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Volumn 8, Issue 1, 2013, Pages

Mining of Novel Thermo-Stable Cellulolytic Genes from a Thermophilic Cellulose-Degrading Consortium by Metagenomics

Author keywords

[No Author keywords available]

Indexed keywords

CELLULOSE; CELLULOSOME; GLYCOSIDASE;

EID: 84872345092     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0053779     Document Type: Article
Times cited : (53)

References (30)
  • 3
    • 84864567188 scopus 로고    scopus 로고
    • Expression and characterization of a novel metagenome-derived cellulase Exo2b and its application to improve cellulase activity in Trichoderma reesei
    • Geng A, Zou G, Yan X, Wang Q, Zhang J, et al. (2012) Expression and characterization of a novel metagenome-derived cellulase Exo2b and its application to improve cellulase activity in Trichoderma reesei. Appl Microbiol Biotechnol 96: 951-962.
    • (2012) Appl Microbiol Biotechnol , vol.96 , pp. 951-962
    • Geng, A.1    Zou, G.2    Yan, X.3    Wang, Q.4    Zhang, J.5
  • 4
    • 0029096520 scopus 로고
    • Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose
    • Healy FG, Ray RM, Aldrich HC, Wilkie AC, Ingram LO, et al. (1995) Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose. Appl Microbiol Biotechnol 43: 667-674.
    • (1995) Appl Microbiol Biotechnol , vol.43 , pp. 667-674
    • Healy, F.G.1    Ray, R.M.2    Aldrich, H.C.3    Wilkie, A.C.4    Ingram, L.O.5
  • 5
    • 84862018347 scopus 로고    scopus 로고
    • Metagenomic cellulases highly tolerant towards the presence of ionic liquids-linking thermostability and halotolerance
    • Ilmberger N, Meske D, Juergensen J, Schulte M, Barthen P, et al. (2012) Metagenomic cellulases highly tolerant towards the presence of ionic liquids-linking thermostability and halotolerance. Appl Microbiol Biotechnol 95: 135-146.
    • (2012) Appl Microbiol Biotechnol , vol.95 , pp. 135-146
    • Ilmberger, N.1    Meske, D.2    Juergensen, J.3    Schulte, M.4    Barthen, P.5
  • 6
    • 33748747949 scopus 로고    scopus 로고
    • Characterization of a metagenome-derived halotolerant cellulase
    • Voget S, Steele HL, Streit WR, (2006) Characterization of a metagenome-derived halotolerant cellulase. J Biotechnol 126: 26-36.
    • (2006) J Biotechnol , vol.126 , pp. 26-36
    • Voget, S.1    Steele, H.L.2    Streit, W.R.3
  • 7
    • 1042299326 scopus 로고    scopus 로고
    • Detecting cellulase and esterase enzyme activities encoded by novel genes present in environmental DNA libraries
    • Rees HC, Grant S, Jones B, Grant WD, Heaphy S, (2003) Detecting cellulase and esterase enzyme activities encoded by novel genes present in environmental DNA libraries. Extremophiles 7: 415-421.
    • (2003) Extremophiles , vol.7 , pp. 415-421
    • Rees, H.C.1    Grant, S.2    Jones, B.3    Grant, W.D.4    Heaphy, S.5
  • 8
    • 34547281343 scopus 로고    scopus 로고
    • Metagenomics and the global ocean survey: what's in it for us, and why should we care?
    • Nealson KH, Venter JC, (2007) Metagenomics and the global ocean survey: what's in it for us, and why should we care? ISME J 1: 185-187.
    • (2007) ISME J , vol.1 , pp. 185-187
    • Nealson, K.H.1    Venter, J.C.2
  • 9
    • 84865344067 scopus 로고    scopus 로고
    • Structure, fluctuation and magnitude of a natural grassland soil metagenome
    • Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, et al. (2012) Structure, fluctuation and magnitude of a natural grassland soil metagenome. ISME J 6: 1677-1687.
    • (2012) ISME J , vol.6 , pp. 1677-1687
    • Delmont, T.O.1    Prestat, E.2    Keegan, K.P.3    Faubladier, M.4    Robe, P.5
  • 10
    • 83555174830 scopus 로고    scopus 로고
    • Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
    • Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, et al. (2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480: 368-371.
    • (2011) Nature , vol.480 , pp. 368-371
    • Mackelprang, R.1    Waldrop, M.P.2    DeAngelis, K.M.3    David, M.M.4    Chavarria, K.L.5
  • 11
    • 79251587455 scopus 로고    scopus 로고
    • Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
    • Hess M, Sczyrba A, Egan R, Kim T-W, Chokhawala H, et al. (2011) Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen. Science 331: 463-467.
