Y, Atkins JF, Gesteland RF, Hayashi S. 1995. Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme. Cell 80: 51-60.
17. Matsufuji S, Matsufuji T, Wills NM, Gesteland RF, Atkins JF. 1996. Reading two bases twice: Mammalian antizyme frameshifting in yeast. EMBO J 15:1360-1370.
18. Miller WA, Brown CM, Wang S. 1997. New punctuation for the genetic code: Luteovirus gene expression. Sem Virol 8:3-13.
19. Moore R, Dixon M, Smith R, Peters G, Dickson C. 1987. Complete nucleotide sequence of a milk-transmitted mouse mammary tumor virus: Two frameshift suppression events are required for translation of gag and pol. J Virol 61:480-490.
20. Parkin NT, Chamorro M, Varmus HE. 1992. Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: Demonstration by expression in vivo. J Virol 66:5147-5151.
21. Reil H, Hauser H. 1990. Test system for determination of HIV-1 frameshifting efficiency in animal cells. Biochim Biophys Acta 1050:288-292.
22. Reil H, Kollmus H, Weidle UH, Hauser H. 1993. A heptanucleotide sequence mediates ribosomal frameshifting in mammalian cells. J Virol 67:5579-5584.
23. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: A laboratory manual, 2nd ed. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
24. Somogyi P, Jenner AJ, Brierley I, Inglis SC. 1993. Ribosomal pausing during translation of an RNA pseudoknot. Mol Cell Biol 13:6931-6940.
25. Stahl G, Bidou L, Rousset JP, Cassan M. 1995. Versatile vectors to study recoding: Conservation of rules between yeast and mammalian cells. Nucleic Acids Res 23:1557-1560.
26. Tu C, Tzeng TH, Bruenn JA. 1992. Ribosomal movement impeded at a pseudoknot required for frameshifting. Proc Natl Acad Sci USA 89:8636-8640.
27. Wills NM, Gesteland RF, Atkins JF. 1991. Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon Proc Natl Acad Sci USA 88:6991-6995.
28. Yoshinaka Y, Katoh I, Copeland TD, Oroszlan S. 1985. Murine leukemia virus protease is encoded by the gag-pol gene and is synthesized through suppression of an amber termination codon. Proc Natl Acad Sci USA 82:1618-1622.