메뉴 건너뛰기




Volumn 12, Issue 2, 2013, Pages 1049-1061

Identification and quantification of human DNA repair protein NEIL1 by liquid chromatography/isotope-dilution tandem mass spectrometry

Author keywords

human DNA repair protein; LC MS MS; NEIL1

Indexed keywords

DNA REPAIR PROTEIN NEIL1; NITROGEN 15; PROTEIN; TRYPSIN; UNCLASSIFIED DRUG;

EID: 84873364091     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr301037t     Document Type: Article
Times cited : (22)

References (61)
  • 1
    • 0035902108 scopus 로고    scopus 로고
    • Genome maintenance mechanisms for preventing cancer
    • Hoeijmakers, J. H. Genome maintenance mechanisms for preventing cancer Nature 2001, 411, 366-374
    • (2001) Nature , vol.411 , pp. 366-374
    • Hoeijmakers, J.H.1
  • 3
    • 24944546620 scopus 로고    scopus 로고
    • Genetic instability in cancer: Theory and experiment
    • Beckman, R. A.; Loeb, L. A. Genetic instability in cancer: theory and experiment Semin. Cancer Biol. 2005, 15, 423-435
    • (2005) Semin. Cancer Biol. , vol.15 , pp. 423-435
    • Beckman, R.A.1    Loeb, L.A.2
  • 4
    • 27944445390 scopus 로고    scopus 로고
    • The emerging role of DNA repair proteins as predictive, prognostic and therapeutic targets in cancer
    • Madhusudan, S.; Middleton, M. R. The emerging role of DNA repair proteins as predictive, prognostic and therapeutic targets in cancer Cancer Treat. Rev. 2005, 31, 603-617
    • (2005) Cancer Treat. Rev. , vol.31 , pp. 603-617
    • Madhusudan, S.1    Middleton, M.R.2
  • 5
    • 34247844346 scopus 로고    scopus 로고
    • Reduced expression of human DNA repair genes in esophageal squamous-cell carcinoma in china
    • Liu, R.; Yin, L. H.; Pu, Y. P. Reduced expression of human DNA repair genes in esophageal squamous-cell carcinoma in china J. Toxicol. Environ. Health A 2007, 70, 956-963
    • (2007) J. Toxicol. Environ. Health A , vol.70 , pp. 956-963
    • Liu, R.1    Yin, L.H.2    Pu, Y.P.3
  • 7
    • 79957501125 scopus 로고    scopus 로고
    • Human cancers express mutator phenotypes: Origin, consequences and targeting
    • Loeb, L. A. Human cancers express mutator phenotypes: origin, consequences and targeting Nature Rev. Cancer 2011, 11, 450-457
    • (2011) Nature Rev. Cancer , vol.11 , pp. 450-457
    • Loeb, L.A.1
  • 8
    • 80054761771 scopus 로고    scopus 로고
    • Future directions with DNA repair inhibitors: A roadmap for disruptive approaches to cancer therapy
    • In; Kelley, M. R. Academic Press: Amsterdam
    • Kelley, M. R. Future directions with DNA repair inhibitors: A roadmap for disruptive approaches to cancer therapy. In DNA Repair in Cancer Therapy: Molecular Targets and Clinical Applications; Kelley, M. R., Ed.; Academic Press: Amsterdam, 2012; pp 301-310.
    • (2012) DNA Repair in Cancer Therapy: Molecular Targets and Clinical Applications , pp. 301-310
    • Kelley, M.R.1
  • 9
    • 0032565543 scopus 로고    scopus 로고
    • Variation in DNA repair is a factor in cancer susceptibility: A paradigm for the promises and perils of individual and population risk estimation?
