-
1
-
-
70349736084
-
Experimental approaches for the discovery and characterization of regulatory small RNA
-
Sharma CM, Vogel J, (2009) Experimental approaches for the discovery and characterization of regulatory small RNA. Curr Opin Microbiol 12: 536-546.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 536-546
-
-
Sharma, C.M.1
Vogel, J.2
-
2
-
-
80052035218
-
Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli
-
Shinhara A, Matsui M, Hiraoka K, Nomura W, Hirano R, et al. (2011) Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli. BMC Genomics 12: 428.
-
(2011)
BMC Genomics
, vol.12
, pp. 428
-
-
Shinhara, A.1
Matsui, M.2
Hiraoka, K.3
Nomura, W.4
Hirano, R.5
-
3
-
-
84861000861
-
Comparative profiling of Pseudomonas aeruginosa strains reveals differential expression of novel unique and conserved small RNAs
-
Ferrara S, Brugnoli M, De Bonis A, Righetti F, Delvillani F, et al. (2012) Comparative profiling of Pseudomonas aeruginosa strains reveals differential expression of novel unique and conserved small RNAs. PLoS One 7: e36553.
-
(2012)
PLoS One
, vol.7
-
-
Ferrara, S.1
Brugnoli, M.2
De Bonis, A.3
Righetti, F.4
Delvillani, F.5
-
4
-
-
75249105828
-
A broadening world of bacterial small RNAs
-
Liu JM, Camilli A, (2010) A broadening world of bacterial small RNAs. Curr Opin Microbiol 13: 18-23.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 18-23
-
-
Liu, J.M.1
Camilli, A.2
-
5
-
-
77955155869
-
Base pairing small RNAs and their roles in global regulatory networks
-
Beisel CL, Storz G, (2010) Base pairing small RNAs and their roles in global regulatory networks. FEMS Microbiol Rev 34: 866-882.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 866-882
-
-
Beisel, C.L.1
Storz, G.2
-
6
-
-
57149111586
-
Small RNA binding to 5' mRNA coding region inhibits translational initiation
-
Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J, (2008) Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell 32: 827-837.
-
(2008)
Mol Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
7
-
-
57149118846
-
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
-
Guillier M, Gottesman S, (2008) The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. Nucleic Acids Res 36: 6781-6794.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6781-6794
-
-
Guillier, M.1
Gottesman, S.2
-
8
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
Sharma CM, Darfeuille F, Plantinga TH, Vogel J, (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev 21: 2804-2817.
-
(2007)
Genes Dev
, vol.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
Vogel, J.4
-
9
-
-
79951700321
-
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage
-
Prévost K, Desnoyers G, Jacques JF, Lavoie F, Massé E, (2011) Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage. Genes Dev 25: 385-396.
-
(2011)
Genes Dev
, vol.25
, pp. 385-396
-
-
Prévost, K.1
Desnoyers, G.2
Jacques, J.F.3
Lavoie, F.4
Massé, E.5
-
10
-
-
24944507588
-
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
-
Morita T, Maki K, Aiba H, (2005) RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev 19: 2176-2186.
-
(2005)
Genes Dev
, vol.19
, pp. 2176-2186
-
-
Morita, T.1
Maki, K.2
Aiba, H.3
-
11
-
-
15044340366
-
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB
-
Afonyushkin T, Vecerek B, Moll I, Bläsi, Kaberdin VR, (2005) Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. Nucleic Acids Res 33: 1678-1689.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1678-1689
-
-
Afonyushkin, T.1
Vecerek, B.2
Moll, I.3
Bläsi4
Kaberdin, V.R.5
-
12
-
-
40449098228
-
PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins
-
Andrade JM, Arraiano CM, (2008) PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins. RNA 14: 543-551.
-
(2008)
RNA
, vol.14
, pp. 543-551
-
-
Andrade, J.M.1
Arraiano, C.M.2
-
13
-
-
84858670765
-
The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq
-
Andrade JM, Pobre V, Matos AM, Arraiano CM, (2012) The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq. RNA 18: 844-855.
