-
1
-
-
33746349218
-
Energy transduction: Proton transfer through the respiratory complexes
-
DOI 10.1146/annurev.biochem.75.062003.101730
-
Hosler, J. P., Ferguson-Miller, S., and Mills, D. A. (2006) Energy transduction: Proton transfer through the respiratory complexes Annu. Rev. Biochem. 75, 165-187 (Pubitemid 44118030)
-
(2006)
Annual Review of Biochemistry
, vol.75
, pp. 165-187
-
-
Hosler, J.P.1
Ferguson-Miller, S.2
Mills, D.A.3
-
2
-
-
33748965935
-
Proton pumping mechanism of bovine heart cytochrome c oxidase
-
DOI 10.1016/j.bbabio.2006.06.004, PII S000527280600185X, Mitochondria: from Molecular Insight to Physiology and Pathology
-
Yoshikawa, S., Muramoto, K., Shinzawa-Itoh, K., Aoyama, H., Tsukihara, T., Shimokata, K., Katayama, Y., and Shimada, H. (2006) Proton pumping mechanism of bovine heart cytochrome c oxidase Biochim. Biophys. Acta 1757, 1110-1116 (Pubitemid 44442134)
-
(2006)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1757
, Issue.9-10
, pp. 1110-1116
-
-
Yoshikawa, S.1
Muramoto, K.2
Shinzawa-Itoh, K.3
Aoyama, H.4
Tsukihara, T.5
Shimokata, K.6
Katayama, Y.7
Shimada, H.8
-
3
-
-
33748885262
-
Towards the mechanism of proton pumping by the haem-copper oxidases
-
DOI 10.1016/j.bbabio.2006.01.010, PII S0005272806000235
-
Wikström, M. and Verkhovsky, M. I. (2006) Towards the mechanism of proton pumping by the haem-copper oxidases Biochim. Biophys. Acta 1757, 1047-1051 (Pubitemid 44427754)
-
(2006)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1757
, Issue.8
, pp. 1047-1051
-
-
Wikstrom, M.1
Verkhovsky, M.I.2
-
4
-
-
2542483466
-
Structural elements involved in electron-coupled proton transfer in cytochrome c oxidase
-
DOI 10.1016/j.febslet.2004.04.027, PII S0014579304004909
-
Namslauer, A. and Brzezinski, P. (2004) Structural elements involved in electron-coupled proton transfer in cytochrome c oxidase FEBS Lett. 567, 103-110 (Pubitemid 38686431)
-
(2004)
FEBS Letters
, vol.567
, Issue.1
, pp. 103-110
-
-
Namslauer, A.1
Brzezinski, P.2
-
5
-
-
57049180108
-
Cytochrome c oxidase: Exciting progress and remaining mysteries
-
Brzezinski, P. and Gennis, R. B. (2008) Cytochrome c oxidase: Exciting progress and remaining mysteries J. Bioenerg. Biomembr. 40, 521-531
-
(2008)
J. Bioenerg. Biomembr.
, vol.40
, pp. 521-531
-
-
Brzezinski, P.1
Gennis, R.B.2
-
6
-
-
33746601087
-
Design principles of proton-pumping haem-copper oxidases
-
DOI 10.1016/j.sbi.2006.06.012, PII S0959440X06001163
-
Brzezinski, P. and Ädelroth, P. (2006) Design principles of proton-pumping haem-copper oxidases Curr. Opin. Struct. Biol. 16, 465-472 (Pubitemid 44149073)
-
(2006)
Current Opinion in Structural Biology
, vol.16
, Issue.4
, pp. 465-472
-
-
Brzezinski, P.1
Adelroth, P.2
-
7
-
-
66349104071
-
Electron transfer and energy transduction in the terminal part of the respiratory chain: Lessons from bacterial model systems
-
Richter, O. M. H. and Ludwig, B. (2009) Electron transfer and energy transduction in the terminal part of the respiratory chain: Lessons from bacterial model systems Biochim. Biophys. Acta 1787, 626-634
-
(2009)
Biochim. Biophys. Acta
, vol.1787
, pp. 626-634
-
-
Richter, O.M.H.1
Ludwig, B.2
-
8
-
-
36148938761
-
Molecular mechanism of proton translocation by cytochrome c oxidase
-
DOI 10.1089/ars.2007.1705
-
Belevich, I. and Verkhovsky, M. I. (2008) Molecular mechanism of proton translocation by cytochrome c oxidase Antioxid. Redox Signaling 10, 1-29 (Pubitemid 350115984)
-
(2008)
Antioxidants and Redox Signaling
, vol.10
, Issue.1
, pp. 1-29
-
-
Belevich, I.1
Verkhovsky, M.I.2
-
9
-
-
84857916726
-
Gating and regulation of the cytochrome c oxidase proton pump
-
Ferguson-Miller, S., Hiser, C., and Liu, J. (2012) Gating and regulation of the cytochrome c oxidase proton pump Biochim. Biophys. Acta 1817, 489-494