    • Mohrenweiser, H. W.; Jones, I. M. Variation in DNA repair is a factor in cancer susceptibility: a paradigm for the promises and perils of individual and population risk estimation? Mutat. Res. 1998, 400, 15-24
    • (1998) Mutat. Res. , vol.400 , pp. 15-24
    • Mohrenweiser, H.W.1    Jones, I.M.2
  • 10
    • 78649471907 scopus 로고    scopus 로고
    • Mutator phenotype in cancer: Origin and consequences
    • Loeb, L. A. Mutator phenotype in cancer: origin and consequences Semin. Cancer Biol. 2010, 20, 279-280
    • (2010) Semin. Cancer Biol. , vol.20 , pp. 279-280
    • Loeb, L.A.1
  • 11
    • 77956631770 scopus 로고    scopus 로고
    • Emergence of rationally designed therapeutic strategies for breast cancer targeting DNA repair mechanisms
    • Rowe, B. P.; Glazer, P. M. Emergence of rationally designed therapeutic strategies for breast cancer targeting DNA repair mechanisms Breast Cancer Res. 2010, 12, 203
    • (2010) Breast Cancer Res. , vol.12 , pp. 203
    • Rowe, B.P.1    Glazer, P.M.2
  • 12
    • 0037125382 scopus 로고    scopus 로고
    • An analysis of DNA repair as a determinant of survival in patients with non-small-cell lung cancer
    • Bosken, C. H.; Wei, Q.; Amos, C. I.; Spitz, M. R. An analysis of DNA repair as a determinant of survival in patients with non-small-cell lung cancer J. Natl. Cancer Inst. 2002, 94, 1091-1099
    • (2002) J. Natl. Cancer Inst. , vol.94 , pp. 1091-1099
    • Bosken, C.H.1    Wei, Q.2    Amos, C.I.3    Spitz, M.R.4
  • 13
    • 0041766793 scopus 로고    scopus 로고
    • Nucleotide excision repair pathways involved in Cisplatin resistance in non-small-cell lung cancer
    • Rosell, R.; Taron, M.; Barnadas, A.; Scagliotti, G.; Sarries, C.; Roig, B. Nucleotide excision repair pathways involved in Cisplatin resistance in non-small-cell lung cancer Cancer Control 2002, 10, 297-305
    • (2002) Cancer Control , vol.10 , pp. 297-305
    • Rosell, R.1    Taron, M.2    Barnadas, A.3    Scagliotti, G.4    Sarries, C.5    Roig, B.6
  • 15
    • 0034039575 scopus 로고    scopus 로고
    • Increased levels of promutagenic etheno-DNA adducts in colonic polyps of FAP patients
    • Schmid, K.; Nair, J.; Winde, G.; Velic, I.; Bartsch, H. Increased levels of promutagenic etheno-DNA adducts in colonic polyps of FAP patients Int. J. Cancer 2000, 87, 1-4
    • (2000) Int. J. Cancer , vol.87 , pp. 1-4
    • Schmid, K.1    Nair, J.2    Winde, G.3    Velic, I.4    Bartsch, H.5
  • 18
    • 4444339833 scopus 로고    scopus 로고
    • Oxidative DNA damage and disease: Induction, repair and significance
    • Evans, M. D.; Dizdaroglu, M.; Cooke, M. S. Oxidative DNA damage and disease: induction, repair and significance Mutat. Res. 2004, 567, 1-61
    • (2004) Mutat. Res. , vol.567 , pp. 1-61
    • Evans, M.D.1    Dizdaroglu, M.2    Cooke, M.S.3
  • 20
    • 0037125133 scopus 로고    scopus 로고
    • A novel human DNA glycosylase that removes oxidative DNA damage and is homologous to Escherichia coli endonuclease VIII
    • Bandaru, V.; Sunkara, S.; Wallace, S. S.; Bond, J. P. A novel human DNA glycosylase that removes oxidative DNA damage and is homologous to Escherichia coli endonuclease VIII DNA Repair (Amst) 2002, 1, 517-529
    • (2002) DNA Repair (Amst) , vol.1 , pp. 517-529
    • Bandaru, V.1    Sunkara, S.2    Wallace, S.S.3    Bond, J.P.4
  • 22
    • 10844284635 scopus 로고    scopus 로고
    • Mouse NEIL1 protein is specific for excision of 2,6-diamino-4-hydroxy-5- formamidopyrimidine and 4,6-diamino-5-formamidopyrimidine from oxidatively damaged DNA
