-
1
-
-
84857780876
-
Evidence for network evolution in an arabidopsis interactome map
-
Arabidopsis Interactome Mapping Consortium
-
Arabidopsis Interactome Mapping Consortium. 2011. Evidence for network evolution in an Arabidopsis interactome map. Science 333: 601-607.
-
(2011)
Science
, vol.333
, pp. 601-607
-
-
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. 2000. Gene Ontology: Tool for the unification of biology. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
3
-
-
79551658804
-
Finding undetected protein associations in cell signaling by belief propagation
-
Bailly-Bechet M, Borgs C, Braunstein A, Chayes J, Dagkessamanskaia A, Francxois J-M, Zecchina R. 2011. Finding undetected protein associations in cell signaling by belief propagation. Proc Natl Acad Sci 108: 882-887.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 882-887
-
-
Bailly-Bechet, M.1
Borgs, C.2
Braunstein, A.3
Chayes, J.4
Dagkessamanskaia, A.5
Francxois, J.-.M.6
Zecchina, R.7
-
4
-
-
16344369007
-
Clustering of gene expression data using a local shape-based similarity measure
-
Balasubramaniyan R, Hullermeier E, Weskamp N, Kamper J. 2005. Clustering of gene expression data using a local shape-based similarity measure. Bioinformatics 21: 1069-1077.
-
(2005)
Bioinformatics
, vol.21
, pp. 1069-1077
-
-
Balasubramaniyan, R.1
Hullermeier, E.2
Weskamp, N.3
Kamper, J.4
-
6
-
-
84984933073
-
Structure and function of a transcriptional network activated by the mapk hog1
-
Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, Friedman N, O'Shea EK. 2008. Structure and function of a transcriptional network activated by the MAPK Hog1. Nat Genet 40: 1300-1306.
-
(2008)
Nat Genet
, vol.40
, pp. 1300-1306
-
-
Capaldi, A.P.1
Kaplan, T.2
Liu, Y.3
Habib, N.4
Regev, A.5
Friedman, N.6
O'Shea, E.K.7
-
7
-
-
58149199573
-
Virusmint: A viral protein interaction database
-
Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, et al. 2009. VirusMINT: A viral protein interaction database. Nucleic Acids Res 37: D669-D673.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chatr-aryamontri, A.1
Ceol, A.2
Peluso, D.3
Nardozza, A.4
Panni, S.5
Sacco, F.6
Tinti, M.7
Smolyar, A.8
Castagnoli, L.9
Vidal, M.10
-
8
-
-
75649108602
-
Multilayered control of gene expression by stressactivated protein kinases
-
de Nadal E, Posas F. 2010. Multilayered control of gene expression by stressactivated protein kinases. EMBO J 29: 4-13.
-
(2010)
EMBO J
, vol.29
, pp. 4-13
-
-
De Nadal, E.1
Posas, F.2
-
9
-
-
33846521053
-
Reconstructing dynamic regulatory maps
-
doi: 10.1038/msb4100115
-
Ernst J, Vainas O, Harbison CT, Simon I, Bar-Joseph Z. 2007. Reconstructing dynamic regulatory maps. Mol Syst Biol 3: 74. doi: 10.1038/msb4100115.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 74
-
-
Ernst, J.1
Vainas, O.2
Harbison, C.T.3
Simon, I.4
Bar-Joseph, Z.5
-
10
-
-
41849115550
-
A semisupervised method for predicting transcription factor-gene interactions in escherichia coli
-
doi: 10.1371/journal. pcbi.1000044
-
Ernst J, Beg QK, Kay KA, Balázsi G, Oltvai ZN, Bar-Joseph Z. 2008. A semisupervised method for predicting transcription factor-gene interactions in Escherichia coli. PLoS Comput Biol 4: e1000044. doi: 10.1371/journal. pcbi.1000044.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Ernst, J.1
Beg, Q.K.2
Kay, K.A.3
Balázsi, G.4
Oltvai, Z.N.5
Bar-Joseph, Z.6
-
11
-
-
33751195256
-
Topological basis of signal integration in the transcriptional-regulatory network of the yeast, saccharomyces cerevisiae
-
doi: 10.1186/1471-2105-7-478
-
Farkas IJ, Wu C, Chennubhotla C, Bahar I, Oltvai ZN. 2006. Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae. BMC Bioinformatics 7: 478. doi: 10.1186/1471-2105-7-478.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 478
-
-
Farkas, I.J.1
Wu, C.2
Chennubhotla, C.3
Bahar, I.4
Oltvai, Z.N.5
-
12
-
-
58149200940
-
Human immunodeficiency virus type 1, human protein interaction database at ncbi
-
Fu W, Sanders-Beer BE, Katz KS, Maglott DR, Pruitt KD, Ptak RG. 2009. Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Res 37: D417-D422.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Fu, W.1
Sanders-Beer, B.E.2
Katz, K.S.3
Maglott, D.R.4
Pruitt, K.D.5
Ptak, R.G.6
-
13
-
-
0033637153
-
Genomic expressionprograms inthe response of yeast cells to environmental changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, BotsteinD, Brown PO. 2000. Genomic expressionprograms inthe response of yeast cells to environmental changes. Mol Biol Cell 11: 4241-4257.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
BotsteinD Brown, P.O.7
-
14
-
-
0037173615
-
Functional profiling of the saccharomyces cerevisiae genome
-
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418: 387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
-
15
-
-
67650663220
-
Backup in gene regulatory networks explains differences between binding and knockout results
-
doi: 10.1038/msb. 2009 33
-
Gitter A, Siegfried Z, Klutstein M, Fornes O, Oliva B, Simon I, Bar-Joseph Z. 2009. Backup in gene regulatory networks explains differences between binding and knockout results. Mol Syst Biol 5: 276. doi: 10.1038/msb.2009.33.
