메뉴 건너뛰기




Volumn 101, Issue 3, 2013, Pages 178-186

Functional insights into the core-TFIIH from a comparative survey

Author keywords

Comparative genomic analysis; P34; Repair; Splicing; TFIIH; Transcription

Indexed keywords

CORE PROTEIN; CYCLIN DEPENDENT KINASE ACTIVATING KINASE; MESSENGER RNA; MULTIPROTEIN COMPLEX; PROTEIN P34; PROTEIN P44; PROTEIN P52; PROTEIN P62; PROTEIN P8; TRANSCRIPTION FACTOR IIH; UNCLASSIFIED DRUG; XERODERMA PIGMENTOSUM GROUP B PROTEIN; XERODERMA PIGMENTOSUM GROUP D PROTEIN;

EID: 84873522076     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2012.11.003     Document Type: Article
Times cited : (13)

References (50)
  • 1
    • 0141561892 scopus 로고    scopus 로고
    • The transcriptional complexity of the TFIIH complex
    • Zurita M., Merino C. The transcriptional complexity of the TFIIH complex. Trends Genet. 2003, 19:578-584.
    • (2003) Trends Genet. , vol.19 , pp. 578-584
    • Zurita, M.1    Merino, C.2
  • 2
    • 0034307172 scopus 로고    scopus 로고
    • Dynamic association of capping enzymes with transcribing RNA polymerase II
    • Schroeder S.C., Schwer B., Shuman S., Bentley D. Dynamic association of capping enzymes with transcribing RNA polymerase II. Genes Dev. 2000, 14:2435-2440.
    • (2000) Genes Dev. , vol.14 , pp. 2435-2440
    • Schroeder, S.C.1    Schwer, B.2    Shuman, S.3    Bentley, D.4
  • 5
    • 38649096939 scopus 로고    scopus 로고
    • A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo
    • Damgaard C.K., Kahns S., Lykke-Andersen S., Nielsen A.L., Jensen T.H., Kjems J. A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo. Mol. Cell 2008, 29:271-278.
    • (2008) Mol. Cell , vol.29 , pp. 271-278
    • Damgaard, C.K.1    Kahns, S.2    Lykke-Andersen, S.3    Nielsen, A.L.4    Jensen, T.H.5    Kjems, J.6
  • 6
    • 70149118362 scopus 로고    scopus 로고
    • Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome
    • Hong S.W., Hong S.M., Yoo J.W., Lee Y.C., Kim S., Lis J.T., Lee D.K. Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:14276-14280.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 14276-14280
    • Hong, S.W.1    Hong, S.M.2    Yoo, J.W.3    Lee, Y.C.4    Kim, S.5    Lis, J.T.6    Lee, D.K.7
  • 7
    • 33750294001 scopus 로고    scopus 로고
    • TFIIH trafficking and its nuclear assembly during early Drosophila embryo development
    • Aguilar-Fuentes J., Valadez-Graham V., Reynaud E., Zurita M. TFIIH trafficking and its nuclear assembly during early Drosophila embryo development. J. Cell Sci. 2006, 119:3866-3875.
    • (2006) J. Cell Sci. , vol.119 , pp. 3866-3875
    • Aguilar-Fuentes, J.1    Valadez-Graham, V.2    Reynaud, E.3    Zurita, M.4
  • 8
    • 46349091030 scopus 로고    scopus 로고
    • Nucleotide excision repair driven by the dissociation of CAK from TFIIH
    • Coin F., Oksenych V., Mocquet V., Groh S., Blattner C., Egly J.M. Nucleotide excision repair driven by the dissociation of CAK from TFIIH. Mol. Cell 2008, 31:9-20.
    • (2008) Mol. Cell , vol.31 , pp. 9-20
    • Coin, F.1    Oksenych, V.2    Mocquet, V.3    Groh, S.4    Blattner, C.5    Egly, J.M.6
  • 9
    • 78751572692 scopus 로고    scopus 로고
    • The evolution and mechanisms of nucleotide excision repair proteins
    • Rouillon C., White M.F. The evolution and mechanisms of nucleotide excision repair proteins. Res. Microbiol. 2011, 162:19-26.
