-
1
-
-
9144236348
-
Generation and analysis of end sequence database for T-DNA tagging lines in rice
-
An S, Park S, Jeong DH et al (2003) Generation and analysis of end sequence database for T-DNA tagging lines in rice. Plant Physiol 133: 2040-2047.
-
(2003)
Plant Physiol
, vol.133
, pp. 2040-2047
-
-
An, S.1
Park, S.2
Jeong, D.H.3
-
2
-
-
0001844190
-
Copper enzymes in isolated chloroplast polyphenoloxidase in Beta vulgaris
-
Arnon DI (1949) Copper enzymes in isolated chloroplast polyphenoloxidase in Beta vulgaris. Plant Physiol 24: 1-15.
-
(1949)
Plant Physiol
, vol.24
, pp. 1-15
-
-
Arnon, D.I.1
-
3
-
-
0030681260
-
The significance of digital gene expression profiles
-
Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7: 986-995.
-
(1997)
Genome Res
, vol.7
, pp. 986-995
-
-
Audic, S.1
Claverie, J.M.2
-
4
-
-
0037313579
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
-
Blanc G, Hokamp K, Wolfe KH (2003) A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 13: 137-144.
-
(2003)
Genome Res
, vol.13
, pp. 137-144
-
-
Blanc, G.1
Hokamp, K.2
Wolfe, K.H.3
-
5
-
-
66649109765
-
Specialization of the Golden2-like regulatory pathway during land plant evolution
-
Bravo-Garcia A, Yasumura Y, Langdale JA (2009) Specialization of the Golden2-like regulatory pathway during land plant evolution. New Phytol 183: 133-141.
-
(2009)
New Phytol
, vol.183
, pp. 133-141
-
-
Bravo-Garcia, A.1
Yasumura, Y.2
Langdale, J.A.3
-
6
-
-
77955362800
-
Polyploidy did not predate the evolution of nodulation in all legumes
-
Cannon SB, Ilut D, Farmer AD, Maki SL, May GD, Singer SR, Doyle JJ (2010) Polyploidy did not predate the evolution of nodulation in all legumes. PLoS One 5: e11630.
-
(2010)
PLoS One
, vol.5
-
-
Cannon, S.B.1
Ilut, D.2
Farmer, A.D.3
Maki, S.L.4
May, G.D.5
Singer, S.R.6
Doyle, J.J.7
-
8
-
-
84861544752
-
MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments
-
Collingridge PW, Kelly S (2012) MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments. BMC Bioinforma 13: 117.
-
(2012)
BMC Bioinforma
, vol.13
, pp. 117
-
-
Collingridge, P.W.1
Kelly, S.2
-
9
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
10
-
-
41849120789
-
Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
-
Fang J, Chai C, Qian Q, Li C, Tang J, Sun L, Huang Z, Guo X, Sun C, Liu M, Zhang Y, Lu Q, Wang Y, Lu C, Han B, Chen F, Cheng Z, Chu C (2008) Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. Plant J 54: 177-189.
-
(2008)
Plant J
, vol.54
, pp. 177-189
-
-
Fang, J.1
Chai, C.2
Qian, Q.3
Li, C.4
Tang, J.5
Sun, L.6
Huang, Z.7
Guo, X.8
Sun, C.9
Liu, M.10
Zhang, Y.11
Lu, Q.12
Wang, Y.13
Lu, C.14
Han, B.15
Chen, F.16
Cheng, Z.17
Chu, C.18
-
11
-
-
0036742107
-
GLK gene pairs regulate chloroplast development in diverse plant species
-
Fitter DW, Martin DJ, Copley MJ, Scotland RW, Langdale JA (2002) GLK gene pairs regulate chloroplast development in diverse plant species. Plant J 31: 713-727.