-
(2009)
Mol Syst Biol
, vol.5
, Issue.276
-
-
Gitter, A.1
Siegfried, Z.2
Klutstein, M.3
Fornes, O.4
Oliva, B.5
Simon, I.6
Bar-Joseph, Z.7
-
16
-
-
79952112240
-
Computational methods for analyzing dynamic regulatory networks
-
Gitter A, Lu Y, Bar-Joseph Z. 2010. Computational methods for analyzing dynamic regulatory networks. Methods Mol Biol 674: 419-441.
-
(2010)
Methods Mol Biol
, vol.674
, pp. 419-441
-
-
Gitter, A.1
Lu, Y.2
Bar-Joseph, Z.3
-
17
-
-
79952321999
-
Discovering pathways by orienting edges in protein interaction networks
-
doi: 10.1093/nar/gkq1207
-
Gitter A, Klein-Seetharaman J, Gupta A, Bar-Joseph Z. 2011. Discovering pathways by orienting edges in protein interaction networks. Nucleic Acids Res 39: e22. doi: 10.1093/nar/gkq1207.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gitter, A.1
Klein-Seetharaman, J.2
Gupta, A.3
Bar-Joseph, Z.4
-
18
-
-
78650116700
-
Inference of hierarchical regulatory network of estrogen-dependent breast cancer through chip-based data
-
doi: 10.1186/1752-0509-4-170
-
Gu F, Hsu H-K, Hsu P-Y, Wu J, Ma Y, Parvin J, Huang Tim, Jin V. 2010. Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data. BMC Syst Biol 4: 170. doi: 10.1186/1752-0509-4-170.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 170
-
-
Gu, F.1
Hsu, H.-.K.2
Hsu, P.-.Y.3
Wu, J.4
Ma, Y.5
Parvin, J.6
Huang, T.7
Jin, V.8
-
19
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne J-B, Reynolds DB, Yoo J, et al. 2004. Transcriptional regulatory code of a eukaryotic genome. Nature 431: 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.-.B.8
Reynolds, D.B.9
Yoo, J.10
-
20
-
-
42349100173
-
The chemical genomic portrait of yeast: Uncovering a phenotype for all genes
-
Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St. Onge RP, Tyers M, Koller D, et al. 2008. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science 320: 362-365.
-
(2008)
Science
, vol.320
, pp. 362-365
-
-
Hillenmeyer, M.E.1
Fung, E.2
Wildenhain, J.3
Pierce, S.E.4
Hoon, S.5
Lee, W.6
Proctor, M.7
St. Onge, R.P.8
Tyers, M.9
Koller, D.10
-
21
-
-
71149097450
-
Control of high osmolarity signalling in the yeast saccharomyces cerevisiae
-
Hohmann S. 2009. Control of high osmolarity signalling in the yeast Saccharomyces cerevisiae. FEBS Lett 583: 4025-4029.
-
(2009)
FEBS Lett
, vol.583
, pp. 4025-4029
-
-
Hohmann, S.1
-
23
-
-
70350452746
-
Integration of proteomic, transcriptional, and interactome data reveals hidden signaling components
-
doi: 10.1126/scisignal.2000350
-
Huang SC, Fraenkel E. 2009. Integration of proteomic, transcriptional, and interactome data reveals hidden signaling components. Sci Signal 2: ra40. doi: 10.1126/scisignal.2000350.