-
(2012)
Biochim. Biophys. Acta
, vol.1817
, pp. 489-494
-
-
Ferguson-Miller, S.1
Hiser, C.2
Liu, J.3
-
10
-
-
33750807024
-
Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase
-
DOI 10.1073/pnas.0606149103
-
Qin, L., Hiser, C., Mulichak, A., Garavito, R. M., and Ferguson-Miller, S. (2006) Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase Proc. Natl. Acad. Sci. U.S.A. 103, 16117-16122 (Pubitemid 44715161)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.44
, pp. 16117-16122
-
-
Qin, L.1
Hiser, C.2
Mulichak, A.3
Garavito, R.M.4
Ferguson-Miller, S.5
-
11
-
-
0036382724
-
The X-ray Crystal Structures of Wild-Type and EQ(I-286) Mutant Cytochrome c Oxidases from Rhodobacter sphaeroides
-
Svensson-Ek, M., Abramson, J., Larsson, G., Törnroth, S., Brzezinski, P., and Iwata, S. (2002) The X-ray Crystal Structures of Wild-Type and EQ(I-286) Mutant Cytochrome c Oxidases from Rhodobacter sphaeroides J. Mol. Biol. 321, 329-339
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 329-339
-
-
Svensson-Ek, M.1
Abramson, J.2
Larsson, G.3
Törnroth, S.4
Brzezinski, P.5
Iwata, S.6
-
12
-
-
0033602933
-
Aspartate-132 in cytochrome c oxidase from Rhodobacter sphaeroides is involved in a two-step proton transfer during oxo-ferryl formation
-
Smirnova, I. A., Ädelroth, P., Gennis, R. B., and Brzezinski, P. (1999) Aspartate-132 in cytochrome c oxidase from Rhodobacter sphaeroides is involved in a two-step proton transfer during oxo-ferryl formation Biochemistry 38, 6826-6833
-
(1999)
Biochemistry
, vol.38
, pp. 6826-6833
-
-
Smirnova, I.A.1
Ädelroth, P.2
Gennis, R.B.3
Brzezinski, P.4
-
13
-
-
36049009410
-
Time-resolved ATR-FTIR spectroscopy of the oxygen reaction in the D124N mutant of cytochrome c oxidase from Paracoccus denitrificans
-
DOI 10.1021/bi701614w
-
Gorbikova, E. A., Belevich, N. P., Wikström, M., and Verkhovsky, M. I. (2007) Time-resolved ATR-FTIR spectroscopy of the oxygen reaction in the D124N mutant of cytochrome c oxidase from Paracoccus denitrificans Biochemistry 46, 13141-13148 (Pubitemid 350086232)
-
(2007)
Biochemistry
, vol.46
, Issue.45
, pp. 13141-13148
-
-
Gorbikova, E.A.1
Belevich, N.P.2
Wikstrom, M.3
Verkhovsky, M.I.4
-
14
-
-
44049096214
-
Glutamic acid 242 is a valve in the proton pump of cytochrome c oxidase
-
DOI 10.1073/pnas.0800770105
-
Kaila, V. R. I., Verkhovsky, M. I., Hummer, G., and Wikström, M. (2008) Glutamic acid 242 is a valve in the proton pump of cytochrome c oxidase Proc. Natl. Acad. Sci. U.S.A. 105, 6255-6259 (Pubitemid 351758333)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.17
, pp. 6255-6259
-
-
Kaila, V.R.I.1
Verkhovsky, M.I.2
Hummer, G.3
Wikstrom, M.4
-
16
-
-
0034663652
-
Proton transfer from glutamate 286 determines the transition rates between oxygen intermediates in cytochrome c oxidase
-
DOI 10.1016/S0005-2728(00)00194-8, PII S0005272800001948
-
Ädelroth, P., Karpefors, M., Gilderson, G., Tomson, F. L., Gennis, R. B., and Brzezinski, P. (2000) Proton transfer from glutamate 286 determines the transition rates between oxygen intermediates in cytochrome c oxidase Biochim. Biophys. Acta 1459, 533-539 (Pubitemid 30612430)
-
(2000)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1459
, Issue.2-3
, pp. 533-539
-
-
Adelroth, P.1
Karpefors, M.2
Gilderson, G.3
Tomson, F.L.4
Gennis, R.B.5
Brzezinski, P.6
-
17
-
-
0032311173
-
Structure and dynamics of a proton shuttle in cytochrome c oxidase
-
DOI 10.1016/S0005-2728(98)00077-2, PII S0005272898000772
-
Pomès, R., Hummer, G., and Wikström, M. (1998) Structure and dynamics of a proton shuttle in cytochrome c oxidase Biochim. Biophys. Acta 1365, 255-260 (Pubitemid 29359266)
-
(1998)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1365
, Issue.1-2
, pp. 255-260
-