-
(2012)
RNA
, vol.18
, pp. 844-855
-
-
Andrade, J.M.1
Pobre, V.2
Matos, A.M.3
Arraiano, C.M.4
-
14
-
-
28244471582
-
Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control
-
Rasmussen AA, Eriksen M, Gilany K, Udesen C, Franch T, et al. (2005) Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. Mol Microbiol 58: 1421-1429.
-
(2005)
Mol Microbiol
, vol.58
, pp. 1421-1429
-
-
Rasmussen, A.A.1
Eriksen, M.2
Gilany, K.3
Udesen, C.4
Franch, T.5
-
15
-
-
25844458478
-
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA
-
Udekwu KI, Darfeuille F, Vogel J, Reimegard J, Holmqvist E, et al. (2005) Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev 19: 2355-2366.
-
(2005)
Genes Dev
, vol.19
, pp. 2355-2366
-
-
Udekwu, K.I.1
Darfeuille, F.2
Vogel, J.3
Reimegard, J.4
Holmqvist, E.5
-
16
-
-
34447542213
-
A small RNA downregulates LamB maltoporin in Salmonella
-
Bossi L, Figueroa-Bossi N, (2007) A small RNA downregulates LamB maltoporin in Salmonella. Mol Microbiol 65: 799-810.
-
(2007)
Mol Microbiol
, vol.65
, pp. 799-810
-
-
Bossi, L.1
Figueroa-Bossi, N.2
-
17
-
-
79961239912
-
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
-
Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA, (2011) Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci U S A 108: 12875-12880.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 12875-12880
-
-
Gogol, E.B.1
Rhodius, V.A.2
Papenfort, K.3
Vogel, J.4
Gross, C.A.5
-
18
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
19
-
-
78649346987
-
Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica
-
Balbontín R, Fiorini F, Figueroa-Bossi N, Casadesus J, Bossi L, (2010) Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica. Mol Microbiol 78: 380-394.
-
(2010)
Mol Microbiol
, vol.78
, pp. 380-394
-
-
Balbontín, R.1
Fiorini, F.2
Figueroa-Bossi, N.3
Casadesus, J.4
Bossi, L.5
-
20
-
-
80051973174
-
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action
-
Otaka H, Ishikawa H, Morita T, Aiba H, (2011) PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci U S A 108: 13059-13064.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 13059-13064
-
-
Otaka, H.1
Ishikawa, H.2
Morita, T.3
Aiba, H.4
-
21
-
-
78650532236
-
Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
-
Papenfort K, Bouvier M, Mika F, Sharma CM, Vogel J, (2010) Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA. Proc Natl Acad Sci U S A 107: 20435-20440.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 20435-20440
-
-
Papenfort, K.1
Bouvier, M.2
Mika, F.3
Sharma, C.M.4
Vogel, J.5
-
22
-
-
79956005312
-
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes
-
Rice JB, Vanderpool CK, (2011) The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Res 39: 3806-3819.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3806-3819
-
-
Rice, J.B.1
Vanderpool, C.K.2
-
23
-
-
67349192582
-
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
-
Papenfort K, Vogel J, (2009) Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res Microbiol 160: 278-287.
-
(2009)
Res Microbiol
, vol.160
, pp. 278-287
-
-
Papenfort, K.1
Vogel, J.2
-
24
-
-
79960433506
-
Hfq and its constellation of RNA
-
Vogel J, Luisi BF, (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9: 578-589.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
25
-
-
79958095433
-
Despite similar binding to the Hfq protein regulatory RNAs widely differ in their competition performance
-
Olejniczak M, (2011) Despite similar binding to the Hfq protein regulatory RNAs widely differ in their competition performance. Biochemistry 50: 4427-4440.
