Structure and dynamics of a proton shuttle in cytochrome c oxidase

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1365, Issue 1-2, 1998, Pages 255-260

  Pomès, Régis ^a   Hummer, Gerhard ^a   Wikström, Mårten ^b  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Conformational isomerization; Grotthus mechanism; Hydrogen bonding; Molecular dynamics; Potential of mean force; Proton translocation

Indexed keywords

CYTOCHROME C OXIDASE; GLUTAMIC ACID; HEART ENZYME; MEMBRANE PROTEIN; WATER;

CATTLE; CONFERENCE PAPER; CONFORMATIONAL TRANSITION; ENZYME ACTIVE SITE; HYDROGEN BOND; ISOMERISM; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTON TRANSPORT; THERMODYNAMICS;

EID: 0032311173     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0005-2728(98)00077-2     Document Type: Conference Paper

References (20)

1. [1] N. Agmon, Chem. Phys. Lett. 244 (1995) 456-462.
2. [2] J.F. Nagle, S. Tristam-Nagle, J. Membr. Biol. 74 (1983) 1-14.
3. [3] M. Akeson, D.W. Deamer, Biophys. J. 60 (1991) 101-109.
4. [4] R. Pomès, B. Roux, Biophys. J. 71 (1996) 19-39.
5. [5] D.E. Sagnella, K. Laasonen, M.L. Klein, Biophys. J. 71 (1996) 1172-1178.
6. [6] Y. Cao, G. Váró, M. Chang, B. Ni, R. Needleman, J.K. Lanyi, Biochemistry 30 (1991) 10972-10979.
7. [7] L. Baciou, H. Michel, Biochemistry 34 (1995) 7967-7972.
8. [8] S.E. Martinez, D. Huang, M. Ponomarev, W.A. Cramer, J.L. Smith, Protein Sci. 5 (1996) 1081-1092.
9. [9] S. Riistama, G. Hummer, A. Puustinen, R.B. Dyer, W.H. Woodruff, M. Wikström, FEBS Lett. 414 (1997) 275-280.
10. [10] A.A. Konstantinov, S. Siletsky, D. Mitchell, A. Kaulen, R.B. Gennis, Proc. Natl. Acad. Sci. USA 94 (1997) 9085-9090.
11. [11] S. Iwata, C. Ostermeier, B. Ludwig, H. Michel, Nature 376 (1995) 660-669.
12. [12] T. Tsukihara, H. Aoyama, E. Yamashita, T. Tomizaki, H. Yamaguchi, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, S. Yoshikawa, Science 272 (1996) 1136-1144.
13. [13] I. Hofacker, K. Schulten, Proteins Struct. Funct. Genet. 30 (1998) 100-106.
14. [14] G. Hummer, A.E. García, D.M. Soumpasis, Faraday Disc. 103 (1996) 175-189.
15. [15] B.R. Brooks, R.E. Bruccoleri, B.D. Olafson, D.J. States, S. Swaminathan, M. Karplus, J. Comput. Chem. 4 (1983) 187-217.
16. [16] A.D. Mackerell Jr., D. Bashford, M. Bellot, R.L. Dunbrack, M.J. Field, S. Fischer, J. Gao, H. Guo, D. Joseph, S. Ha, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, D.T. Nguyen, T. Ngo, B. Prodhom, B. Roux, B. Schlenkrich, J.C. Smith, R. Stole, J. Straub, J. Wiorkiewicz-Kuczera, M. Karplus, Biophys. J. 61 (1992) A143.
17. [17] W.L. Jorgensen, J. Chandrasekhar, J.D. Madura, R.W. Impey, M.L. Klein, J. Chem. Phys. 79 (1983) 926-935.
18. [18] S. Kumar, D. Bouzida, R.H. Swendsen, P.A. Kollman, J.M. Rosenberg, J. Comput. Chem. 13 (1992) 1011-1021.
19. [19] B. Roux, Comp. Phys. Commun. 91 (1995) 275-282.
20. [20] A. Kannt, C.R.D. Lancaster, H. Michel, Biophys. J. 74 (1998) 708-721.