-
Pomes, R.1
Hummer, G.2
Wikstrom, M.3
-
18
-
-
67049086176
-
Redox-dependent conformational changes in cytochrome c oxidase suggest a gating mechanism for proton uptake
-
Qin, L., Liu, J., Mills, D. A., Proshlyakov, D. A., Hiser, C., and Ferguson-Miller, S. (2009) Redox-dependent conformational changes in cytochrome c oxidase suggest a gating mechanism for proton uptake Biochemistry 48, 5121-5130
-
(2009)
Biochemistry
, vol.48
, pp. 5121-5130
-
-
Qin, L.1
Liu, J.2
Mills, D.A.3
Proshlyakov, D.A.4
Hiser, C.5
Ferguson-Miller, S.6
-
19
-
-
38049091274
-
Structural elements involved in proton translocation by cytochrome c oxidase as revealed by backbone amide hydrogen-deuterium exchange of the E286H mutant
-
Busenlehner, L. S., Brändén, G., Namslauer, I., Brzezinski, P., and Armstrong, R. N. (2008) Structural elements involved in proton translocation by cytochrome c oxidase as revealed by backbone amide hydrogen-deuterium exchange of the E286H mutant Biochemistry 47, 73-83
-
(2008)
Biochemistry
, vol.47
, pp. 73-83
-
-
Busenlehner, L.S.1
Brändén, G.2
Namslauer, I.3
Brzezinski, P.4
Armstrong, R.N.5
-
20
-
-
45549107077
-
Electrostatic basis for the unidirectionality of the primary proton transfer in cytochrome c oxidase
-
DOI 10.1073/pnas.0800580105
-
Pisliakov, A. V., Sharma, P. K., Chu, Z. T., Haranczyk, M., and Warshel, A. (2008) Electrostatic basis for the unidirectionality of the primary proton transfer in cytochrome c oxidase Proc. Natl. Acad. Sci. U.S.A. 105, 7726-7731 (Pubitemid 351872706)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.22
, pp. 7726-7731
-
-
Pisliakov, A.V.1
Sharma, P.K.2
Chu, Z.T.3
Haranczyk, M.4
Warshel, A.5
-
21
-
-
79751528117
-
Exploration of the cytochrome c oxidase pathway puzzle and examination of the origin of elusive mutational effects
-
Chakrabarty, S., Namslauer, I., Brzezinski, P., and Warshel, A. (2011) Exploration of the cytochrome c oxidase pathway puzzle and examination of the origin of elusive mutational effects Biochim. Biophys. Acta 1807, 413-426
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 413-426
-
-
Chakrabarty, S.1
Namslauer, I.2
Brzezinski, P.3
Warshel, A.4
-
22
-
-
0031559894
-
Bound water in the proton translocation mechanism of the haem-copper oxidases
-
DOI 10.1016/S0014-5793(97)01003-X, PII S001457939701003X
-
Riistama, S., Hummer, G., Puustinen, A., Dyer, R. B., Woodruff, W. H., and Wikström, M. (1997) Bound water in the proton translocation mechanism of the haem-copper oxidases FEBS Lett. 414, 275-280 (Pubitemid 27389378)
-
(1997)
FEBS Letters
, vol.414
, Issue.2
, pp. 275-280
-
-
Riistama, S.1
Hummer, G.2
Puustinen, A.3
Dyer, R.B.4
Woodruff, W.H.5
Wikstrom, M.6
-
23
-
-
0031973948
-
Oxygen and proton pathways in cytochrome c oxidase
-
DOI 10.1002/(SICI)1097-0134(199801)30:1 <100::AID-PROT9>3.0.CO;2-S
-
Hofacker, I. and Schulten, K. (1998) Oxygen and proton pathways in cytochrome c oxidase Proteins 30, 100-107 (Pubitemid 28036114)
-
(1998)
Proteins: Structure, Function and Genetics
, vol.30
, Issue.1
, pp. 100-107
-
-
Hofacker, I.1
Schulten, K.2
-
24
-
-
84857922834
-
Expanding the view of proton pumping in cytochrome c oxidase through computer simulation
-
Peng, Y. and Voth, G. A. (2012) Expanding the view of proton pumping in cytochrome c oxidase through computer simulation Biochim. Biophys. Acta 1817, 518-525
-
(2012)
Biochim. Biophys. Acta
, vol.1817
, pp. 518-525
-
-
Peng, Y.1
Voth, G.A.2
-
25
-
-
80052475923
-
Glu-286 rotation and water wire reorientation are unlikely the gating elements for proton pumping in cytochrome c oxidase
-
Yang, S. and Cui, Q. (2011) Glu-286 rotation and water wire reorientation are unlikely the gating elements for proton pumping in cytochrome c oxidase Biophys. J. 101, 61-69
-
(2011)
Biophys. J.