-
(2011)
Biochemistry
, vol.50
, pp. 4427-4440
-
-
Olejniczak, M.1
-
26
-
-
1642565815
-
The bacterial Sm-like protein Hfq: a key player in RNA transactions
-
Valentin-Hansen P, Eriksen M, Udesen C, (2004) The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol Microbiol 51: 1525-1533.
-
(2004)
Mol Microbiol
, vol.51
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
27
-
-
84860730931
-
Multiple activities of RNA-binding proteins S1 and Hfq
-
Hajnsdorf E, Boni IV, (2012) Multiple activities of RNA-binding proteins S1 and Hfq. Biochimie 94: 1544-1553.
-
(2012)
Biochimie
, vol.94
, pp. 1544-1553
-
-
Hajnsdorf, E.1
Boni, I.V.2
-
29
-
-
0036645689
-
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein
-
Schumacher MA, Pearson RF, Moller T, Valentin-Hansen P, Brennan RG, (2002) Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J 21: 3546-3556.
-
(2002)
EMBO J
, vol.21
, pp. 3546-3556
-
-
Schumacher, M.A.1
Pearson, R.F.2
Moller, T.3
Valentin-Hansen, P.4
Brennan, R.G.5
-
30
-
-
84862232515
-
Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition
-
Sauer E, Schmidt S, Weichenrieder O, (2012) Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition. Proc Natl Acad Sci U S A 109: 9396-9401.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 9396-9401
-
-
Sauer, E.1
Schmidt, S.2
Weichenrieder, O.3
-
31
-
-
0142240435
-
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
-
Moll I, Afonyushkin T, Vytvytska O, Kaberdin VR, Blasi U, (2003) Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA 9: 1308-1314.
-
(2003)
RNA
, vol.9
, pp. 1308-1314
-
-
Moll, I.1
Afonyushkin, T.2
Vytvytska, O.3
Kaberdin, V.R.4
Blasi, U.5
-
32
-
-
0030433928
-
Differential contributions of two elements of rho-independent terminator to transcription termination and mRNA stabilization
-
Abe H, Aiba H, (1996) Differential contributions of two elements of rho-independent terminator to transcription termination and mRNA stabilization. Biochimie 78: 1035-1042.
-
(1996)
Biochimie
, vol.78
, pp. 1035-1042
-
-
Abe, H.1
Aiba, H.2
-
33
-
-
0026544876
-
Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators
-
Reynolds R, Chamberlin MJ, (1992) Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators. J Mol Biol 224: 53-63.
-
(1992)
J Mol Biol
, vol.224
, pp. 53-63
-
-
Reynolds, R.1
Chamberlin, M.J.2
-
34
-
-
64049114548
-
The role of 3'-5' exoribonucleases in RNA degradation
-
Andrade JM, Pobre V, Silva IJ, Domingues S, Arraiano CM, (2009) The role of 3'-5' exoribonucleases in RNA degradation. Prog Mol Biol Transl Sci 85: 187-229.
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 187-229
-
-
Andrade, J.M.1
Pobre, V.2
Silva, I.J.3
Domingues, S.4
Arraiano, C.M.5
-
35
-
-
0032531720
-
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding
-
Altuvia S, Zhang A, Argaman L, Tiwari A, Storz G, (1998) The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J 17: 6069-6075.
-
(1998)
EMBO J
, vol.17
, pp. 6069-6075
-
-
Altuvia, S.1
Zhang, A.2
Argaman, L.3
Tiwari, A.4
Storz, G.5
-
36
-
-
0034725539
-
fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex
-
Argaman L, Altuvia S, (2000) fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex. J Mol Biol 300: 1101-1112.
-
(2000)
J Mol Biol
, vol.300
, pp. 1101-1112
-
-
Argaman, L.1
Altuvia, S.2
-
37
-
-
67349095027
-
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
-
Desnoyers G, Morissette A, Prévost K, Massé E, (2009) Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J 28: 1551-1561.
-
(2009)
EMBO J
, vol.28
, pp. 1551-1561
-
-
Desnoyers, G.1
Morissette, A.2
Prévost, K.3
Massé, E.4
-
38
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, et al. (2001) Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 11: 941-950.
