Ectopic overexpression of the transcription factor osglk1 induces chloroplast development in non-green rice cells

Plant and Cell Physiology

Volumn 50, Issue 11, 2009, Pages 1933-1949

  Nakamura, Hidemitsu ^a,b   Muramatsu, Masayuki ^a   Hakata, Makoto ^a,c   Ueno, Osamu ^a,d   Nagamura, Yoshiaki ^a   Hirochika, Hirohiko ^a   Takano, Makoto ^a   Ichikawa, Hiroaki ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c FOOD RESEARCH INSTITUTE   (Japan)

^d KYUSHU UNIVERSITY   (Japan)

Author keywords

Chloroplast development; FOX hunting system; GARP transcription factor; Oryza sativa; OsGLK1; Rice

Indexed keywords

CHLOROPHYLL; COMPLEMENTARY DNA; GLK1 PROTEIN, ORYZA SATIVA; MESSENGER RNA; PLANT DNA; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

ARTICLE; CHLOROPLAST; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PHOTOSYNTHESIS; PLANT GENE; PLANT LEAF; RICE; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE;

CHLOROPHYLL; CHLOROPLASTS; DNA, COMPLEMENTARY; DNA, PLANT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MICROSCOPY, ELECTRON, TRANSMISSION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORYZA SATIVA; PHOTOSYNTHESIS; PLANT LEAVES; PLANT PROTEINS; RNA, MESSENGER; TRANSCRIPTION FACTORS;

AGROBACTERIUM; ORYZA SATIVA; RHIZOBIUM;

EID: 70450235172     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcp138     Document Type: Article

References (65)

