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Volumn 791, Issue , 2011, Pages 287-296

Mapping Open Chromatin with Formaldehyde-Assisted Isolation of Regulatory Elements

Author keywords

Diabetes; Epigenetics; FAIRE; Gene transcription; High throughput sequencing; Open chromatin; Pancreatic islets

Indexed keywords

CHLOROFORM; DNA; FORMALDEHYDE; PHENOL;

EID: 80054764373     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-316-5_21     Document Type: Chapter
Times cited : (9)

References (13)
  • 1
    • 37249012276 scopus 로고    scopus 로고
    • Nucleosome destabilization in the epigenetic regulation of gene expression
    • Henikoff S.(2008) Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 9,15–26.
    • (2008) Nat Rev Genet , vol.9 , pp. 15-26
    • Henikoff, S.1
  • 2
    • 68349125112 scopus 로고    scopus 로고
    • What controls nucleosome positions?
    • Segal E, Widom J.(2009) What controls nucleosome positions? Trends Genet 25, 335–343.
    • (2009) Trends Genet , vol.25 , pp. 335-343
    • Segal, E.1    Widom, J.2
  • 3
    • 0022799341 scopus 로고
    • Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast
    • Almer A, Horz W.(1986) Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast. EMBO J 5,2681–2687.
    • (1986) EMBO J , vol.5 , pp. 2681-2687
    • Almer, A.1    Horz, W.2
  • 4
    • 0024263822 scopus 로고
    • The formation and function of DNase I hypersensitive sites in the process of gene activation
    • Elgin SC.(1988) The formation and function of DNase I hypersensitive sites in the process of gene activation. J Biol Chem 263, 19259–19262.
    • (1988) J Biol Chem , vol.263 , pp. 19259-19262
    • Elgin, S.C.1
  • 5
    • 34250369627 scopus 로고    scopus 로고
    • FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
    • Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD.(2007) FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res 17,877–885.
    • (2007) Genome Res , vol.17 , pp. 877-885
    • Giresi, P.G.1    Kim, J.2    McDaniell, R.M.3    Iyer, V.R.4    Lieb, J.D.5
  • 6
    • 0038652118 scopus 로고    scopus 로고
    • Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin
    • Nagy PL, Cleary ML, Brown PO, Lieb JD.(2003) Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin. Proc Natl Acad Sci U S A 100,6364–6369.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 6364-6369
    • Nagy, P.L.1    Cleary, M.L.2    Brown, P.O.3    Lieb, J.D.4
  • 7
    • 67649524640 scopus 로고    scopus 로고
    • Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)
    • Giresi PG, Lieb JD.(2009) Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). Methods 48,233–239.
    • (2009) Methods , vol.48 , pp. 233-239
    • Giresi, P.G.1    Lieb, J.D.2
  • 8
    • 75649102519 scopus 로고    scopus 로고
    • Nucleosome landscape and control of transcription in the human malaria parasite
    • Ponts N, Harris EY, Prudhomme J et al.(2010) Nucleosome landscape and control of transcription in the human malaria parasite. Genome Res 20,228–238.
    • (2010) Genome Res , vol.20 , pp. 228-238
    • Ponts, N.1    Harris, E.Y.2    Prudhomme, J.3
  • 9
    • 61849119137 scopus 로고    scopus 로고
    • Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers
    • Eeckhoute J, Lupien M, Meyer CA et al.(2009) Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. Genome Res 19,372–380.
    • (2009) Genome Res , vol.19 , pp. 372-380
    • Eeckhoute, J.1    Lupien, M.2    Meyer, C.A.3
  • 10
    • 73249131172 scopus 로고    scopus 로고
    • A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae
    • Berchowitz LE, Hanlon SE, Lieb JD, Copenhaver GP.(2009) A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae. Genome Res 19,2245–2257.
    • (2009) Genome Res , vol.19 , pp. 2245-2257
    • Berchowitz, L.E.1    Hanlon, S.E.2    Lieb, J.D.3    Copenhaver, G.P.4
  • 11
    • 77649086970 scopus 로고    scopus 로고
    • A map of open chromatin in human pancreatic islets
    • Gaulton KJ, Nammo T, Pasquali L et al.(2010) A map of open chromatin in human pancreatic islets. Nat Genet 42,255–259.
    • (2010) Nat Genet , vol.42 , pp. 255-259
    • Gaulton, K.J.1    Nammo, T.2    Pasquali, L.3
  • 12
    • 9444291835 scopus 로고    scopus 로고
    • Islet graft assessment in the Edmonton Protocol: Implications for predicting long-term clinical outcome
    • Street CN, Lakey JR, Shapiro AM et al.(2004) Islet graft assessment in the Edmonton Protocol: implications for predicting long-term clinical outcome. Diabetes 53, 3107–3114.
    • (2004) Diabetes , vol.53 , pp. 3107-3114
    • Street, C.N.1    Lakey, J.R.2    Shapiro, A.M.3
  • 13
    • 54949147307 scopus 로고    scopus 로고
    • F-Seq: A feature density estimator for high-throughput sequence tags
    • Boyle AP, Guinney J, Crawford GE, Furey TS.(2008) F-Seq: a feature density estimator for high-throughput sequence tags. Bioinformatics 24,2537–2538.
    • (2008) Bioinformatics , vol.24 , pp. 2537-2538
    • Boyle, A.P.1    Guinney, J.2    Crawford, G.E.3    Furey, T.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.