, vol.101
, pp. 61-69
-
-
Yang, S.1
Cui, Q.2
-
26
-
-
78650545848
-
Proton-coupled electron transfer in cytochrome oxidase
-
Kaila, V. R. I., Verkhovsky, M. I., and Wikström, M. (2010) Proton-coupled electron transfer in cytochrome oxidase Chem. Rev. 110, 7062-7081
-
(2010)
Chem. Rev.
, vol.110
, pp. 7062-7081
-
-
Kaila, V.R.I.1
Verkhovsky, M.I.2
Wikström, M.3
-
27
-
-
77953770537
-
Variable proton-pumping stoichiometry in structural variants of cytochrome c oxidase
-
Brzezinski, P. and Johansson, A. L. (2010) Variable proton-pumping stoichiometry in structural variants of cytochrome c oxidase Biochim. Biophys. Acta 1797, 710-723
-
(2010)
Biochim. Biophys. Acta
, vol.1797
, pp. 710-723
-
-
Brzezinski, P.1
Johansson, A.L.2
-
28
-
-
0037452497
-
Intramolecular proton-transfer reactions in a membrane-bound proton pump: The effect of pH on the peroxy to ferryl transition in cytochrome c oxidase
-
DOI 10.1021/bi026524o
-
Namslauer, A., Aagaard, A., Katsonouri, A., and Brzezinski, P. (2003) Intramolecular proton-transfer reactions in a membrane-bound proton pump: The effect of pH on the peroxy to ferryl transition in cytochrome c oxidase Biochemsitry 42, 1488-1498 (Pubitemid 36205955)
-
(2003)
Biochemistry
, vol.42
, Issue.6
, pp. 1488-1498
-
-
Namslauer, A.1
Aagaard, A.2
Katsonouri, A.3
Brzezinski, P.4
-
29
-
-
80051588632
-
The D-channel of cytochrome oxidase: An alternative view
-
Wikström, M. and Verkhovsky, M. I. (2011) The D-channel of cytochrome oxidase: An alternative view Biochim. Biophys. Acta 1807, 1273-1278
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 1273-1278
-
-
Wikström, M.1
Verkhovsky, M.I.2
-
30
-
-
40949134606
-
Deuterium isotope effect of proton pumping in cytochrome c oxidase
-
DOI 10.1016/j.bbabio.2007.09.009, PII S0005272807002277
-
Salomonsson, L., Brändén, G., and Brzezinski, P. (2008) Deuterium isotope effect of proton pumping in cytochrome c oxidase Biochim. Biophys. Acta 1777, 343-350 (Pubitemid 351417725)
-
(2008)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1777
, Issue.4
, pp. 343-350
-
-
Salomonsson, L.1
Branden, G.2
Brzezinski, P.3
-
31
-
-
0034643820
-
Tracing the D-pathway in reconstituted site-directed mutants of cytochrome c oxidase from Paracoccus denitrificans
-
DOI 10.1021/bi992235x
-
Pfitzner, U., Hoffmeier, K., Harrenga, A., Kannt, A., Michel, H., Bamberg, E., Richter, O. M. H., and Ludwig, B. (2000) Tracing the D-pathway in reconstituted site-directed mutants of cytochrome c oxidase from Paracoccus denitrificans Biochemistry 39, 6756-6762 (Pubitemid 30390366)
-
(2000)
Biochemistry
, vol.39
, Issue.23
, pp. 6756-6762
-
-
Pfitzner, U.1
Hoffmeier, K.2
Harrenga, A.3
Kannt, A.4
Michel, H.5
Bamberg, E.6
Richter, O.-M.H.7
Ludwig, B.8
-
32
-
-
33746928351
-
Mutations which decouple the proton pump of the cytochrome c oxidase from Rhodobacter sphaeroides perturb the environment of glutamate 286
-
DOI 10.1016/j.febslet.2006.07.036, PII S0014579306008775
-
Vakkasoglu, A. S., Morgan, J. E., Han, D., Pawate, A. S., and Gennis, R. B. (2006) Mutations which decouple the proton pump of the cytochrome c oxidase from Rhodobacter sphaeroides perturb the environment of glutamate 286 FEBS Lett. 580, 4613-4617 (Pubitemid 44189377)
-
(2006)
FEBS Letters
, vol.580
, Issue.19
, pp. 4613-4617
-
-
Vakkasoglu, A.S.1
Morgan, J.E.2
Han, D.3
Pawate, A.S.4
Gennis, R.B.5
-
33
-
-
77952825869
-
3-type cytochrome c oxidase from Rhodobacter sphaeroides suggest that a continuous hydrogen-bonded chain of waters is essential for proton pumping
-
3-type cytochrome c oxidase from Rhodobacter sphaeroides suggest that a continuous hydrogen-bonded chain of waters is essential for proton pumping Biochemistry 49, 4476-4482
