NetAffix gene ontology mining tool: A visual approach for microarray data analysis

Bioinformatics

Volumn 20, Issue 9, 2004, Pages 1462-1463

  Cheng, Jill ^a   Sun, Shaw ^a   Tracy, Adam ^a   Hubbell, Earl ^a   Morris, Joseph ^a   Valmeekam, Venu ^a   Kimbrough, Andrew ^a   Cline, Melissa S ^a   Liu, Guoying ^a   Shigeta, Ron ^a   Kulp, David ^a   Siani Rose, Michael A ^a  

^a Affymetrix Corporation   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RETINOIC ACID;

CELL DIFFERENTIATION; COLOR; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; DATA ANALYSIS; DNA MICROARRAY; GENE EXPRESSION; GENE MAPPING; INTERNET; MEASUREMENT; MYELOID PROGENITOR CELL; PRIORITY JOURNAL; REVIEW; SCORING SYSTEM; ALGORITHM; ARTICLE; DATA BASE; DOCUMENTATION; EVALUATION; GENE EXPRESSION PROFILING; INFORMATION RETRIEVAL; METHODOLOGY; NATURAL LANGUAGE PROCESSING;

ABSTRACTING AND INDEXING; ALGORITHMS; COMPUTER GRAPHICS; DATABASE MANAGEMENT SYSTEMS; DOCUMENTATION; GENE EXPRESSION PROFILING; INFORMATION STORAGE AND RETRIEVAL; NATURAL LANGUAGE PROCESSING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 3142750599     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth087     Document Type: Review

References (5)

1. Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
2. Awad,T.A., Finkelstein,D. et al. (2004) Time course analysis of gene expression during retinoid-induced neutrophil differentiation and apoptosis (in press).
3. Cheng,J., Cline,M. et al. (2004) A knowledge-based clustering algorithm driven by gene ontology. J. Biopharm. Stat., in press.
4. Liu,G., Loraine,A.E., Shigeta,R., Cline,M., Cheng,J., Valmeekam,V., Sun,S., Kulp.D. and Siani-Rose,M.A. (2003) NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res., 31, 82-86.
5. Tenen,D.G., Hromas,R., Licht,J.D. and Zhang,D.E. (1997) Transcription factors, normal myeloid development, and leukemia. Blood, 90, 489-519.