-
(2001)
Curr Biol
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
-
39
-
-
77951191945
-
MicA sRNA links the PhoP regulon to cell envelope stress
-
Coornaert A, Lu A, Mandin P, Springer M, Gottesman S, et al. (2010) MicA sRNA links the PhoP regulon to cell envelope stress. Mol Microbiol 76: 467-479.
-
(2010)
Mol Microbiol
, vol.76
, pp. 467-479
-
-
Coornaert, A.1
Lu, A.2
Mandin, P.3
Springer, M.4
Gottesman, S.5
-
40
-
-
77955149193
-
The critical role of RNA processing and degradation in the control of gene expression
-
Arraiano CM, Andrade JM, Domingues S, Guinote IB, Malecki M, et al. (2010) The critical role of RNA processing and degradation in the control of gene expression. FEMS Microbiol Rev 34: 883-923.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 883-923
-
-
Arraiano, C.M.1
Andrade, J.M.2
Domingues, S.3
Guinote, I.B.4
Malecki, M.5
-
41
-
-
79954601376
-
Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway
-
Viegas SC, Silva IJ, Saramago M, Domingues S, Arraiano CM, (2011) Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway. Nucleic Acids Res 39: 2918-2930.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 2918-2930
-
-
Viegas, S.C.1
Silva, I.J.2
Saramago, M.3
Domingues, S.4
Arraiano, C.M.5
-
42
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN, (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99: 9697-9702.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
43
-
-
77949435074
-
Hfq affects mRNA levels independently of degradation
-
Le Derout J, Boni IV, Régnier P, Hajnsdorf E, (2010) Hfq affects mRNA levels independently of degradation. BMC Mol Biol 11: 17.
-
(2010)
BMC Mol Biol
, vol.11
, pp. 17
-
-
Le Derout, J.1
Boni, I.V.2
Régnier, P.3
Hajnsdorf, E.4
-
45
-
-
0347519274
-
The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation
-
Folichon M, Arluison V, Pellegrini O, Huntzinger E, Régnier P, et al. (2003) The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation. Nucleic Acids Res 31: 7302-7310.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 7302-7310
-
-
Folichon, M.1
Arluison, V.2
Pellegrini, O.3
Huntzinger, E.4
Régnier, P.5
-
46
-
-
64049113602
-
Poly(A)-assisted RNA decay and modulators of RNA stability
-
Régnier P, Hajnsdorf E, (2009) Poly(A)-assisted RNA decay and modulators of RNA stability. Prog Mol Biol Transl Sci 85: 137-185.
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 137-185
-
-
Régnier, P.1
Hajnsdorf, E.2
-
47
-
-
33745198703
-
High guanine and cytosine content increases mRNA levels in mammalian cells
-
Kudla G, Lipinski L, Caffin F, Helwak A, Zylicz M, (2006) High guanine and cytosine content increases mRNA levels in mammalian cells. PLoS Biol 4: e180.
-
(2006)
PLoS Biol
, vol.4
-
-
Kudla, G.1
Lipinski, L.2
Caffin, F.3
Helwak, A.4
Zylicz, M.5
-
48
-
-
79952786136
-
Accessibility and evolutionary conservation mark bacterial small-RNA target-binding regions
-
Peer A, Margalit H, (2011) Accessibility and evolutionary conservation mark bacterial small-RNA target-binding regions. J Bacteriol 193: 1690-1701.
-
(2011)
J Bacteriol
, vol.193
, pp. 1690-1701
-
-
Peer, A.1
Margalit, H.2
-
49
-
-
84859915108
-
Multiple factors dictate target selection by Hfq-binding small RNAs
-
Beisel CL, Updegrove TB, Janson BJ, Storz G, (2012) Multiple factors dictate target selection by Hfq-binding small RNAs. EMBO J 31: 1961-1974.