-
(2010)
Biochemistry
, vol.49
, pp. 4476-4482
-
-
Zhu, J.1
Han, H.2
Pawate, A.3
Gennis, R.B.4
-
34
-
-
0346734127
-
Redox-coupled proton translocation in biological systems: Proton shuttling in cytochrome c oxidase
-
DOI 10.1073/pnas.2432106100
-
Namslauer, A., Pawate, A. S., Gennis, R. B., and Brzezinski, P. (2003) Redox-coupled proton translocation in biological systems: Proton shuttling in cytochrome c oxidase Proc. Natl. Acad. Sci. U.S.A. 100, 15543-15547 (Pubitemid 38021026)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.26
, pp. 15543-15547
-
-
Namslauer, A.1
Pawate, A.S.2
Gennis, R.B.3
Brzezinski, P.4
-
35
-
-
46349095702
-
Impaired proton pumping in cytochrome c oxidase upon structural alteration of the D pathway
-
Lepp, H., Salomonsson, L., Zhu, J. P., Gennis, R. B., and Brzezinski, P. (2008) Impaired proton pumping in cytochrome c oxidase upon structural alteration of the D pathway Biochim. Biophys. Acta 1777, 897-903
-
(2008)
Biochim. Biophys. Acta
, vol.1777
, pp. 897-903
-
-
Lepp, H.1
Salomonsson, L.2
Zhu, J.P.3
Gennis, R.B.4
Brzezinski, P.5
-
36
-
-
79960566156
-
Proton-transport mechanisms in cytochrome c oxidase revealed by studies of kinetic isotope effects
-
Johansson, A. L., Chakrabarty, S., Berthold, C. L., Högbom, M., Warshel, A., and Brzezinski, P. (2011) Proton-transport mechanisms in cytochrome c oxidase revealed by studies of kinetic isotope effects Biochim. Biophys. Acta 1807, 1083-1094
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 1083-1094
-
-
Johansson, A.L.1
Chakrabarty, S.2
Berthold, C.L.3
Högbom, M.4
Warshel, A.5
Brzezinski, P.6
-
37
-
-
33646268674
-
Monte Carlo simulations of proton pumps: On the working principles of the biological valve that controls proton pumping in cytochrome c oxidase
-
Olsson, M. H. and Warshel, A. (2006) Monte Carlo simulations of proton pumps: On the working principles of the biological valve that controls proton pumping in cytochrome c oxidase Proc. Natl. Acad. Sci. U.S.A. 103, 6500-6505
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 6500-6505
-
-
Olsson, M.H.1
Warshel, A.2
-
38
-
-
33746652164
-
+ conduction in the D-pathway of Cytochrome c Oxidase: A study of the wild type and N98D mutant enzymes
-
DOI 10.1016/j.bbabio.2006.05.028, PII S0005272806001642
-
+ conduction in the D-pathway of cytochrome c oxidase: A study of the wild type and N98D mutant enzymes Biochim. Biophys. Acta 1757, 852-859 (Pubitemid 44150607)
-
(2006)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1757
, Issue.7
, pp. 852-859
-
-
Xu, J.1
Voth, G.A.2
-
39
-
-
79957871568
-
Molecular basis of proton uptake in single and double mutants of cytochrome c oxidase
-
Henry, R. M., Caplan, D., Fadda, E., and Pomès, R. (2011) Molecular basis of proton uptake in single and double mutants of cytochrome c oxidase J. Phys.: Condens. Matter 23, 234102
-
(2011)
J. Phys.: Condens. Matter
, vol.23
, pp. 234102
-
-
Henry, R.M.1
Caplan, D.2
Fadda, E.3
Pomès, R.4
-
40
-
-
63449091255
-
Functional Hydration and Conformational Gating of Proton Uptake in Cytochrome c Oxidase
-
Henry, R. M., Yu, C. H., Rodinger, T., and Pomès, R. (2009) Functional Hydration and Conformational Gating of Proton Uptake in Cytochrome c Oxidase J. Mol. Biol. 387, 1165-1185
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 1165-1185
-
-
Henry, R.M.1
Yu, C.H.2
Rodinger, T.3
Pomès, R.4
-
41
-
-
56249146306
-
A D-Pathway Mutation Decouples the Paracoccus denitrificans Cytochrome c Oxidase by Altering the Side-Chain Orientation of a Distant Conserved Glutamate
-