1. Agrawal, G.K., Jwa, N.S. and Rakwal, R. (2000a) A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphate inhibitors. Biochem. Biophys. Res. Commun. 274: 157-165.
2. Agrawal, G.K., Rakwal, R. and Jwa, N.S. (2000b) Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signal. Biochem. Biophys. Res. Commun. 278: 290-298.
3. Allison, L.A. (2000) The role of sigma factors in plastid transcription. Biochemie 82: 537-548.
4. Arnon, D.I. (1949) Copper enzymes in isolated chloroplasts polyphenoloxidase in Beta vulgaris. Plant Physiol. 24: 1-15.
5. Castillon, A., Shen, H. and Huq, E. (2007) Phytochrome interacting factors: central players in phytochrome-mediated light signaling networks. Trends Plant Sci. 12: 514-521.
6. Chattopadhyay, S., Ang, L.H., Puente, P., Deng, X.W. and Wei, N. (1998) Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. Plant Cell 10: 673-683.
7. Eckhardt, U., Grimm, B. and Hörtensteiner, S. (2004) Recent advances in chlorophyll biosynthesis and breakdown in higher plants. Plant Mol. Biol. 56: 1-14.
8. Fairchild, C.D., Schumaker, M.A. and Quail, P.H. (2000) HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes Dev. 14: 2377-2391.
9. Fitter, D.W., Martin, D.J., Copley, M.J., Scotland, R.W. and Langdale, J.A. (2002) GLK gene pairs regulate chloroplast development in diverse plant species. Plant J. 31: 713-727.
10. Fujita, M., Mizukado, S., Fujita, Y., Ichikawa, T., Nakazawa, M., Seki, M., et al. ( 2007 ) Identifi cation of stress-tolerance-related transcription-factor genes via mini-scale full-length cDNA over-expressor (FOX) gene hunting system. Biochem. Biophys. Res. Commun. 364: 250-257.
11. Hall, L.N., Rossini, L., Cribb, L. and Langdale, J.A. (1998) GOLDEN 2: a novel transcriptional regulator of cellular differentiation in the maize leaf. Plant Cell 10: 925-936.
12. Hiratsu, K., Matsui, K., Koyama, T. and Ohme-Takagi, M. (2003) Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34: 733-739.
13. Holm, M., Ma, L., Qu, L. and Deng, X.W. (2002) Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes Dev. 16: 1247-1259.
14. Hood, E.E., Gelvin, S.B., Melchers, L.S. and Hoekema, A. (1993) New Agrobacterium helper plasmids for gene transfer to plants. Transgenic Res. 2: 208-218.
15. Ichikawa, T., Nakazawa, M., Kawashima, M., Iizumi, H., Kuroda, H., Kondou, Y., et al. (2006) The FOX hunting system: an alternative gain-of-function gene hunting technique. Plant J. 48: 974-985.
16. Ishizaki, Y., Tsunoyama, Y., Hatano, K., Ando, K., Kato, K., Shinmyo, A., et al. (2005) A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons. Plant J. 42: 133-144.
17. Jain, M., Nijhawan, A., Tyagi, A.K. and Khurana, J.P. (2006) Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem. Biophys. Res. Commun. 345: 646-651.
18. Jang, I.C., Yang, J.Y., Seo, H.S. and Chua, N.H. (2005) HFR is targeted by COP1 E3 ligase for post-translational proteolysis during phytochrome A signaling. Genes Dev. 19: 593-602.
19. Kakizaki, T., Matsumura, H., Nakayama, K., Fang-Sik, C., Terauchi, R. and Inaba, T. (2009) Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling. Plant Physiol. in press [epub ahead of print] (DOI:10.1104/ pp.109.145987).
20. Khush, G.S. (2005) What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol. Biol. 59: 1-6.
21. Kobayashi, H. (1991) Differentiation of amyloplasts and chromoplasts. In The Photosynthetic Apparatus: Molecular Biology and Operation, Volume 7B, Cell Culture and Somatic Cell Genetics of Plants. Edited by Bogorad, L. and Vasil, I.K. pp. 395-415.
22. Academic Press, San Diego. Kondou, Y., Higuchi, M., Takahashi, S., Sakurai, T., Ichikawa, T., Kuroda, H., et al. ( 2009 ) Systematic approaches to using the FOX hunting system to identify useful rice genes. Plant J. 57: 883-894.
23. Koussevitzky, S., Nott, A., Mockler, T.C., Hong, F., Sachetto-Martins, G., Surpin, M., Lim, J., et al. (2007) Signals from chloroplasts converge to regulate nuclear gene expression. Science 316: 715-719.
24. Kubota, Y., Miyao, A., Hirochika, H., Tozawa, Y., Yasuda, H., Tsunoyama, Y., et al. (2007) Two novel nuclear genes, OsSIG5 and OsSIG6, encoding potential plastid sigma factors of RNA polymerase in rice: tissue-specifi c and light-responsive gene expression. Plant Cell Physiol. 48: 186-192.
25. Kusumi, K., Yara, A., Mitsui, N., Tozawa, Y. and Iba, K. (2004) Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpoTp. Plant Cell Physiol. 45: 1194-1201.
26. Lee, S., Kim, J.-H., Yoo, E.S., Lee, C.-H., Hirochika, H. and An, G. (2005) Differential regulation of chlorophyll a oxygenase genes in rice. Plant Mol. Biol. 57: 805-818.
27. Leister, D. and Schneider, A. (2003) From genes to photosynthesis in Arabidopsis thaliana. Int. Rev. Cytol. 228: 31-83.
28. Liere, K. and Maliga, P. (1999) In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and plant mitochondrial promoters. EMBO J. 18: 249-257.
29. Link, G. ( 1991 ) Photoregulated development of chloroplasts. In The Photosynthetic Apparatus: Molecular Biology and Operation, Volume 7B, Cell Culture and Somatic Cell Genetics of Plants. Edited by Bogorad, L. and Vasil, I.K. pp. 365-394.
30. Academic Press, San Diego. López-Juez, E. and Pyke, K.A. (2005) Plastids unleashed: their development and their integration in plant development. Int. J. Dev. Biol. 49: 557-577.
31. Loschelder, H., Schweer, J., Link, B. and Link, G. (2006) Dual temporal role of plastid sigma factor 6 in Arabidopsis development. Plant Physiol. 142: 642-650.
32. Lysenko, E. A. (2007) Plant sigma factors and their role in plastid transcription. Plant Cell Rep. 26: 845-859.
