Combination of liquid chromatography-fourier transform ion cyclotron resonance-mass spectrometry with 13C-labeling for chemical assignment of sulfur-containing metabolites in onion bulbs

Analytical Chemistry

Volumn 85, Issue 3, 2013, Pages 1310-1315

  Nakabayashi, Ryo ^a   Sawada, Yuji ^a   Yamada, Yutaka ^a   Suzuki, Makoto ^a   Hirai, Masami Yokota ^a   Sakurai, Tetsuya ^a   Saito, Kazuki ^a,b  

^a Elements Chemistry Laboratory   (Japan)

^b CHIBA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALLIUM CEPA; COMPARATIVE ANALYSIS; ELEMENTAL COMPOSITIONS; FT-ICR MS; GENOMICS; GLUTATHIONES; HETEROATOMS; ION CYCLOTRONS; MASS ACCURACY; MASS DIFFERENCE; METABOLOMICS; NATURAL ABUNDANCE; PEAK PICKING; PHYTOCHEMICALS; POTENTIAL APPLICATIONS; PROFILING METHODS; QUALITY DATA; TANDEM MASS SPECTROMETRY; ULTRA-HIGH PERFORMANCE;

BIOMOLECULES; DIGITAL STORAGE; ELECTRON CYCLOTRON RESONANCE; ISOTOPES; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLITES; SULFUR;

IONS;

PLANT EXTRACT; SULFUR;

ARTICLE; CHEMISTRY; CYCLOTRON; FOURIER ANALYSIS; LIQUID CHROMATOGRAPHY; METABOLISM; METHODOLOGY; ONION; PLANT ROOT; TANDEM MASS SPECTROMETRY;

CHROMATOGRAPHY, LIQUID; CYCLOTRONS; FOURIER ANALYSIS; ONIONS; PLANT EXTRACTS; PLANT ROOTS; SULFUR; TANDEM MASS SPECTROMETRY;

EID: 84873359659     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac302733c     Document Type: Article

References (43)