    • (2011) Res. Microbiol. , vol.162 , pp. 19-26
    • Rouillon, C.1    White, M.F.2
  • 10
    • 3042703022 scopus 로고    scopus 로고
    • Identification of TFB5, a new component of general transcription and DNA repair factor IIH
    • Ranish J.A., Hahn S., Lu Y., Yi E.C., Li X.J., Eng J., Aebersold R. Identification of TFB5, a new component of general transcription and DNA repair factor IIH. Nat. Genet. 2004, 36:707-713.
    • (2004) Nat. Genet. , vol.36 , pp. 707-713
    • Ranish, J.A.1    Hahn, S.2    Lu, Y.3    Yi, E.C.4    Li, X.J.5    Eng, J.6    Aebersold, R.7
  • 11
    • 34247513888 scopus 로고    scopus 로고
    • Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair
    • Coin F., Oksenych V., Egly J.M. Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair. Mol. Cell 2007, 26:245-256.
    • (2007) Mol. Cell , vol.26 , pp. 245-256
    • Coin, F.1    Oksenych, V.2    Egly, J.M.3
  • 12
    • 0035895435 scopus 로고    scopus 로고
    • Dissecting the interaction network of multiprotein complexes by pairwise coexpression of subunits in E. coli
    • Fribourg S., Romier C., Werten S., Gangloff Y.G., Poterszman A., Moras D. Dissecting the interaction network of multiprotein complexes by pairwise coexpression of subunits in E. coli. J. Mol. Biol. 2001, 306:363-373.
    • (2001) J. Mol. Biol. , vol.306 , pp. 363-373
    • Fribourg, S.1    Romier, C.2    Werten, S.3    Gangloff, Y.G.4    Poterszman, A.5    Moras, D.6
  • 14
    • 8544258091 scopus 로고    scopus 로고
    • Domain architecture of the p62 subunit from the human transcription/repair factor TFIIH deduced by limited proteolysis and mass spectrometry analysis
    • Jawhari A., Boussert S., Lamour V., Atkinson R.A., Kieffer B., Poch O., Potier N., van Dorsselaer A., Moras D., Poterszman A. Domain architecture of the p62 subunit from the human transcription/repair factor TFIIH deduced by limited proteolysis and mass spectrometry analysis. Biochemistry 2004, 43:14420-14430.
    • (2004) Biochemistry , vol.43 , pp. 14420-14430
    • Jawhari, A.1    Boussert, S.2    Lamour, V.3    Atkinson, R.A.4    Kieffer, B.5    Poch, O.6    Potier, N.7    van Dorsselaer, A.8    Moras, D.9    Poterszman, A.10
  • 15
    • 0036535440 scopus 로고    scopus 로고
    • BSD: a novel domain in transcription factors and synapse-associated proteins
    • Doerks T., Huber S., Buchner E., Bork P. BSD: a novel domain in transcription factors and synapse-associated proteins. Trends Biochem. Sci. 2002, 27:168-170.
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 168-170
    • Doerks, T.1    Huber, S.2    Buchner, E.3    Bork, P.4
  • 17
    • 0028925910 scopus 로고
    • An interaction between the Tfb1 and Ssl1 subunits of yeast TFIIH correlates with DNA repair activity
    • Matsui P., DePaulo J., Buratowski S. An interaction between the Tfb1 and Ssl1 subunits of yeast TFIIH correlates with DNA repair activity. Nucleic Acids Res. 1995, 23:767-772.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 767-772
    • Matsui, P.1    DePaulo, J.2    Buratowski, S.3
  • 18
    • 0035920181 scopus 로고    scopus 로고
    • A role of the C-terminal part of p44 in the promoter escape activity of transcription factor IIH
    • Tremeau-Bravard A., Perez C., Egly J.M. A role of the C-terminal part of p44 in the promoter escape activity of transcription factor IIH. J. Biol. Chem. 2001, 276:27693-27697.