-
(2009)
Sci Signal
, vol.2
-
-
Huang, S.C.1
Fraenkel, E.2
-
24
-
-
77954147517
-
Using genereg to construct time delay gene regulatory networks
-
doi: 10.1186/1756-0500-3-142
-
Huang Tao, Liu L, Qian Z, Tu K, Li Y, Xie L. 2010. Using GeneReg to construct time delay gene regulatory networks. BMC Res Notes 3: 142. doi: 10.1186/1756-0500-3-142.
-
(2010)
BMC Res Notes
, vol.3
, pp. 142
-
-
Tao, H.1
Liu, L.2
Qian, Z.3
Tu, K.4
Li, Y.5
Xie, L.6
-
25
-
-
15044353444
-
Transcription control reprogramming in genetic backup circuits
-
Kafri R, Bar-Even A, Pilpel Y. 2005. Transcription control reprogramming in genetic backup circuits. Nat Genet 37: 295-299.
-
(2005)
Nat Genet
, vol.37
, pp. 295-299
-
-
Kafri, R.1
Bar-Even, A.2
Pilpel, Y.3
-
26
-
-
39549122441
-
Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy
-
Kafri R, Dahan O, Levy J, Pilpel Y. 2008. Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy. Proc Natl Acad Sci 105: 1243-1248.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 1243-1248
-
-
Kafri, R.1
Dahan, O.2
Levy, J.3
Pilpel, Y.4
-
27
-
-
0033982936
-
Kegg: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S. 2000. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
28
-
-
76749090540
-
Genome-wide rnai screen identifies human host factors crucial for influenza virus replication
-
Karlas A, Machuy N, Shin Y, Pleissner K-P, Artarini A, Heuer D, Becker D, Khalil H, Ogilvie LA, Hess S, et al. 2010. Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication. Nature 463: 818-822.
-
(2010)
Nature
, vol.463
, pp. 818-822
-
-
Karlas, A.1
Machuy, N.2
Shin, Y.3
Pleissner, K.-.P.4
Artarini, A.5
Heuer, D.6
Becker, D.7
Khalil, H.8
Ogilvie, L.A.9
Hess, S.10
-
29
-
-
76749108989
-
Human host factors required for influenza virus replication
-
Konig R, Stertz S, Zhou Y, Inoue A, Hoffmann H-H, Bhattacharyya S, Alamares JG, Tscherne DM, Ortigoza MB, Liang Y, et al. 2010. Human host factors required for influenza virus replication. Nature 463: 813-817.
-
(2010)
Nature
, vol.463
, pp. 813-817
-
-
Konig, R.1
Stertz, S.2
Zhou, Y.3
Inoue, A.4
Hoffmann, H.-.H.5
Bhattacharyya, S.6
Alamares, J.G.7
Tscherne, D.M.8
Ortigoza, M.B.9
Liang, Y.10
-
30
-
-
67650841319
-
Robustness and fragility in the yeast high osmolarity glycerol (hog) signal-transduction pathway
-
doi: 10.1038/msb.200936
-
Krantz M, Ahmadpour D, Ottosson L-G, Warringer J, Waltermann C, Nordlander B, Klipp E, Blomberg A, Hohmann S, Kitano H. 2009. Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway. Mol Syst Biol 5: 281. doi: 10.1038/msb.2009.36.
-
(2009)
Mol Syst Biol
, vol.5
, Issue.281
-
-
Krantz, M.1
Ahmadpour, D.2
Ottosson, L.-.G.3
Warringer, J.4
Waltermann, C.5
Nordlander, B.6
Klipp, E.7
Blomberg, A.8
Hohmann, S.9
Kitano, H.10
-
32
-
-
39849087243
-
A systematic approach to detecting transcription factors in response to environmental stresses
-
doi: 10.1186/1471-2105-8-473
-
Lin L-H, Lee H-C, Li W-H, Chen B-S. 2007. A systematic approach to detecting transcription factors in response to environmental stresses. BMC Bioinformatics 8: 473. doi: 10.1186/1471-2105-8-473.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 473
-
-
Lin, L.-.H.1
Lee, H.-.C.2
Li, W.-.H.3
Chen, B-.S.4
-
33
-
-
33645769260
-
An improved map of conserved regulatory sites for saccharomyces cerevisiae
-
doi: 10.1186/1471-2105-7-113
-
MacIsaac K, Wang T, Gordon DB, Gifford D, Stormo GD, Fraenkel E. 2006. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7: 113. doi: 10.1186/1471-2105-7-113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
MacIsaac, K.1
Wang, T.2
Gordon, D.B.3
Gifford, D.4
Stormo, G.D.5
Fraenkel, E.6
-
34
-
-
78650331647
-
Identification of functional elements and regulatory circuits by drosophila modencode
-
The modENCODE Consortium
-
The modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, et al. 2010. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330: 1787-1797.