1. Han, J.; Danell, R. M.; Patel, J. R.; Gumerov, D. R.; Scarlett, C. O.; Speir, J. P.; Parker, C. E.; Rusyn, I.; Zeisel, S.; Borchers, C. H. Metabolomics 2008, 4, 128-140
2. Okazaki, Y.; Saito, K. Plant Biotechnol. Rep. 2012, 6, 1-15
3. Kueger, S.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P. Plant J. 2012, 70, 39-50
4. De Vos, R. C. H.; Moco, S.; Lommen, A.; Keurentjes, J. J. B.; Bino, R. J.; Hall, R. D. Nat. Protoc. 2007, 2, 778-791
5. Sawada, Y.; Akiyama, K.; Sakata, A.; Kuwahara, A.; Otsuki, H.; Sakurai, T.; Saito, K.; Hirai, M. Y. Plant Cell Physiol. 2009, 50, 37-47
6. Oikawa, A.; Matsuda, F.; Kikuyama, M.; Mimura, T.; Saito, K. Plant Physiol. 2011, 157, 544-551
7. Kusano, M.; Tohge, T.; Fukushima, A.; Kobayashi, M.; Hayashi, N.; Otsuki, H.; Kondou, Y.; Goto, H.; Kawashima, M.; Matsuda, F.; Niida, R.; Matsui, M.; Saito, K.; Fernie, A. R. Plant J. 2011, 67, 354-369
8. Sumner, L. W.; Mendes, P.; Dixon, R. A. Phytochemistry 2003, 62, 817-836
9. Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E.; Fernie, A. R. Plant Physiol. 2011, 157, 1469-1482
10. Saito, K.; Matsuda, F. Annu. Rev. Plant Biol. 2010, 61, 463-489
11. Fernie, A. R.; Schauer, N. Trends Genet. 2009, 25, 39-48
12. Schauer, N.; Semel, Y.; Roessner, U.; Gur, A.; Balbo, I.; Carrari, F.; Pleban, T.; Perez-Melis, A.; Bruedigam, C.; Kopka, J.; Willmitzer, L.; Zamir, D.; Fernie, A. R. Nat. Biotechnol. 2006, 24, 447-454
13. Keurentjes, J. J. B.; Fu, J. Y.; de Vos, C. H. R.; Lommen, A.; Hall, R. D.; Bino, R. J.; van der Plas, L. H. W.; Jansen, R. C.; Vreugdenhil, D.; Koornneef, M. Nat. Genet. 2006, 38, 842-849
14. Matsuda, F.; Okazaki, Y.; Oikawa, A.; Kusano, M.; Nakabayashi, R.; Kikuchi, J.; Yonemaru, J.; Ebana, K.; Yano, M.; Saito, K. Plant J. 2012, 70, 624-636
15. Tohge, T.; Nishiyama, Y.; Hirai, M. Y.; Yano, M.; Nakajima, J.; Awazuhara, M.; Inoue, E.; Takahashi, H.; Goodenowe, D. B.; Kitayama, M.; Noji, M.; Yamazaki, M.; Saito, K. Plant J. 2005, 42, 218-235
16. Yonekura-Sakakibara, K.; Tohge, T.; Matsuda, F.; Nakabayashi, R.; Takayama, H.; Niida, R.; Watanabe-Takahashi, A.; Inoue, E.; Saito, K. Plant Cell 2008, 20, 2160-2176
17. Hirai, M. Y.; Sugiyama, K.; Sawada, Y.; Tohge, T.; Obayashi, T.; Suzuki, A.; Araki, R.; Sakurai, N.; Suzuki, H.; Aoki, K.; Goda, H.; Nishizawa, O. I.; Shibata, D.; Saito, K. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 6478-6483
18. Itkin, M.; Rogachev, I.; Alkan, N.; Rosenberg, T.; Malitsky, S.; Masini, L.; Meir, S.; Iijima, Y.; Aoki, K.; de Vos, R.; Prusky, D.; Burdman, S.; Beekwilder, J.; Aharoni, A. Plant Cell 2011, 23, 4507-4525
19. Okazaki, Y.; Shimojima, M.; Sawada, Y.; Toyooka, K.; Narisawa, T.; Mochida, K.; Tanaka, H.; Matsuda, F.; Hirai, A.; Hirai, M. Y.; Ohta, H.; Saito, K. Plant Cell 2009, 21, 892-909
20. Hartmann, T. Phytochemistry 2007, 68, 2831-2846
21. DellaPenna, D.; O'Connor, S. E. Science 2012, 336, 1648-1649
22. Newman, D. J.; Cragg, G. M. J. Nat. Prod. 2012, 75, 311-335
23. Miura, D.; Tsuji, Y.; Takahashi, K.; Wariishi, H.; Saito, K. Anal. Chem. 2010, 82, 5887-5891
24. Hirai, M. Y.; Yano, M.; Goodenowe, D. B.; Kanaya, S.; Kimura, T.; Awazuhara, M.; Arita, M.; Fujiwara, T.; Saito, K. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10205-10210
25. Takahashi, H.; Kai, K.; Shinbo, Y.; Tanaka, K.; Ohta, D.; Oshima, T.; Altaf-Ul-Amin, M.; Kurokawa, K.; Ogasawara, N.; Kanaya, S. Anal. Bioanal. Chem. 2008, 391, 2769-2782
26. Masamura, N.; McCallum, J.; Khrustaleva, L.; Kenel, F.; Pither-Joyce, M.; Shono, J.; Suzuki, G.; Mukai, Y.; Yamauchi, N.; Shigyo, M. G3 2012, 2, 643-651
27. Imai, S.; Tsuge, N.; Tomotake, M.; Nagatome, Y.; Sawada, H.; Nagata, T.; Kumagai, H. Nature 2002, 419, 685-685
28. Eady, C. C.; Kamoi, T.; Kato, M.; Porter, N. G.; Davis, S.; Shaw, M.; Kamoi, A.; Imai, S. Plant Physiol. 2008, 147, 2096-2106
29. Giavalisco, P.; Hummel, J.; Lisec, J.; Inostroza, A. C.; Catchpole, G.; Willmitzer, L. Anal. Chem. 2008, 80, 9417-9425
30. Giavalisco, P.; Kohl, K.; Hummel, J.; Seiwert, B.; Willmitzer, L. Anal. Chem. 2009, 81, 6546-6551
31. Kind, T.; Fiehn, O. BMC Bioinf. 2006, 7, 234
32. van der Hooft, J. J. J.; Vervoort, J.; Bino, R. J.; Beekwilder, J.; de Vos, R. C. H. Anal. Chem. 2011, 83, 409-416
33. Rodgers, R. P.; Blumer, E. N.; Hendrickson, C. L.; Marshall, A. G. J. Am. Soc. Mass Spectrom. 2000, 11, 835-840
34. Hegeman, A. D.; Schulte, C. F.; Cui, Q.; Lewis, I. A.; Huttlin, E. L.; Eghbalnia, H.; Harms, A. C.; Ulrich, E. L.; Markley, J. L.; Sussman, M. R. Anal. Chem. 2007, 79, 6912-6921
35. Giavalisco, P.; Li, Y.; Matthes, A.; Eckhardt, A.; Hubberten, H. M.; Hesse, H.; Segu, S.; Hummel, J.; Kohl, K.; Willmitzer, L. Plant J. 2011, 68, 364-376
36. Feldberg, L.; Venger, I.; Malitsky, S.; Rogachev, I.; Aharoni, A. Anal. Chem. 2009, 81, 9257-9266
37. Kind, T.; Fiehn, O. Bioanal. Rev. 2010, 2, 23-60
38. Wetli, H. A.; Brenneisen, R.; Tschudi, I.; Langos, M.; Bigler, P.; Sprang, T.; Schurch, S.; Muhlbauer, R. C. J. Agric. Food. Chem. 2005, 53, 3408-3414
39. Parkin, K. L.; Zhang, G. Process of Preparing Conjugates of Allium Organosulfur Compounds with Amino Acids, Peptides, and Proteins. U.S. Patent Application 20110082282, April 7, 2011.
40. Rose, P.; Whiteman, M.; Moore, P. K.; Zhu, Y. Z. Nat. Prod. Rep. 2005, 22, 351-368
41. Sturm, S.; Seger, C. J. Chromatogr., A 2012, 1259, 50-61
42. Nakabayashi, R.; Kusano, M.; Kobayashi, M.; Tohge, T.; Yonekura-Sakakibara, K.; Kogure, N.; Yamazaki, M.; Kitajima, M.; Saito, K.; Takayama, H. Phytochemistry 2009, 70, 1017-1029
43. Sawada, Y.; Nakabayashi, R.; Yamada, Y.; Suzuki, M.; Sato, M.; Sakata, A.; Akiyama, K.; Sakurai, T.; Matsuda, F.; Aoki, T.; Hirai, M. Y.; Saito, K. Phytochemistry 2012, 82, 38-45