    • Jaruga, P.; Birincioglu, M.; Rosenquist, T. A.; Dizdaroglu, M. Mouse NEIL1 protein is specific for excision of 2,6-diamino-4-hydroxy-5- formamidopyrimidine and 4,6-diamino-5-formamidopyrimidine from oxidatively damaged DNA Biochemistry 2004, 43, 15909-15914
    • (2004) Biochemistry , vol.43 , pp. 15909-15914
    • Jaruga, P.1    Birincioglu, M.2    Rosenquist, T.A.3    Dizdaroglu, M.4
  • 23
    • 3142702720 scopus 로고    scopus 로고
    • The crystal structure of human endonuclease VIII-like 1 (NEIL1) reveals a zincless finger motif required for glycosylase activity
    • Doublie, S.; Bandaru, V.; Bond, J. P.; Wallace, S. S. The crystal structure of human endonuclease VIII-like 1 (NEIL1) reveals a zincless finger motif required for glycosylase activity Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 10284-10289
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 10284-10289
    • Doublie, S.1    Bandaru, V.2    Bond, J.P.3    Wallace, S.S.4
  • 29
    • 76749136353 scopus 로고    scopus 로고
    • Evidence for the involvement of DNA repair enzyme NEIL1 in nucleotide excision repair of (5′ R)- and (5′ S)-8,5′-cyclo-2′- deoxyadenosines
    • Jaruga, P.; Xiao, Y.; Vartanian, V.; Lloyd, R. S.; Dizdaroglu, M. Evidence for the involvement of DNA repair enzyme NEIL1 in nucleotide excision repair of (5′ R)- and (5′ S)-8,5′-cyclo-2′- deoxyadenosines Biochemistry 2010, 49, 1053-1055
    • (2010) Biochemistry , vol.49 , pp. 1053-1055
    • Jaruga, P.1    Xiao, Y.2    Vartanian, V.3    Lloyd, R.S.4    Dizdaroglu, M.5
  • 31
    • 27444431790 scopus 로고    scopus 로고
    • Induction of the human oxidized base-specific DNA glycosylase NEIL1 by reactive oxygen species
    • Das, A.; Hazra, T. K.; Boldogh, I.; Mitra, S.; Bhakat, K. K. Induction of the human oxidized base-specific DNA glycosylase NEIL1 by reactive oxygen species J. Biol. Chem. 2005, 280, 35272-35280
    • (2005) J. Biol. Chem. , vol.280 , pp. 35272-35280
    • Das, A.1    Hazra, T.K.2    Boldogh, I.3    Mitra, S.4    Bhakat, K.K.5
  • 33
    • 46649089126 scopus 로고    scopus 로고
    • Mutator phenotype of mammalian cells due to deficiency of NEIL1 DNA glycosylase, an oxidized base-specific repair enzyme
    • Maiti, A. K.; Boldogh, I.; Spratt, H.; Mitra, S.; Hazra, T. K. Mutator phenotype of mammalian cells due to deficiency of NEIL1 DNA glycosylase, an oxidized base-specific repair enzyme DNA Repair (Amst) 2008, 7, 1213-1220
    • (2008) DNA Repair (Amst) , vol.7 , pp. 1213-1220
    • Maiti, A.K.1    Boldogh, I.2    Spratt, H.3    Mitra, S.4    Hazra, T.K.5
  • 35
    • 79955572372 scopus 로고    scopus 로고
    • Stable isotope-labeling of DNA repair proteins, and their purification and characterization
    • Reddy, P. T.; Jaruga, P.; Nelson, B. C.; Lowenthal, M.; Dizdaroglu, M. Stable isotope-labeling of DNA repair proteins, and their purification and characterization Protein Expr. Purif. 2011, 78, 94-101
    • (2011) Protein Expr. Purif. , vol.78 , pp. 94-101
    • Reddy, P.T.1    Jaruga, P.2    Nelson, B.C.3    Lowenthal, M.4    Dizdaroglu, M.5
  • 37
    • 0037112668 scopus 로고    scopus 로고
    • Human DNA glycosylases of the bacterial Fpg/MutM superfamily: An alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA
    • Morland, I.; Rolseth, V.; Luna, L.; Rognes, T.; Bjoras, M.; Seeberg, E. Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA Nucleic Acids Res. 2002, 30, 4926-4936