-
(2002)
Plant J
, vol.31
, pp. 713-727
-
-
Fitter, D.W.1
Martin, D.J.2
Copley, M.J.3
Scotland, R.W.4
Langdale, J.A.5
-
12
-
-
0035029534
-
Maximum-likelihood phylogenetic analysis under a covarion-like model
-
Galtier N (2001) Maximum-likelihood phylogenetic analysis under a covarion-like model. Mol Biol Evol 18: 866-873.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 866-873
-
-
Galtier, N.1
-
13
-
-
42449106989
-
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
-
Gutiérrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM (2008) Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc Natl Acad Sci USA 105: 4939-4944.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4939-4944
-
-
Gutiérrez, R.A.1
Stokes, T.L.2
Thum, K.3
Xu, X.4
Obertello, M.5
Katari, M.S.6
Tanurdzic, M.7
Dean, A.8
Nero, D.C.9
McClung, C.R.10
Coruzzi, G.M.11
-
14
-
-
0032100902
-
GOLDEN2: a novel transcriptional regulator of cellular differentiation in the maize leaf
-
Hall LN, Rossini L, Cribb L, Langdale JA (1998) GOLDEN2: a novel transcriptional regulator of cellular differentiation in the maize leaf. Plant Cell 10: 925-936.
-
(1998)
Plant Cell
, vol.10
, pp. 925-936
-
-
Hall, L.N.1
Rossini, L.2
Cribb, L.3
Langdale, J.A.4
-
15
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
16
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillion O, Aury J-M, Noel B et al (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillion, O.1
Aury, J.-M.2
Noel, B.3
-
17
-
-
70350637365
-
Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling
-
Kakizaki T, Matsumura H, Nakayama K, Che FS, Terauchi R, Inaba T (2009) Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling. Plant Physiol 151: 1339-1353.
-
(2009)
Plant Physiol
, vol.151
, pp. 1339-1353
-
-
Kakizaki, T.1
Matsumura, H.2
Nakayama, K.3
Che, F.S.4
Terauchi, R.5
Inaba, T.6
-
18
-
-
33644792802
-
Improvement in the accuracy of multiple sequence alignment program MAFFT
-
Katoh K, Kuma K, Miyata T, Toh H (2005) Improvement in the accuracy of multiple sequence alignment program MAFFT. Genome Inform 16: 22-33.
-
(2005)
Genome Inform
, vol.16
, pp. 22-33
-
-
Katoh, K.1
Kuma, K.2
Miyata, T.3
Toh, H.4
-
19
-
-
84874964884
-
Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes
-
Kelly S, Wickstead B, Gull K (2011) Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes. Proc Biol Sci 278: 1009-1018.
-
(2011)
Proc Biol Sci
, vol.278
, pp. 1009-1018
-
-
Kelly, S.1
Wickstead, B.2
Gull, K.3
-
20
-
-
84860149968
-
Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis
-
Kobayashi K, Baba S, Obayashi T, Sato M, Toyooka K, Keranen M, Aro EM, Fukaki H, Ohta H, Sugimoto K, Masuda T (2012) Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis. Plant Cell 24: 1081-1095.
-
(2012)
Plant Cell
, vol.24
, pp. 1081-1095
-
-
Kobayashi, K.1
Baba, S.2
Obayashi, T.3
Sato, M.4
Toyooka, K.5
Keranen, M.6
Aro, E.M.7
Fukaki, H.8
Ohta, H.9
Sugimoto, K.10
Masuda, T.11
-
22
-
-
0001304219
-
In situ hybridization
-
M. Freeling and V. Walbot (Eds.), Heidelberg: Springer
-
Langdale JA (1994) In situ hybridization. In: Freeling M, Walbot V (eds) The maize handbook. Springer, Heidelberg, pp 165-179.
-
(1994)
The Maize Handbook
, pp. 165-179
-
-
Langdale, J.A.1
-
23
-
-
84855181935
-
4 photosynthesis
-
4 photosynthesis. Plant Cell 23: 3879-3892.
-
(2011)
Plant Cell
, vol.23
, pp. 3879-3892
-
-
Langdale, J.A.1
-
24
-
-
0028174256
-
bundle sheath defective, a mutation that disrupts cellular differentiation in maize leaves
-
Langdale JA, Kidner CA (1994) bundle sheath defective, a mutation that disrupts cellular differentiation in maize leaves. Development 120: 673-681.
-
(1994)
Development
, vol.120
, pp. 673-681
-
-
Langdale, J.A.1
Kidner, C.A.2
-
25
-
-
0023713166
-
Cellular patterns of photosynthetic gene expression in developing maize leaves
-
Langdale JA, Rothermel BA, Nelson T (1988a) Cellular patterns of photosynthetic gene expression in developing maize leaves. Genes Dev 2: 106-115.
