Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae

RNA

Volumn 15, Issue 6, 2009, Pages 1110-1120

  Romero Santacreu, Lorena ^a   Moreno, Joaquín ^a   Pérez Ortín, José E ^a   Alepuz, Paula ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

Author keywords

Hog1 MAPK; mRNA stability; Osmotic stress; P bodies; Transcription rates

Indexed keywords

MESSENGER RNA; MITOGEN ACTIVATED PROTEIN KINASE; MITOGEN ACTIVATED PROTEIN KINASE P38; PROTEIN HOG1; UNCLASSIFIED DRUG;

ADAPTATION; ARTICLE; CELL MUTANT; CONTROLLED STUDY; GENE; GENE EXPRESSION; GENOME; HOG1 GENE; HYPEROSMOTIC STRESS; NONHUMAN; OSMOTIC STRESS; PRIORITY JOURNAL; REGULATORY MECHANISM; RNA STABILITY; RNA TRANSCRIPTION; SACCHAROMYCES CEREVISIAE; UPREGULATION; WILD TYPE;

GENE EXPRESSION REGULATION, FUNGAL; MITOGEN-ACTIVATED PROTEIN KINASES; OSMOTIC PRESSURE; RNA STABILITY; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION, GENETIC;

SACCHAROMYCES CEREVISIAE;

EID: 66449128185     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.1435709     Document Type: Article

References (42)