-
(2010)
Science
, vol.330
, pp. 1787-1797
-
-
Roy, S.1
Ernst, J.2
Kharchenko, P.V.3
Kheradpour, P.4
Negre, N.5
Eaton, M.L.6
Landolin, J.M.7
Bristow, C.A.8
Ma, L.9
-
35
-
-
79960957705
-
Independently evolved virulence effectors converge onto hubs in a plant immune system network
-
Mukhtar MS, Carvunis A-R, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, et al. 2011. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science 333: 596-601.
-
(2011)
Science
, vol.333
, pp. 596-601
-
-
Mukhtar, M.S.1
Carvunis, A.-.R.2
Dreze, M.3
Epple, P.4
Steinbrenner, J.5
Moore, J.6
Tasan, M.7
Galli, M.8
Hao, T.9
Nishimura, M.T.10
-
36
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M. 2006. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127: 635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
37
-
-
34547830859
-
Spine: A framework for signaling-regulatory pathway inference from cause-effect experiments
-
Ourfali O, Shlomi T, Ideker T, Ruppin E, Sharan R. 2007. SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. Bioinformatics 23: i359-i366.
-
(2007)
Bioinformatics
, vol.23
-
-
Ourfali, O.1
Shlomi, T.2
Ideker, T.3
Ruppin, E.4
Sharan, R.5
-
38
-
-
76749100265
-
Network-free inference of knockout effects in yeast
-
doi: 10.1371/journal.pcbi.1000635
-
Peleg T, Yosef N, Ruppin E, Sharan R. 2010. Network-free inference of knockout effects in yeast. PLoS Comput Biol 6: e1000635. doi: 10.1371/journal.pcbi.1000635.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Peleg, T.1
Yosef, N.2
Ruppin, E.3
Sharan, R.4
-
39
-
-
77956855921
-
The highosmolarity glycerol (hog) and cell wall integrity (cwi) signalling pathways interplay: A yeast dialogue between mapk routes
-
Rodríguez-Pena JM, García R, Nombela C, Arroyo J. 2010. The highosmolarity glycerol (HOG) and cell wall integrity (CWI) signalling pathways interplay: a yeast dialogue between MAPK routes. Yeast 27: 495-502.
-
(2010)
Yeast
, vol.27
, pp. 495-502
-
-
Rodríguez-Pena, J.M.1
García, R.2
Nombela, C.3
Arroyo, J.4
-
40
-
-
66449128185
-
Specific and global regulation of mrna stability during osmotic stress in saccharomyces cerevisiae
-
Romero-Santacreu L, Moreno J, Pérez-Ortín JE, Alepuz P. 2009. Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae. RNA 15: 1110-1120.
-
(2009)
RNA
, vol.15
, pp. 1110-1120
-
-
Romero-Santacreu, L.1
Moreno, J.2
Pérez-Ortín, J.E.3
Alepuz, P.4
-
41
-
-
4444352289
-
Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data
-
Schmitt WA, Raab RM, Stephanopoulos G. 2004. Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data. Genome Res 14: 1654-1663.
-
(2004)
Genome Res
, vol.14
, pp. 1654-1663
-
-
Schmitt, W.A.1
Raab, R.M.2
Stephanopoulos, G.3
-
42
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. 2003. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
43
-
-
33644873184
-
Biogrid: A general repository for interaction datasets
-
Stark C, Breitkreutz B-J, Reguly T, Boucher L, Breitkreutz A, Tyers M. 2006. BioGRID: a general repository for interaction datasets. Nucleic Acids Res 34: D535-D539.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Stark, C.1
Breitkreutz, B.-.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
44
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci 98: 5116-5121.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
45
-
-
34249813098
-
Sch9 is a major target of torc1 in saccharomyces cerevisiae
-
Urban J, Soulard A, Huber A, Lippman S, Mukhopadhyay D, Deloche O, Wanke V, Anrather D, Ammerer G, Riezman H, et al. 2007. Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. Mol Cell 26: 663-674.