-
(1988)
Genes Dev
, vol.2
, pp. 106-115
-
-
Langdale, J.A.1
Rothermel, B.A.2
Nelson, T.3
-
27
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
28
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le SQ, Gascuel O (2008) An improved general amino acid replacement matrix. Mol Biol Evol 25: 1307-1320.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
29
-
-
34548131215
-
4 photosynthesis
-
4 photosynthesis. Plant J 51: 886-896.
-
(2007)
Plant J
, vol.51
, pp. 886-896
-
-
Marshall, D.M.1
Muhaidat, R.2
Brown, N.J.3
Liu, Z.4
Stanley, S.5
Griffiths, H.6
Sage, R.F.7
Hibberd, J.M.8
-
31
-
-
0019321718
-
Rapid isolation of high molecular weight plant DNA
-
Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 4321-4325
-
-
Murray, M.G.1
Thompson, W.F.2
-
32
-
-
70450235172
-
Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells
-
Nakamura H, Muramatsu M, Hakata M, Ueno O, Nagamura Y, Hirochika H, Takano M, Ichikawa H (2009) Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells. Plant Cell Physiol 50: 1933-1949.
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 1933-1949
-
-
Nakamura, H.1
Muramatsu, M.2
Hakata, M.3
Ueno, O.4
Nagamura, Y.5
Hirochika, H.6
Takano, M.7
Ichikawa, H.8
-
33
-
-
34548859240
-
A protocol for Agrobacterium-mediated transformation in rice
-
Nishimura A, Aichi I, Matsuoka M (2006) A protocol for Agrobacterium-mediated transformation in rice. Nat Protoc 1: 2796-2802.
-
(2006)
Nat Protoc
, vol.1
, pp. 2796-2802
-
-
Nishimura, A.1
Aichi, I.2
Matsuoka, M.3
-
34
-
-
37849032457
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
Rensing SA, Lang D, Zimmer AD et al (2008) The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64-69.
-
(2008)
Science
, vol.319
, pp. 64-69
-
-
Rensing, S.A.1
Lang, D.2
Zimmer, A.D.3
-
35
-
-
0034671865
-
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes
-
Riechmann J, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe O, Samaha R, Creelman R, Pilgrim M, Broun P, Zhang J, Ghandehari D, Sherman B, Yu G (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290: 2105-2110.
-
(2000)
Science
, vol.290
, pp. 2105-2110
-
-
Riechmann, J.1
Heard, J.2
Martin, G.3
Reuber, L.4
Jiang, C.5
Keddie, J.6
Adam, L.7
Pineda, O.8
Ratcliffe, O.9
Samaha, R.10
Creelman, R.11
Pilgrim, M.12
Broun, P.13
Zhang, J.14
Ghandehari, D.15
Sherman, B.16
Yu, G.17
-
36
-
-
0035020232
-
The maize golden2 gene defines a novel class of transcriptional regulators in plants
-
Rossini L, Cribb L, Martin DJ, Langdale JA (2001) The maize golden2 gene defines a novel class of transcriptional regulators in plants. Plant Cell 13: 1231-1244.
-
(2001)
Plant Cell
, vol.13
, pp. 1231-1244
-
-
Rossini, L.1
Cribb, L.2
Martin, D.J.3
Langdale, J.A.4
-
38
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz J, Cannon SB, Schlueter J et al (2010) Genome sequence of the palaeopolyploid soybean. Nature 463: 178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
-
39
-
-
33745478966
-
Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae
-
Schranz ME, Mitchell-Olds T (2006) Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. Plant Cell 18: 1152-1165.
-
(2006)
Plant Cell
, vol.18
, pp. 1152-1165
-
-
Schranz, M.E.1
Mitchell-Olds, T.2
-
40
-
-
0000912237
-
Differential expression of the ribulose bisphosphate carboxylase large subunit gene in bundle sheath and mesophyll cells of developing maize leaves is influenced by light
-
Sheen JY, Bogorad L (1985) Differential expression of the ribulose bisphosphate carboxylase large subunit gene in bundle sheath and mesophyll cells of developing maize leaves is influenced by light. Plant Physiol 79: 1072-1076.
-
(1985)
Plant Physiol
, vol.79
, pp. 1072-1076
-
-
Sheen, J.Y.1
Bogorad, L.2
-
41
-
-
60249085527
-
Polyploidy and angiosperm diversification
-
Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, de Pamphilis CW, Wall PK, Soltis PS (2009) Polyploidy and angiosperm diversification. Am J Bot 96: 336-348.