    • (2011) Science , vol.331 , pp. 463-467
    • Hess, M.1    Sczyrba, A.2    Egan, R.3    Kim, T.-W.4    Chokhawala, H.5
  • 12
    • 36549000721 scopus 로고    scopus 로고
    • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
    • Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, et al. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450: 560-565.
    • (2007) Nature , vol.450 , pp. 560-565
    • Warnecke, F.1    Luginbuhl, P.2    Ivanova, N.3    Ghassemian, M.4    Richardson, T.H.5
  • 13
    • 84863757651 scopus 로고    scopus 로고
    • Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen
    • Dai X, Zhu Y, Luo Y, Song L, Liu D, et al. (2012) Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen. PLoS ONE 7: e40430.
    • (2012) PLoS ONE , vol.7
    • Dai, X.1    Zhu, Y.2    Luo, Y.3    Song, L.4    Liu, D.5
  • 14
    • 52949115612 scopus 로고    scopus 로고
    • Microbiology: Metagenomics
    • Hugenholtz P, Tyson GW, (2008) Microbiology: Metagenomics. Nature 455: 481-483.
    • (2008) Nature , vol.455 , pp. 481-483
    • Hugenholtz, P.1    Tyson, G.W.2
  • 15
    • 84861346969 scopus 로고    scopus 로고
    • A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal
    • Albertsen M, Hansen LBS, Saunders AM, Nielsen PH, Nielsen KL, (2012) A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal. ISME J 6: 1094-1106.
    • (2012) ISME J , vol.6 , pp. 1094-1106
    • Albertsen, M.1    Hansen, L.B.S.2    Saunders, A.M.3    Nielsen, P.H.4    Nielsen, K.L.5
  • 16
    • 84865524626 scopus 로고    scopus 로고
    • Effects of substrate loading and co-substrates on thermophilic anaerobic conversion of microcrystalline cellulose and microbial communities revealed using high-throughput sequencing
    • Xia Y, Cai L, Zhang T, Fang HHP, (2012) Effects of substrate loading and co-substrates on thermophilic anaerobic conversion of microcrystalline cellulose and microbial communities revealed using high-throughput sequencing. Int J Hydrogen Energy 37: 13652-13659.
    • (2012) Int J Hydrogen Energy , vol.37 , pp. 13652-13659
    • Xia, Y.1    Cai, L.2    Zhang, T.3    Fang, H.H.P.4
  • 17
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 18
    • 0027225980 scopus 로고
    • New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
    • Henrissat B, Bairoch A, (1993) New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 293: 781-788.
    • (1993) Biochem J , vol.293 , pp. 781-788
    • Henrissat, B.1    Bairoch, A.2
  • 19
    • 77957093212 scopus 로고    scopus 로고
    • Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
    • Pope PB, Denman SE, Jones M, Tringe SG, Barry K, et al. (2010) Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proc Natl Acad Sci USA 107: 14793-14798.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 14793-14798
    • Pope, P.B.1    Denman, S.E.2    Jones, M.3    Tringe, S.G.4    Barry, K.5
  • 20
    • 60549114321 scopus 로고    scopus 로고
    • Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
    • Brulc JM, Antonopoulos DA, Berg Miller ME, Wilson MK, Yannarell AC, et al. (2009) Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci USA 106: 1948.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 1948
    • Brulc, J.M.1    Antonopoulos, D.A.2    Berg Miller, M.E.3    Wilson, M.K.4    Yannarell, A.C.5
  • 21
    • 0030759920 scopus 로고    scopus 로고
    • Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca
    • Sakon J, Irwin D, Wilson DB, Karplus PA, (1997) Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca. Nat Struct Biol 4: 810-818.
    • (1997) Nat Struct Biol , vol.4 , pp. 810-818
    • Sakon, J.1    Irwin, D.2    Wilson, D.B.3    Karplus, P.A.4
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 24
    • 23144452801 scopus 로고    scopus 로고
    • GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
    • Besemer J, Borodovsky M, (2005) GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 33: W451-W454.
    • (2005) Nucleic Acids Res , vol.33
    • Besemer, J.1    Borodovsky, M.2
  • 26
    • 0031743421 scopus 로고    scopus 로고
    • Profile Hidden Markov Models
    • Eddy SR, (1998) Profile Hidden Markov Models. Bioinformatics 14: 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 28
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.