1. Alepuz, P.M., Jovanovic, A., Reiser, V., and Ammerer, G. 2001. Stress induced MAP kinase Hog1 is part of transcription activation complexes. Mol. Cell 7: 767-777. (Pubitemid 32436437)
2. Alepuz, P.M., de Nadal, E., Zapater, M., Ammerer, G., and Posas, F. 2003. Osmostress-induced transcription by Hot1 depends on a Hog1-mediated recruitment of the RNA Pol II. EMBO J. 22: 2433-2442. (Pubitemid 36604982)
3. Bellí, G., Garí, E., Piedrafita, L., Aldea, M., and Herrero, E. 1998. An activator/repressor dual system allows tight tetracycline-regulated gene expression in budding yeast. Nucleic Acids Res. 26: 942-947. (Pubitemid 28291645)
4. Bhattacharyya, S., Habermacher, R., Martine, U., Closs, E., and Filipowicz, W. 2006. Relief of microRNA-mediated translational repression in human cells subjected to stress. Cell 125: 1111-1124. (Pubitemid 43866197)
5. Bond, U. 2006. Stressed out! Effects of environmental stress on mRNA metabolism. FEMS Yeast Res 6: 160-170.
6. Brengues, M., Teixeira, D., and Parker, R. 2005. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310: 486-489. (Pubitemid 41507961)
7. de Nadal, E., Alepuz, P.M., and Posas, F. 2002. Dealing with osmostress through MAP kinase activation. EMBO Rep. 3: 735-740. (Pubitemid 34966011)
8. Duttagupta, R., Tian, B., Wilusz, C.J., Khounh, D.T., Soteropoulos, P., Ouyang, M., Dougherty, J.P., and Peltz, S.W. 2005. Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability. Mol. Cell. Biol. 25: 5499-5513.
9. Escote, X., Zapater, M., Clotet, J., and Posas, F. 2004. Hog1 mediates cell-cycle arrest in G1 phase by the dual targeting of Sic1. Nat. Cell Biol. 6: 997-1002.
10. Fan, J., Yang, X., Wang, W., Wood, W.H., Becker, K.G., and Gorospe, M. 2002. Global analysis of stress-regulated mRNA turnover by using cDNA arrays. Proc. Natl. Acad. Sci. 99: 10611-10616.
11. García-Martínez, J., Aranda, A., and Pérez- Ortín, J.E. 2004. Genomic run-on evaluates transcription rates for all yeast genes and identifies new gene regulatory mechanisms. Mol. Cell 15: 303-313. (Pubitemid 38950977)
12. Garneau, N.L., Wilusz, J., and Wilusz, C.J. 2007. The highways and byways of mRNA decay. Nat. Rev. Mol. Cell Biol. 8: 113-126.
13. Gasch, A.P., Spellman, P.T., Kao, C.M., Carmel-Harel, O., Eisen, M.B., Storz, G., Botstein, D., and Brown, P.O. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 11: 4241-4257.
14. Greatrix, B.W. and van Vuuren, H.J. 2006. Expression of the HXT13, HXT15, and HXT17 genes in Saccharomyces cerevisiae and stabilization of the HXT1 gene transcript by sugar-induced osmotic stress. Curr. Genet. 49: 205-217.
15. Gowrishankar, G., Winzen, R., Dittrich-Breiholz, O., Redich, N., Kracht, M., and Holtmann, H. 2006. Inhibition of mRNA deadenylation and degradation by different types of cell stress. Biol. Chem. 387: 323-327.
16. Grigull, J., Mnaimneh, S., Pootoolal, J., Robinson, M.D., and Hughes, T.R. 2004. Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals post-transcriptional control of ribosome biogenesis factors. Mol. Cell. Biol. 24: 5534-5547.
17. Hilgers, V., Teixeira, D., and Parker, R. 2006. Translation-independent inhibition of mRNA deadenylation during stress in Saccharomyces cerevisiae. RNA 12: 1835-1845. (Pubitemid 44484257)
18. Hohmann, S., Krantz, M., and Nordlander, B. 2007. Yeast osmoregulation. Methods Enzymol. 428: 29-45.
19. Kawai, T., Fan, J., Mazan-Mamczarz, K., and Gorospe, M. 2004. Global mRNA stabilization preferentially linked to translational repression during the endoplasmic reticulum stress response. Mol. Cell. Biol. 24: 6773-6787.
20. Kedersha, N. and Anderson, P. 2007. Mammalian stress granules and processing bodies. Methods Enzymol. 431: 61-81.
21. Keene, J.D. and Tenenbaum, S.A. 2002. Eukaryotic mRNPs may represent posttranscriptional operons. Mol. Cell 9: 1161-1167. (Pubitemid 34722296)
22. Mata, J., Marguerat, S., and Bähler, J. 2005. Post-transcriptional control of gene expression: A genome-wide perspective. Trends Biochem. Sci. 30: 506-514.
23. Melamed, D., Pnueli, L., and Arava, Y. 2008. Yeast translational response to high salinity: Global analysis reveals regulation at multiple levels. RNA 14: 1337-1351.
24. Molina-Navarro, M.M., Castells-Roca, L., Bellí, G., García- Martínez, J., Marín-Navarro, J., Moreno, J., Pérez- Ortín, J.E., and Herrero, E. 2008. Comprenhensive transcriptional analisis of the oxidative response in yeast. J. Biol. Chem. 283: 17908-17918.
25. Mumberg, D., Müller, R., and Funk, M. 1995. Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156: 119-122.
26. O'Rourke, S.M. and Herskowitz, I. 2002. A third osmosensing branch in Saccharomyces cerevisiae requires the Msb2 protein and functions in parallel with the Sho1 branch. Mol. Cell. Biol. 22: 4739-4749.
27. Parker, R. and Sheth, U. 2007. P bodies and the control of mRNA translation and degradation. Mol. Cell 25: 635-646. (Pubitemid 46341926)
28. Pascual-Ahuir, A., Struhl, K., and Prof, M. 2006. Genome-wide location analysis of the stress-activated MAP kinase Hog1 in yeast. Methods 40: 272-278. (Pubitemid 44635292)
29. Pérez-Ortín, J.E., Alepuz, P.M., and Moreno, J. 2007. Genomics and gene transcription kinetics in yeast. Trends Genet. 23: 250-257. (Pubitemid 46616969)
30. Pokholok, D.K., Zeitlinger, J., Hannett, N.M., Reynolds, D.B., and Young, R.A. 2006. Activated signal transduction kinases frequently occupy target genes. Science 313: 533-536. (Pubitemid 44148460)
31. Posas, F., Chanbers, J.R., Heyman, J.A., Hoeffler, J., de Nadal, E., and Ariño, J. 2000. The transcriptional response of yeast to saline stress. J. Biol. Chem. 275: 17249-17255.
32. Proft, M. and Struhl, K. 2004. MAP kinase-mediated stress relief that precedes and regulates the timing of transcriptional induction. Cell 118: 351-361. (Pubitemid 39061115)
33. Proft, M., Mas, G., de Nadal, E., Vendrell, A., Noriega, N., Struhl, K., and Posas, F. 2006. The stress-activated Hog1 kinase is a selective transcriptional elongation factor for genes responding to osmotic stress. Mol. Cell 23: 241-250. (Pubitemid 44062368)
34. Rep, M., Krantz, M., Thevelein, J.M., and Hohmann, S. 2000. The transcriptional response of Saccharomyces cerevisiae to osmotic shock. J. Biol. Chem. 275: 8290-8300.
35. Rodríguez-Gabriel, M.A., Burns, G., McDonald, W.H., Martín, V., Yates III, J.R., Valer, J., and Russell, P. 2003. RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress. EMBO J. 22: 6256-6266. (Pubitemid 37522583)
36. Sandler, H. and Stoecklin, G. 2008. Control of mRNA decay by phosphorylation of tristetraprolin. Biochem. Soc. Trans. 36: 491-496.
37. Shalgi, R., Lapidot, M., Shamir, R., and Pilpel, Y. 2005. A catalog of stability-associated sequence elements in 39 UTRs of yeast mRNAs. Genome Biol. 6: R86. doi: 10.1186/gb-2005-6-10-r86.
38. Sheth, U. and Parker, R. 2003. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300: 805-808. (Pubitemid 36532117)
39. Teixeira, D., Sheth, U., Valencia-Sánchez, M.A., Brengues, M., and Parker, R. 2005. Processing bodies require RNA for assembly and contain nontranslating mRNAs. RNA 11: 371-382. (Pubitemid 40397171)
40. Uesono, Y. and Toh-E, A. 2002. Transient inhibition of translation initiation by osmotic stress. J. Biol. Chem. 277: 13848-13855.
41. Vasudevan, S. and Peltz, S.W. 2001. Regulated ARE-mediated mRNA decay in Saccharomyces cerevisiae. Mol. Cell 7: 1191-1200. (Pubitemid 32607353)
42. Wang, Y., Liu, C.L., Storey, J.D., Tibshirani, R.J., Herschlag, D., and Bown, P. 2002. Precision and functional specificity in mRNA decay. Proc. Natl. Acad. Sci. 99: 5860-5865.