-
(2007)
Mol Cell
, vol.26
, pp. 663-674
-
-
Urban, J.1
Soulard, A.2
Huber, A.3
Lippman, S.4
Mukhopadhyay, D.5
Deloche, O.6
Wanke, V.7
Anrather, D.8
Ammerer, G.9
Riezman, H.10
-
46
-
-
80052592002
-
A directed protein interaction network for investigating intracellular signal transduction
-
Vinayagam A, Stelzl U, Foulle R, Plassmann S, Zenkner M, Timm J, Assmus HE, Andrade-Navarro MA, Wanker EE. 2011. A directed protein interaction network for investigating intracellular signal transduction. Sci Signal 4: rs8.
-
(2011)
Sci Signal
, vol.4
-
-
Vinayagam, A.1
Stelzl, U.2
Foulle, R.3
Plassmann, S.4
Zenkner, M.5
Timm, J.6
Assmus, H.E.7
Andrade-Navarro, M.A.8
Wanker, E.E.9
-
47
-
-
79551662808
-
Timing of plant immune responses by a central circadian regulator
-
Wang W, Barnaby JY, Tada Y, Li Hairi, Tor M, Caldelari D, Lee D, Fu X-D, Dong X. 2011. Timing of plant immune responses by a central circadian regulator. Nature 470: 110-114.
-
(2011)
Nature
, vol.470
, pp. 110-114
-
-
Wang, W.1
Barnaby, J.Y.2
Tada, Y.3
Li, H.4
Tor, M.5
Caldelari, D.6
Lee, D.7
Fu, X.-.D.8
Dong, X.9
-
48
-
-
42649117688
-
A hidden spatial-temporal markov random field model for network-based analysis of time course gene expression data
-
Wei Z, Li Hongzhe. 2008. A hidden spatial-temporal Markov random field model for network-based analysis of time course gene expression data. Ann Appl Stat 2: 408-429.
-
(2008)
Ann Appl Stat
, vol.2
, pp. 408-429
-
-
Wei, Z.1
Li, H.2
-
49
-
-
50449107120
-
Stress resistance and signal fidelity independent of nuclear mapk function
-
Westfall PJ, Patterson JC, Chen RE, Thorner J. 2008. Stress resistance and signal fidelity independent of nuclear MAPK function. Proc Natl Acad Sci 105: 12212-12217.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 12212-12217
-
-
Westfall, P.J.1
Patterson, J.C.2
Chen, R.E.3
Thorner, J.4
-
51
-
-
61349114190
-
Bridging highthroughput genetic and transcriptional data reveals cellular responses to a-synuclein toxicity
-
Yeger-Lotem E, Riva L, Su LJ, Gitler AD, Cashikar AG, King OD, Auluck PK, Geddie ML, Valastyan JS, Karger DR, et al. 2009. Bridging highthroughput genetic and transcriptional data reveals cellular responses to a-synuclein toxicity. Nat Genet 41: 316-323.
-
(2009)
Nat Genet
, vol.41
, pp. 316-323
-
-
Yeger-Lotem, E.1
Riva, L.2
Su, L.J.3
Gitler, A.D.4
Cashikar, A.G.5
King, O.D.6
Auluck, P.K.7
Geddie, M.L.8
Valastyan, J.S.9
Karger, D.R.10
-
52
-
-
78651339097
-
Agris: The arabidopsis gene regulatory information server, an update
-
Yilmaz A, Mejia-Guerra MK, Kurz K, Liang X, Welch L, Grotewold E. 2011. AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. Nucleic Acids Res 39: D1118-D1122.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Yilmaz, A.1
Mejia-Guerra, M.K.2
Kurz, K.3
Liang, X.4
Welch, L.5
Grotewold, E.6
-
53
-
-
62549145762
-
Toward accurate reconstruction of functional protein networks
-
doi: 10.1038/msb.2009.3
-
Yosef N, Ungar L, Zalckvar E, Kimchi A, Kupiec M, Ruppin E, Sharan R. 2009. Toward accurate reconstruction of functional protein networks.Mol Syst Biol 5: 248. doi: 10.1038/msb.2009.3.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 248
-
-
Yosef, N.1
Ungar, L.2
Zalckvar, E.3
Kimchi, A.4
Kupiec, M.5
Ruppin, E.6
Sharan, R.7
-
55
-
-
77952663448
-
Timedelay-aracne: Reverse engineering of gene networks from time-course data by an information theoretic approach
-
doi: 10.1186/1471-2105-11-154
-
Zoppoli P, Morganella S, Ceccarelli M. 2010. TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach. BMC Bioinformatics 11: 154. doi: 10.1186/1471-2105-11-154.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.154
-
-
Zoppoli, P.1
Morganella, S.2
Ceccarelli, M.3
|