Duerr, K. L., Koepke, J., Hellwig, P., Mueller, H., Angerer, H., Peng, G., Olkhova, E., Richter, O. M. H., Ludwig, B., and Michel, H. (2008) A D-Pathway Mutation Decouples the Paracoccus denitrificans Cytochrome c Oxidase by Altering the Side-Chain Orientation of a Distant Conserved Glutamate J. Mol. Biol. 384, 865-877
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 865-877
-
-
Duerr, K.L.1
Koepke, J.2
Hellwig, P.3
Mueller, H.4
Angerer, H.5
Peng, G.6
Olkhova, E.7
Richter, O.M.H.8
Ludwig, B.9
Michel, H.10
-
43
-
-
0032146125
-
Overexpression and purification of cytochrome c oxidase from Rhodobacter sphaeroides
-
DOI 10.1006/prep.1998.0903
-
Zhen, Y., Qian, J., Follmann, K., Hosler, J., Hayward, T., Nilsson, T., Dahn, M., Hilmi, Y., Hamer, A., Hosler, J., and Ferguson-Miller, S. (1998) Overexpression and purification of cytochrome coxidase from Rhodobacter sphaeroides. Protein Expression and Purification Protein Expression Purif. 13, 326-336 (Pubitemid 28378826)
-
(1998)
Protein Expression and Purification
, vol.13
, Issue.3
, pp. 326-336
-
-
Zhen, Y.1
Qian, J.2
Follmann, K.3
Hayward, T.4
Nilsson, T.5
Dahn, M.6
Hilmi, Y.7
Hamer, A.G.8
Hosler, J.P.9
Ferguson-Miller, S.10
-
44
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess, B., Kutzner, C., van der Spoel, D., and Lindahl, E. (2008) GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 4, 435-447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
45
-
-
0029912748
-
Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
-
DOI 10.1021/ja9621760, PII S0002786396021762
-
Jorgensen, W. L., Maxwell, D. S., and TiradoRives, J. (1996) Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids J. Am. Chem. Soc. 118, 11225-11236 (Pubitemid 26399746)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.45
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
46
-
-
0030999097
-
Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature
-
Berger, O., Edholm, O., and Jahnig, F. (1997) Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature Biophys. J. 72, 2002-2013 (Pubitemid 27184429)
-
(1997)
Biophysical Journal
, vol.72
, Issue.5
, pp. 2002-2013
-
-
Berger, O.1
Edholm, O.2
Jahnig, F.3
-
47
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. (1983) Comparison of Simple Potential Functions for Simulating Liquid Water J. Chem. Phys. 79, 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
48
-
-
0032232405
-
Q: A molecular dynamics program for free energy calculations and empirical valence bond simulations in biomolecular systems
-
DOI 10.1016/S1093-3263(99)00012-1, PII S1093326399000121
-
Marelius, J., Kolmodin, K., Feierberg, I., and Åqvist, J. (1998) Q: A molecular dynamics program for free energy calculations and empirical valence bond simulations in biomolecular systems J. Mol. Graphics Modell. 16, 213-225 (Pubitemid 30069589)
-
(1998)
Journal of Molecular Graphics and Modelling
, vol.16
, Issue.4-6
, pp. 213-225
-
-
Marelius, J.1
Kolmodin, K.2
Feierberg, I.3
Aqvist, J.4
-
49
-
-
33646940952
-
Numerical-Integration of Cartesian Equations of Motion of a System with Constraints: Molecular-Dynamics of N-Alkanes
-
Ryckaert, J. P., Ciccotti, G., and Berendsen, H. J. C. (1977) Numerical-Integration of Cartesian Equations of Motion of a System with Constraints: Molecular-Dynamics of N-Alkanes J. Comput. Phys. 23, 327-341
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
50
-
-
36549094414
-
A Surface Constrained All-Atom Solvent Model for Effective Simulations of Polar Solutions
-
King, G. and Warshel, A. (1989) A Surface Constrained All-Atom Solvent Model for Effective Simulations of Polar Solutions J. Chem. Phys. 91, 3647-3661
-
(1989)