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4926-4936
    • Morland, I.1    Rolseth, V.2    Luna, L.3    Rognes, T.4    Bjoras, M.5    Seeberg, E.6
  • 38
    • 0036829538 scopus 로고    scopus 로고
    • A back-up glycosylase in Nth1 knock-out mice is a functional Nei (endonuclease VIII) homologue
    • Takao, M.; Kanno, S.; Kobayashi, K.; Zhang, Q. M.; Yonei, S.; van der Horst, G. T.; Yasui, A. A back-up glycosylase in Nth1 knock-out mice is a functional Nei (endonuclease VIII) homologue J. Biol. Chem. 2002, 277, 42205-42213
    • (2002) J. Biol. Chem. , vol.277 , pp. 42205-42213
    • Takao, M.1    Kanno, S.2    Kobayashi, K.3    Zhang, Q.M.4    Yonei, S.5    Van Der Horst, G.T.6    Yasui, A.7
  • 39
    • 55249083320 scopus 로고    scopus 로고
    • Physical and functional interaction between human oxidized base-specific DNA glycosylase NEIL1 and flap endonuclease 1
    • Hegde, M. L.; Theriot, C. A.; Das, A.; Hegde, P. M.; Guo, Z.; Gary, R. K.; Hazra, T. K.; Shen, B.; Mitra, S. Physical and functional interaction between human oxidized base-specific DNA glycosylase NEIL1 and flap endonuclease 1 J. Biol. Chem. 2008, 283, 27028-27037
    • (2008) J. Biol. Chem. , vol.283 , pp. 27028-27037
    • Hegde, M.L.1    Theriot, C.A.2    Das, A.3    Hegde, P.M.4    Guo, Z.5    Gary, R.K.6    Hazra, T.K.7    Shen, B.8    Mitra, S.9
  • 44
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 1970, 227, 680-685
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 45
    • 0026694947 scopus 로고
    • In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis
    • Rosenfeld, J.; Capdevielle, J.; Guillemot, J. C.; Ferrara, P. In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis Anal. Biochem. 1992, 203, 173-179
    • (1992) Anal. Biochem. , vol.203 , pp. 173-179
    • Rosenfeld, J.1    Capdevielle, J.2    Guillemot, J.C.3    Ferrara, P.4
  • 47
    • 27844495699 scopus 로고    scopus 로고
    • Base-excision repair of oxidative DNA damage by DNA glycosylases
    • Dizdaroglu, M. Base-excision repair of oxidative DNA damage by DNA glycosylases Mutat. Res. 2005, 591, 45-59
    • (2005) Mutat. Res. , vol.591 , pp. 45-59
    • Dizdaroglu, M.1
  • 48
    • 0021919989 scopus 로고
    • Application of capillary gas chromatography-mass spectrometry to chemical characterization of radiation-induced base damage of DNA; Implications for assessing DNA repair processes
    • Dizdaroglu, M. Application of capillary gas chromatography-mass spectrometry to chemical characterization of radiation-induced base damage of DNA; implications for assessing DNA repair processes Anal. Biochem. 1985, 144, 593-603
    • (1985) Anal. Biochem. , vol.144 , pp. 593-603
    • Dizdaroglu, M.1
  • 49
    • 0027391867 scopus 로고
    • Quantitative determination of oxidative base damage in DNA by stable isotope-dilution mass spectrometry
    • Dizdaroglu, M. Quantitative determination of oxidative base damage in DNA by stable isotope-dilution mass spectrometry FEBS Lett. 1993, 315, 1-6
    • (1993) FEBS Lett. , vol.315 , pp. 1-6
    • Dizdaroglu, M.1
  • 51
    • 54049090766 scopus 로고    scopus 로고
    • Selected reaction monitoring for quantitative proteomics: A tutorial
    • Lange, V.; Picotti, P.; Domon, B.; Aebersold, R. Selected reaction monitoring for quantitative proteomics: a tutorial Mol. Syst. Biol. 2008, 4, 222
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 222
    • Lange, V.1    Picotti, P.2    Domon, B.3    Aebersold, R.4