    • (2001) J. Biol. Chem. , vol.276 , pp. 27693-27697
    • Tremeau-Bravard, A.1    Perez, C.2    Egly, J.M.3
  • 19
    • 25444456367 scopus 로고    scopus 로고
    • Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes
    • Callebaut I., Prat K., Meurice E., Mornon J.P., Tomavo S. Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes. BMC Genomics 2005, 6:100.
    • (2005) BMC Genomics , vol.6 , pp. 100
    • Callebaut, I.1    Prat, K.2    Meurice, E.3    Mornon, J.P.4    Tomavo, S.5
  • 21
    • 67649870625 scopus 로고    scopus 로고
    • Transcriptionally active TFIIH of the early-diverged eukaryote Trypanosoma brucei harbors two novel core subunits but not a cyclin-activating kinase complex
    • Lee J.H., Jung H.S., Gunzl A. Transcriptionally active TFIIH of the early-diverged eukaryote Trypanosoma brucei harbors two novel core subunits but not a cyclin-activating kinase complex. Nucleic Acids Res. 2009, 37:3811-3820.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 3811-3820
    • Lee, J.H.1    Jung, H.S.2    Gunzl, A.3
  • 22
    • 4444340288 scopus 로고    scopus 로고
    • Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia
    • Best A.A., Morrison H.G., McArthur A.G., Sogin M.L., Olsen G.J. Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia. Genome Res. 2004, 14:1537-1547.
    • (2004) Genome Res. , vol.14 , pp. 1537-1547
    • Best, A.A.1    Morrison, H.G.2    McArthur, A.G.3    Sogin, M.L.4    Olsen, G.J.5
  • 29
    • 60349104299 scopus 로고    scopus 로고
    • The spliceosome: design principles of a dynamic RNP machine
    • Wahl M.C., Will C.L., Luhrmann R. The spliceosome: design principles of a dynamic RNP machine. Cell 2009, 136:701-718.
    • (2009) Cell , vol.136 , pp. 701-718
    • Wahl, M.C.1    Will, C.L.2    Luhrmann, R.3
  • 31
    • 0032855103 scopus 로고    scopus 로고
    • The TFB4 subunit of yeast TFIIH is required for both nucleotide excision repair and RNA polymerase II transcription
    • Feaver W.J., Huang W., Friedberg E.C. The TFB4 subunit of yeast TFIIH is required for both nucleotide excision repair and RNA polymerase II transcription. J. Biol. Chem. 1999, 274:29564-29567.
    • (1999) J. Biol. Chem. , vol.274 , pp. 29564-29567
    • Feaver, W.J.1    Huang, W.2    Friedberg, E.C.3
  • 33
    • 77957354585 scopus 로고    scopus 로고
    • Methylated H3K4, a transcription-associated histone modification, is involved in the DNA damage response pathway
    • Faucher D., Wellinger R.J. Methylated H3K4, a transcription-associated histone modification, is involved in the DNA damage response pathway. PLoS Genet. 2010, 6.
    • (2010) PLoS Genet. , vol.6
    • Faucher, D.1    Wellinger, R.J.2
  • 34
    • 33750958297 scopus 로고    scopus 로고
    • Altering nucleosomes during DNA double-strand break repair in yeast
    • Osley M.A., Shen X. Altering nucleosomes during DNA double-strand break repair in yeast. Trends Genet. 2006, 22:671-677.
    • (2006) Trends Genet. , vol.22 , pp. 671-677
    • Osley, M.A.1    Shen, X.2
  • 35
    • 34247172850 scopus 로고    scopus 로고
    • Histone modifications in response to DNA damage
    • Altaf M., Saksouk N., Cote J. Histone modifications in response to DNA damage. Mutat. Res. 2007, 618:81-90.
    • (2007) Mutat. Res. , vol.618 , pp. 81-90