J. Chem. Phys.
, vol.91
, pp. 3647-3661
-
-
King, G.1
Warshel, A.2
-
51
-
-
0000115003
-
A Local Reaction Field Method for Fast Evaluation of Long-Range Electrostatic Interactions in Molecular Simulations
-
Lee, F. S. and Warshel, A. (1992) A Local Reaction Field Method for Fast Evaluation of Long-Range Electrostatic Interactions in Molecular Simulations J. Chem. Phys. 97, 3100-3107
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 3100-3107
-
-
Lee, F.S.1
Warshel, A.2
-
53
-
-
0030945495
-
Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties
-
Alexov, E. G. and Gunner, M. R. (1997) Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties Biophys. J. 72, 2075-2093 (Pubitemid 27184435)
-
(1997)
Biophysical Journal
, vol.72
, Issue.5
, pp. 2075-2093
-
-
Alexov, E.G.1
Gunner, M.R.2
-
54
-
-
84986486656
-
A Rapid Finite-Difference Algorithm, Utilizing Successive Over-Relaxation to Solve the Poisson-Boltzmann Equation
-
Nicholls, A. and Honig, B. (1991) A Rapid Finite-Difference Algorithm, Utilizing Successive Over-Relaxation to Solve the Poisson-Boltzmann Equation J. Comput. Chem. 12, 435-445
-
(1991)
J. Comput. Chem.
, vol.12
, pp. 435-445
-
-
Nicholls, A.1
Honig, B.2
-
55
-
-
79953712351
-
Alternative initial proton acceptors for the D pathway of Rhodobacter sphaeroides cytochrome c oxidase
-
Varanasi, L. and Hosler, J. (2011) Alternative initial proton acceptors for the D pathway of Rhodobacter sphaeroides cytochrome c oxidase Biochemistry 50, 2820-2828
-
(2011)
Biochemistry
, vol.50
, pp. 2820-2828
-
-
Varanasi, L.1
Hosler, J.2
-
57
-
-
64849103999
-
a analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): Toward a calibrated molecular model
-
a analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): Toward a calibrated molecular model Biochemistry 48, 2468-2485
-
(2009)
Biochemistry
, vol.48
, pp. 2468-2485
-
-
Ghosh, N.1
Xavier, P.R.2
Gunner, M.R.3
Cui, Q.4
-
58
-
-
77955833374
-
Similarity of cytochrome c oxidases in different organisms
-
Popovic, D. M., Leontyev, I. V., Beech, D. G., and Stuchebrukhov, A. A. (2010) Similarity of cytochrome c oxidases in different organisms Proteins: Struct., Funct., Bioinf. 78, 2691-2698
-
(2010)
Proteins: Struct., Funct., Bioinf.