33. McCormac, A.C., Fischer, A., Kumar, A.M., Söll, D. and Terry, M.J. (2001) Regulation of HEMA1 expression by phytochrome and a plastid signal during de-etiolation in Arabidopsis thaliana. Plant J. 25: 549-561.
34. McCormac, A.C. and Terry, M.J. (2002) Light-signaling pathways leading to the co-ordinated expression of HEMA1 and Lhcb during chloroplast development in Arabidopsis thaliana. Plant J. 32: 549-559.
35. Nakamura, H., Hakata, M., Amano, K., Miyao, A., Toki, N., Kajikawa, M., et al. (2007) A genome-wide gain-of-function analysis of rice genes using the FOX-hunting system. Plant Mol. Biol. 65: 357-371.
36. Niwa, Y., Goto, S., Nakano, T., Sakaiya, M., Hirano, T., Tsukaya, H., et al. ( 2006 ) Arabidopsis mutants by activation tagging in which photosynthesis genes are expressed in dedifferentiated calli. Plant Cell Physiol. 47: 319-331.
37. Ohyanagi, H., Tanaka, T., Sakai, H., Shigemoto, Y., Yamaguchi, K., Habara, T., et al. (2006) The rice annotation project database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Nucleic Acids Res. 34: D741-D744.
38. Osterlund, M.T., Hardtke, C.S., Wei, N. and Deng, X.W. (2000) Targeted destabilization of HY5 during light-regulated development of Arabidopsis. Nature 405: 462-467.
39. Oyama, T., Shimura, Y. and Okada, K. (1997) The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11: 2983-2995.
40. Papenbrock, J.and Grimm,B.( 2001) Regulatory networkoftetrapyrrole biosynthesis-studies of intracellular signaling involved in metabolic and development control of plastids. Planta 213 667-681.
41. Possingham, J.V. (1980) Plastid replication and development in the life cycle of higher plants. Annu. Rev. Plant Physiol. 31: 113-129.
42. Rice Annotation Project (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res. 17: 175-183.
43. Rice Full-Length cDNA Consortium (2003) Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301: 376-379.
44. Riechmann, J.L., Heard, J., Martin, G., Reuber, L., Jiang, C., Keddie, J., et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290: 2105-2110.
45. Rossini, L., Cribb, L., Martin, D.J. and Langdale, J.A. (2001) The maize golden2 gene defi nes a novel class of transcriptional regulators in plants. Plant Cell 13: 1231-1244.
46. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
47. Savitch, L.V., Allard, G., Seki, M., Robert, L.S., Tinker, N.A., Huner, N.P.A., et al. (2005) The effect of overexpression of two Brassica CBF/ DREB1-like transcription factors on photosynthetic capacity and freezing tolerance in Brassica napus. Plant Cell Physiol. 46: 1525-1539.
48. Savitch, L.V., Subramaniam, R., Allard, G.C. and Singh, J. (2007) The GLK1 'regulon' encodes disease defense related proteins and confers resistance to Fusarium graminearum in Arabidopsis. Biochem. Biophys. Res. Commun. 359: 234-238.
49. Seo, H.S., Yang, J.Y., Ishikawa, M., Bolle, C., Ballesteros, M.L. and Chua, N.H. ( 2003 ) LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1. Nature 26: 995-999.
50. Shiina, T., Tsunoyama, Y., Nakahira, Y. and Khan M.S. (2005) Plastid RNA polymerases, promoters, and transcription regulators in higher plants. Int. Rev. Cytol. 244: 1-68.
51. Silhavy, D. and Maliga, P. (1998) Mapping of promoters for the nucleus-encoded plastid RNA polymerase (NEP) in the iojap maize mutant. Curr. Genet. 33: 340-344.
52. Soh, M.S., Kim, Y.M., Han, S.J. and Song, P.S. (2000) REP1, a basic helix-loop-helix protein, is required for a branch pathway of phytochrome A signaling in Arabidopsis. Plant Cell 12: 2061-2074.
53. Spiegelman, J.I., Mindrinos, M.N., Fankhauser, C., Richards, D., Lutes, J, Chory, J., et al. (2000) Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography. Plant Cell 12: 2485-2498.
54. Spurr, A.R. (1969) A low viscosity epoxy resin embedding medium for electron microscopy. J. Ultrastruct. Res. 26: 31-43.
55. Tamai, H., Iwabuchi, M. and Meshi, T. ( 2002 ) Arabidopsis GARP transcriptional activators interact with the Pro-rich activation domain shared by G-box-binding bZIP factors. Plant Cell Physiol. 43: 99-107.
56. Tanaka, A. and Tanaka, R. (2007) Tetrapyrrole biosynthesis in higher plants. Annu. Rev. Plant Biol. 58: 321-346.
57. Toki, S., Hara, N., Ono, K., Onodera, H., Tagiri, A., Oka, S., et al. (2006) Early infection of scutellum tissue with Agrobacterium allows highspeed transformation of rice. Plant J. 47: 969-976.
58. Tozawa, Y., Teraishi, M., Sasaki, T., Sonoike, K., Nishiyama, Y., Itaya, M., et al. (2007) The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts. Plant J. 52: 124-132.
59. Tsunoyama, Y., Ishizaki, Y., Morikawa, K., Kobori, M., Nakahira. Y., Takeba, G., et al. (2004) Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5. Proc. Natl Acad. Sci. USA 101: 3304-3309.
60. Ueno, O. (2004) Environmental regulation of photosynthetic metabolism in the amphibious sedge Eleocharis baldwinii and comparisons with related species. Plant Cell Environ. 27: 627-639.
61. Waters, M.T., Moylan, E.C. and Langdale, J.A. (2008) GLK transcription factors regulate chloroplast development in a cell-autonomous manner. Plant J. 56: 432-444.
62. Waters, M.T., Wang, P., Korkaric, M., Capper, R.G., Saunders, N.J. and Langdale, J.A. (2009) GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis. Plant Cell 21: 1109-1128.
63. Weihe, A. and Börner, T. (1999) Transcription and the architecture of promoters in chloroplasts. Trends Plant Sci. 4: 169-170.
64. Wildermuth, M.C., Dewdney, J., Wu, G. and Ausubel, F.M. (2001) Isochorismate synthase is required to synthesize salicylic acid for plant defence. Nature 414: 562-571.
65. Yasumura, Y., Moylan, E.C. and Langdale, J.A. (2005) A conserved transcription factor mediates nuclear control of organelle biogenesis in anciently diverged land plants. Plant Cell 17: 1894-1897.