    • Altaf, M.1    Saksouk, N.2    Cote, J.3
  • 36
    • 79960343567 scopus 로고    scopus 로고
    • Regulation of endonuclease activity in human nucleotide excision repair
    • Fagbemi A.F., Orelli B., Scharer O.D. Regulation of endonuclease activity in human nucleotide excision repair. DNA Repair (Amst) 2011, 10:722-729.
    • (2011) DNA Repair (Amst) , vol.10 , pp. 722-729
    • Fagbemi, A.F.1    Orelli, B.2    Scharer, O.D.3
  • 37
    • 0142247085 scopus 로고    scopus 로고
    • Trans and cis splicing in trypanosomatids: mechanism, factors, and regulation
    • Liang X.H., Haritan A., Uliel S., Michaeli S. trans and cis splicing in trypanosomatids: mechanism, factors, and regulation. Eukaryot. Cell 2003, 2:830-840.
    • (2003) Eukaryot. Cell , vol.2 , pp. 830-840
    • Liang, X.H.1    Haritan, A.2    Uliel, S.3    Michaeli, S.4
  • 38
    • 77956841596 scopus 로고    scopus 로고
    • The pre-mRNA splicing machinery of trypanosomes: complex or simplified?
    • Gunzl A. The pre-mRNA splicing machinery of trypanosomes: complex or simplified?. Eukaryot. Cell 2010, 9:1159-1170.
    • (2010) Eukaryot. Cell , vol.9 , pp. 1159-1170
    • Gunzl, A.1
  • 40
    • 77953242243 scopus 로고    scopus 로고
    • Efficient transcription through an intron requires the binding of an Sm-type U1 snRNP with intact stem loop II to the splice donor
    • Alexander M.R., Wheatley A.K., Center R.J., Purcell D.F. Efficient transcription through an intron requires the binding of an Sm-type U1 snRNP with intact stem loop II to the splice donor. Nucleic Acids Res. 2010, 38(9):3041-3053.
    • (2010) Nucleic Acids Res. , vol.38 , Issue.9 , pp. 3041-3053
    • Alexander, M.R.1    Wheatley, A.K.2    Center, R.J.3    Purcell, D.F.4
  • 45
    • 67349205556 scopus 로고    scopus 로고
    • In new company: U1 snRNA associates with TAF15
    • Kugel J.F., Goodrich J.A. In new company: U1 snRNA associates with TAF15. EMBO Rep. 2009, 10:454-456.
    • (2009) EMBO Rep. , vol.10 , pp. 454-456
    • Kugel, J.F.1    Goodrich, J.A.2
  • 46
    • 79960377780 scopus 로고    scopus 로고
    • A history of TFIIH: two decades of molecular biology on a pivotal transcription/repair factor
    • Egly J.M., Coin F. A history of TFIIH: two decades of molecular biology on a pivotal transcription/repair factor. DNA Repair (Amst) 2011, 10:714-721.
    • (2011) DNA Repair (Amst) , vol.10 , pp. 714-721
    • Egly, J.M.1    Coin, F.2
  • 49
    • 78650991450 scopus 로고    scopus 로고
    • OrthoInspector: comprehensive orthology analysis and visual exploration
    • Linard B., Thompson J.D., Poch O., Lecompte O. OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinforma. 2011, 11.
    • (2011) BMC Bioinforma. , pp. 11
    • Linard, B.1    Thompson, J.D.2    Poch, O.3    Lecompte, O.4
  • 50
    • 38049148026 scopus 로고    scopus 로고
    • DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    • Sherman B.T., Huang da W., Tan Q., Guo Y., Bour S., Liu D., Stephens R., Baseler M.W., Lane H.C., Lempicki R.A. DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinforma. 2007, 8:426.
    • (2007) BMC Bioinforma. , vol.8 , pp. 426
    • Sherman, B.T.1    Huang da, W.2    Tan, Q.3    Guo, Y.4    Bour, S.5    Liu, D.6    Stephens, R.7    Baseler, M.W.8    Lane, H.C.9    Lempicki, R.A.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.