-
(2012)
EMBO J
, vol.31
, pp. 1961-1974
-
-
Beisel, C.L.1
Updegrove, T.B.2
Janson, B.J.3
Storz, G.4
-
50
-
-
77349104885
-
Reprogramming of anaerobic metabolism by the FnrS small RNA
-
Durand S, Storz G, (2010) Reprogramming of anaerobic metabolism by the FnrS small RNA. Mol Microbiol 75: 1215-1231.
-
(2010)
Mol Microbiol
, vol.75
, pp. 1215-1231
-
-
Durand, S.1
Storz, G.2
-
52
-
-
80052975908
-
Engineering biological systems with synthetic RNA molecules
-
Liang JC, Bloom RJ, Smolke CD, (2011) Engineering biological systems with synthetic RNA molecules. Mol Cell 43: 915-926.
-
(2011)
Mol Cell
, vol.43
, pp. 915-926
-
-
Liang, J.C.1
Bloom, R.J.2
Smolke, C.D.3
-
53
-
-
77952876523
-
RNA-mediated regulation in bacteria: from natural to artificial systems
-
Lioliou E, Romilly C, Romby P, Fechter P, (2010) RNA-mediated regulation in bacteria: from natural to artificial systems. N Biotechnol 27: 222-235.
-
(2010)
N Biotechnol
, vol.27
, pp. 222-235
-
-
Lioliou, E.1
Romilly, C.2
Romby, P.3
Fechter, P.4
-
54
-
-
0024095739
-
Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12
-
Arraiano CM, Yancey SD, Kushner SR, (1988) Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12. J Bacteriol 170: 4625-4633.
-
(1988)
J Bacteriol
, vol.170
, pp. 4625-4633
-
-
Arraiano, C.M.1
Yancey, S.D.2
Kushner, S.R.3
-
55
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640-6645.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
56
-
-
0025782890
-
Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli
-
Wang RF, Kushner SR, (1991) Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli. Gene 100: 195-199.
-
(1991)
Gene
, vol.100
, pp. 195-199
-
-
Wang, R.F.1
Kushner, S.R.2
-
57
-
-
34047094398
-
Sigma E controls biogenesis of the antisense RNA MicA
-
Udekwu KI, Wagner EG, (2007) Sigma E controls biogenesis of the antisense RNA MicA. Nucleic Acids Res 35: 1279-1288.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1279-1288
-
-
Udekwu, K.I.1
Wagner, E.G.2
-
58
-
-
32644447251
-
Hfq variant with altered RNA binding functions
-
Ziolkowska K, Derreumaux P, Folichon M, Pellegrini O, Régnier P, et al. (2006) Hfq variant with altered RNA binding functions. Nucleic Acids Res 34: 709-720.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 709-720
-
-
Ziolkowska, K.1
Derreumaux, P.2
Folichon, M.3
Pellegrini, O.4
Régnier, P.5
-
59
-
-
38449119903
-
DMS footprinting of structured RNAs and RNA-protein complexes
-
Tijerina P, Mohr S, Russell R, (2007) DMS footprinting of structured RNAs and RNA-protein complexes. Nat Protoc 2: 2608-2623.
-
(2007)
Nat Protoc
, vol.2
, pp. 2608-2623
-
-
Tijerina, P.1
Mohr, S.2
Russell, R.3
-
60
-
-
0034072868
-
Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expression
-
Benito Y, Kolb FA, Romby P, Lina G, Etienne J, et al. (2000) Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expression. RNA 6: 668-679.
-
(2000)
RNA
, vol.6
, pp. 668-679
-
-
Benito, Y.1
Kolb, F.A.2
Romby, P.3
Lina, G.4
Etienne, J.5
-
61
-
-
0033654522
-
Probing RNA structure and RNA-ligand complexes with chemical probes
-
Brunel C, Romby P, (2000) Probing RNA structure and RNA-ligand complexes with chemical probes. Methods Enzymol 318: 3-21.