  • 52
    • 84867466090 scopus 로고    scopus 로고
    • Oxidatively induced DNA damage: Mechanisms, repair and disease
    • Dizdaroglu, M. Oxidatively induced DNA damage: Mechanisms, repair and disease Cancer Lett. 2012, 327, 26-47
    • (2012) Cancer Lett. , vol.327 , pp. 26-47
    • Dizdaroglu, M.1
  • 53
    • 77952580830 scopus 로고    scopus 로고
    • RPA physically interacts with the human DNA glycosylase NEIL1 to regulate excision of oxidative DNA base damage in primer-template structures
    • Theriot, C. A.; Hegde, M. L.; Hazra, T. K.; Mitra, S. RPA physically interacts with the human DNA glycosylase NEIL1 to regulate excision of oxidative DNA base damage in primer-template structures DNA Repair (Amst) 2010, 9, 643-652
    • (2010) DNA Repair (Amst) , vol.9 , pp. 643-652
    • Theriot, C.A.1    Hegde, M.L.2    Hazra, T.K.3    Mitra, S.4
  • 54
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • Ong, S. E.; Mann, M. Mass spectrometry-based proteomics turns quantitative Nat. Chem. Biol. 2005, 1, 252-262
    • (2005) Nat. Chem. Biol. , vol.1 , pp. 252-262
    • Ong, S.E.1    Mann, M.2
  • 57
    • 34548180275 scopus 로고    scopus 로고
    • A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme
    • Janecki, D. J.; Bemis, K. G.; Tegeler, T. J.; Sanghani, P. C.; Zhai, L.; Hurley, T. D.; Bosron, W. F.; Wang, M. A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme Anal. Biochem. 2007, 369, 18-26
    • (2007) Anal. Biochem. , vol.369 , pp. 18-26
    • Janecki, D.J.1    Bemis, K.G.2    Tegeler, T.J.3    Sanghani, P.C.4    Zhai, L.5    Hurley, T.D.6    Bosron, W.F.7    Wang, M.8
  • 58
    • 67649511917 scopus 로고    scopus 로고
    • Isotope dilution strategies for absolute quantitative proteomics
    • Brun, V.; Masselon, C.; Garin, J.; Dupuis, A. Isotope dilution strategies for absolute quantitative proteomics J. Proteomics. 2009, 72, 740-749
    • (2009) J. Proteomics. , vol.72 , pp. 740-749
    • Brun, V.1    Masselon, C.2    Garin, J.3    Dupuis, A.4
  • 59
    • 66749190541 scopus 로고    scopus 로고
    • FLEXIQuant: A novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides
    • Singh, S.; Springer, M.; Steen, J.; Kirschner, M. W.; Steen, H. FLEXIQuant: a novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides J. Proteome Res. 2009, 8, 2201-2210
    • (2009) J. Proteome Res. , vol.8 , pp. 2201-2210
    • Singh, S.1    Springer, M.2    Steen, J.3    Kirschner, M.W.4    Steen, H.5
  • 60
    • 77949863763 scopus 로고    scopus 로고
    • Recombinant isotope labeled and selenium quantified proteins for absolute protein quantification
    • Zinn, N.; Winter, D.; Lehmann, W. D. Recombinant isotope labeled and selenium quantified proteins for absolute protein quantification Anal. Chem. 2010, 82, 2334-2340
    • (2010) Anal. Chem. , vol.82 , pp. 2334-2340
    • Zinn, N.1    Winter, D.2    Lehmann, W.D.3
  • 61
    • 0034652640 scopus 로고    scopus 로고
    • Genetic polymorphisms in uridine diphospho-glucuronosyltransferase 1A1 and association with breast cancer among African Americans
    • Guillemette, C.; Millikan, R. C.; Newman, B.; Housman, D. E. Genetic polymorphisms in uridine diphospho-glucuronosyltransferase 1A1 and association with breast cancer among African Americans Cancer Res. 2000, 60, 950-956
    • (2000) Cancer Res. , vol.60 , pp. 950-956
    • Guillemette, C.1    Millikan, R.C.2    Newman, B.3    Housman, D.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.