, vol.78
, pp. 2691-2698
-
-
Popovic, D.M.1
Leontyev, I.V.2
Beech, D.G.3
Stuchebrukhov, A.A.4
-
59
-
-
25844460787
-
Titration behavior of residues at the entrance of the D-pathway of cytochrome c oxidase from Paracoccus denitrificans investigated by continuum electrostatic calculations
-
DOI 10.1529/biophysj.105.062091
-
Olkhova, E., Helms, V., and Michel, H. (2005) Titration behavior of residues at the entrance of the D-pathway of cytochrome c oxidase from Paracoccus denitrificans investigated by continuum electrostatic calculations Biophys. J. 89, 2324-2331 (Pubitemid 41401023)
-
(2005)
Biophysical Journal
, vol.89
, Issue.4
, pp. 2324-2331
-
-
Olkhova, E.1
Helms, V.2
Michel, H.3
-
60
-
-
0028941458
-
Possible proton relay pathways in cytochrome c oxidase
-
Fetter, J. R., Qian, J., Shapleigh, J., Thomas, J. W., García-Horsman, A., Schmidt, E., Hosler, J., Babcock, G. T., Gennis, R. B., and Ferguson-Miller, S. (1995) Possible proton relay pathways in cytochrome c oxidase Proc. Natl. Acad. Sci. U.S.A. 92, 1604-1608
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 1604-1608
-
-
Fetter, J.R.1
Qian, J.2
Shapleigh, J.3
Thomas, J.W.4
García-Horsman, A.5
Schmidt, E.6
Hosler, J.7
Babcock, G.T.8
Gennis, R.B.9
Ferguson-Miller, S.10
-
61
-
-
31044449343
-
Controlled uncoupling and recoupling of proton pumping in cytochrome c oxidase
-
DOI 10.1073/pnas.0507734103
-
Brändén, G., Pawate, A. S., Gennis, R. B., and Brzezinski, P. (2006) Controlled uncoupling and recoupling of proton pumping in cytochrome c oxidase Proc. Natl. Acad. Sci. U.S.A. 103, 317-322 (Pubitemid 43122398)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.2
, pp. 317-322
-
-
Branden, G.1
Pawate, A.S.2
Gennis, R.B.3
Brzezinski, P.4
-
62
-
-
0028913025
-
3 ubiquinol oxidase of Escherichia coli: Second-site mutations in subunit i that restore proton pumping in the mutant Asp135→Asn
-
3 ubiquinol oxidase of Escherichia coli: Second-site mutations in subunit I that restore proton pumping in the mutant Asp135→Asn Biochemistry 34, 4428-4433
-
(1995)
Biochemistry
, vol.34
, pp. 4428-4433
-
-
García-Horsman, J.A.1
Puustinen, A.2
Gennis, R.B.3
Wikström, M.4
-
63
-
-
0037126710
-
Determination of proton transfer rates by chemical rescue: Application to bacterial reaction centers
-
DOI 10.1021/bi020419x
-
Paddock, M. L., Ädelroth, P., Feher, G., Okamura, M. Y., and Beatty, J. T. (2002) Determination of proton transfer rates by chemical rescue: Application to bacterial reaction centers Biochemistry 41, 14716-14725 (Pubitemid 35470651)
-
(2002)
Biochemistry
, vol.41
, Issue.50
, pp. 14716-14725
-
-
Paddock, M.L.1
Adelroth, P.2
Feher, G.3
Okamura, M.Y.4
Beatty, J.T.5
-
64
-
-
33745605230
-
Calculated proton uptake on anaerobic reduction of cytochrome c oxidase: Is the reaction electroneutral?
-
DOI 10.1021/bi052183d
-
Song, Y., Michonova-Alexova, E., and Gunner, M. R. (2006) Calculated proton uptake on anaerobic reduction of cytochrome c oxidase: Is the reaction electroneutral? Biochemistry 45, 7959-7975 (Pubitemid 43993218)
-
(2006)
Biochemistry
, vol.45
, Issue.26
, pp. 7959-7975
-
-
Song, Y.1
Michonova-Alexova, E.2
Gunner, M.R.3
-
65
-
-
84857922449
-
Subunit III-depleted cytochrome c oxidase provides insight into the process of proton uptake by proteins
-
Varanasi, L. and Hosler, J. P. (2012) Subunit III-depleted cytochrome c oxidase provides insight into the process of proton uptake by proteins Biochim. Biophys. Acta 1817, 545-551
-
(2012)
Biochim. Biophys. Acta
, vol.1817
, pp. 545-551
-
-
Varanasi, L.1
Hosler, J.P.2
-
66
-
-
39949085428
-
Electrostatic control of proton pumping in cytochrome c oxidase
-
Fadda, E., Yu, C. H., and Pomès, R. (2008) Electrostatic control of proton pumping in cytochrome c oxidase Biochim. Biophys. Acta 1777, 277-284
-
(2008)
Biochim. Biophys. Acta
, vol.1777
, pp. 277-284
-
-
Fadda, E.1
Yu, C.H.2
Pomès, R.3
|