-
(2000)
Methods Enzymol
, vol.318
, pp. 3-21
-
-
Brunel, C.1
Romby, P.2
-
62
-
-
77957015946
-
A small RNA promotes siderophore production through transcriptional and metabolic remodeling
-
Salvail H, Lanthier-Bourbonnais P, Sobota JM, Caza M, Benjamin JA, et al. (2010) A small RNA promotes siderophore production through transcriptional and metabolic remodeling. Proc Natl Acad Sci U S A 107: 15223-15228.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 15223-15228
-
-
Salvail, H.1
Lanthier-Bourbonnais, P.2
Sobota, J.M.3
Caza, M.4
Benjamin, J.A.5
-
63
-
-
84897585709
-
In-line probing analysis of riboswitches
-
Regulski EE, Breaker RR, (2008) In-line probing analysis of riboswitches. Methods Mol Biol 419: 53-67.
-
(2008)
Methods Mol Biol
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
64
-
-
0034804433
-
Escherichia coli ribonuclease III: affinity purification of hexahistidine-tagged enzyme and assays for substrate binding and cleavage
-
Amarasinghe AK, Calin-Jageman I, Harmouch A, Sun W, Nicholson AW, (2001) Escherichia coli ribonuclease III: affinity purification of hexahistidine-tagged enzyme and assays for substrate binding and cleavage. Methods Enzymol 342: 143-158.
-
(2001)
Methods Enzymol
, vol.342
, pp. 143-158
-
-
Amarasinghe, A.K.1
Calin-Jageman, I.2
Harmouch, A.3
Sun, W.4
Nicholson, A.W.5
-
65
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, et al. (2003) Multiple sequence alignment with the Clustal series of programs. Nucl Acids Res 31: 3497-3500.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
-
66
-
-
58249121729
-
RNAalifold: improved consensus structure prediction for RNA alignments
-
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF, (2008) RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 9: 474.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 474
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Will, S.3
Gruber, A.R.4
Stadler, P.F.5
-
67
-
-
0036163624
-
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs
-
Zhang A, Wassarman KM, Ortega J, Steven AC, Storz G, (2002) The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs. Mol Cell 9: 11-22.
-
(2002)
Mol Cell
, vol.9
, pp. 11-22
-
-
Zhang, A.1
Wassarman, K.M.2
Ortega, J.3
Steven, A.C.4
Storz, G.5
-
68
-
-
0027391014
-
Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III
-
Babitzke P, Granger L, Olszewski J, Kushner SR, (1993) Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III. J Bacteriol 175: 229-239.
-
(1993)
J Bacteriol
, vol.175
, pp. 229-239
-
-
Babitzke, P.1
Granger, L.2
Olszewski, J.3
Kushner, S.R.4
-
69
-
-
84897585709
-
In-line probing analysis of riboswitches
-
Regulski EE, Breaker RR, (2008) In-line probing analysis of riboswitches. Methods Mol Biol 419: 53-67.
-
(2008)
Methods Mol Biol
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
70
-
-
0034804433
-
Escherichia coli ribonuclease III: affinity purification of hexahistidine-tagged enzyme and assays for substrate binding and cleavage
-
Amarasinghe AK, Calin-Jageman I, Harmouch A, Sun W, Nicholson AW, (2001) Escherichia coli ribonuclease III: affinity purification of hexahistidine-tagged enzyme and assays for substrate binding and cleavage. Methods Enzymol 342: 143-158.
-
(2001)
Methods Enzymol
, vol.342
, pp. 143-158
-
-
Amarasinghe, A.K.1
Calin-Jageman, I.2
Harmouch, A.3
Sun, W.4
Nicholson, A.W.5
-
71
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R, (2004) Fast and effective prediction of microRNA/target duplexes. RNA 10: 1507-1517.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
72
-
-
79961239912
-
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
-
Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA, (2011) Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci U S A 108: 12875-12880.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 12875-12880
-
-
Gogol, E.B.1
Rhodius, V.A.2
Papenfort, K.3
Vogel, J.4
Gross, C.A.5
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