-
(2009)
Am J Bot
, vol.96
, pp. 336-348
-
-
Soltis, D.E.1
Albert, V.A.2
Leebens-Mack, J.3
Bell, C.D.4
Paterson, A.H.5
Zheng, C.6
Sankoff, D.7
de Pamphilis, C.W.8
Wall, P.K.9
Soltis, P.S.10
-
42
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
43
-
-
77954202497
-
DendroPy: a Python library for phylogenetic computing
-
Sukumaran J, Holder MT (2010) DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571.
-
(2010)
Bioinformatics
, vol.26
, pp. 1569-1571
-
-
Sukumaran, J.1
Holder, M.T.2
-
44
-
-
0036008348
-
Arabidopsis GARP transcriptional activators interact with the Pro-rich activation domain shared by G-Box-binding bZIP factors
-
Tamai H, Iwabuchi M, Meshi T (2002) Arabidopsis GARP transcriptional activators interact with the Pro-rich activation domain shared by G-Box-binding bZIP factors. Plant Cell Physiol 43: 99-107.
-
(2002)
Plant Cell Physiol
, vol.43
, pp. 99-107
-
-
Tamai, H.1
Iwabuchi, M.2
Meshi, T.3
-
45
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
Tuskan GA, Difazio S, Jansson S et al (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
-
46
-
-
77957560949
-
The genome of the domesticated apple (Malus x domestica Borkh.)
-
Velasco R, Zharkikh A, Affourtit J et al (2010) The genome of the domesticated apple (Malus x domestica Borkh.). Nat Genet 42: 833-839.
-
(2010)
Nat Genet
, vol.42
, pp. 833-839
-
-
Velasco, R.1
Zharkikh, A.2
Affourtit, J.3
-
47
-
-
70350571205
-
The making of a chloroplast
-
Waters MT, Langdale JA (2009) The making of a chloroplast. EMBO J 28: 2861-2873.
-
(2009)
EMBO J
, vol.28
, pp. 2861-2873
-
-
Waters, M.T.1
Langdale, J.A.2
-
48
-
-
54349113094
-
GLK transcription factors regulate chloroplast development in a cell-autonomous manner
-
Waters MT, Moylan EC, Langdale JA (2008) GLK transcription factors regulate chloroplast development in a cell-autonomous manner. Plant J 56: 432-444.
-
(2008)
Plant J
, vol.56
, pp. 432-444
-
-
Waters, M.T.1
Moylan, E.C.2
Langdale, J.A.3
-
49
-
-
66149173501
-
GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis
-
Waters MT, Wang P, Korkaric M, Capper RG, Saunders NJ, Langdale JA (2009) GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis. Plant Cell 21: 1109-1128.
-
(2009)
Plant Cell
, vol.21
, pp. 1109-1128
-
-
Waters, M.T.1
Wang, P.2
Korkaric, M.3
Capper, R.G.4
Saunders, N.J.5
Langdale, J.A.6
-
52
-
-
0035344021
-
Yesterday's polyploids and the mystery of diploidization
-
Wolfe KH (2001) Yesterday's polyploids and the mystery of diploidization. Nat Rev Genet 2: 333-341.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 333-341
-
-
Wolfe, K.H.1
-
53
-
-
0031595972
-
4 photosynthesis in sorghum: isolation, characterization and RFLP mapping of mesophyll- and bundle-sheath-specific cDNAs obtained by differential screening
-
4 photosynthesis in sorghum: isolation, characterization and RFLP mapping of mesophyll- and bundle-sheath-specific cDNAs obtained by differential screening. Plant Mol Biol 37: 319-335.
-
(1998)
Plant Mol Biol
, vol.37
, pp. 319-335
-
-
Wyrich, R.1
Dressen, U.2
Brockmann, S.3
Streubel, M.4
Chang, C.5
Qiang, D.6
Paterson, A.7
Westhoff, P.8
-
55
-
-
33644796518
-
A conserved transcription factor mediates nuclear control of organelle biogenesis in anciently diverged land plants
-
Yasumura Y, Moylan E, Langdale J (2005) A conserved transcription factor mediates nuclear control of organelle biogenesis in anciently diverged land plants. Plant Cell 17: 1894-1907.
-
(2005)
Plant Cell
, vol.17
, pp. 1894-1907
-
-
Yasumura, Y.1
Moylan, E.2
Langdale, J.3
|