-
1
-
-
31544452808
-
The Path Forward for Biofuels and Biomaterials
-
Ragauskas AJ, Williams CK, Davison BH, Britovsek G, Cairney J, et al. (2006) The Path Forward for Biofuels and Biomaterials. Science 311: 484-489.
-
(2006)
Science
, vol.311
, pp. 484-489
-
-
Ragauskas, A.J.1
Williams, C.K.2
Davison, B.H.3
Britovsek, G.4
Cairney, J.5
-
2
-
-
0036714783
-
Microbial Cellulose Utilization: Fundamentals and Biotechnology
-
Lynd LR, Weimer PJ, Van Zyl WH, Pretorius IS, (2002) Microbial Cellulose Utilization: Fundamentals and Biotechnology. Microbiol Mol Biol Rev 66: 506-577.
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 506-577
-
-
Lynd, L.R.1
Weimer, P.J.2
Van Zyl, W.H.3
Pretorius, I.S.4
-
3
-
-
84864567188
-
Expression and characterization of a novel metagenome-derived cellulase Exo2b and its application to improve cellulase activity in Trichoderma reesei
-
Geng A, Zou G, Yan X, Wang Q, Zhang J, et al. (2012) Expression and characterization of a novel metagenome-derived cellulase Exo2b and its application to improve cellulase activity in Trichoderma reesei. Appl Microbiol Biotechnol 96: 951-962.
-
(2012)
Appl Microbiol Biotechnol
, vol.96
, pp. 951-962
-
-
Geng, A.1
Zou, G.2
Yan, X.3
Wang, Q.4
Zhang, J.5
-
4
-
-
0029096520
-
Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose
-
Healy FG, Ray RM, Aldrich HC, Wilkie AC, Ingram LO, et al. (1995) Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose. Appl Microbiol Biotechnol 43: 667-674.
-
(1995)
Appl Microbiol Biotechnol
, vol.43
, pp. 667-674
-
-
Healy, F.G.1
Ray, R.M.2
Aldrich, H.C.3
Wilkie, A.C.4
Ingram, L.O.5
-
5
-
-
84862018347
-
Metagenomic cellulases highly tolerant towards the presence of ionic liquids-linking thermostability and halotolerance
-
Ilmberger N, Meske D, Juergensen J, Schulte M, Barthen P, et al. (2012) Metagenomic cellulases highly tolerant towards the presence of ionic liquids-linking thermostability and halotolerance. Appl Microbiol Biotechnol 95: 135-146.
-
(2012)
Appl Microbiol Biotechnol
, vol.95
, pp. 135-146
-
-
Ilmberger, N.1
Meske, D.2
Juergensen, J.3
Schulte, M.4
Barthen, P.5
-
6
-
-
33748747949
-
Characterization of a metagenome-derived halotolerant cellulase
-
Voget S, Steele HL, Streit WR, (2006) Characterization of a metagenome-derived halotolerant cellulase. J Biotechnol 126: 26-36.
-
(2006)
J Biotechnol
, vol.126
, pp. 26-36
-
-
Voget, S.1
Steele, H.L.2
Streit, W.R.3
-
7
-
-
1042299326
-
Detecting cellulase and esterase enzyme activities encoded by novel genes present in environmental DNA libraries
-
Rees HC, Grant S, Jones B, Grant WD, Heaphy S, (2003) Detecting cellulase and esterase enzyme activities encoded by novel genes present in environmental DNA libraries. Extremophiles 7: 415-421.
-
(2003)
Extremophiles
, vol.7
, pp. 415-421
-
-
Rees, H.C.1
Grant, S.2
Jones, B.3
Grant, W.D.4
Heaphy, S.5
-
8
-
-
34547281343
-
Metagenomics and the global ocean survey: what's in it for us, and why should we care?
-
Nealson KH, Venter JC, (2007) Metagenomics and the global ocean survey: what's in it for us, and why should we care? ISME J 1: 185-187.
-
(2007)
ISME J
, vol.1
, pp. 185-187
-
-
Nealson, K.H.1
Venter, J.C.2
-
9
-
-
84865344067
-
Structure, fluctuation and magnitude of a natural grassland soil metagenome
-
Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, et al. (2012) Structure, fluctuation and magnitude of a natural grassland soil metagenome. ISME J 6: 1677-1687.
-
(2012)
ISME J
, vol.6
, pp. 1677-1687
-
-
Delmont, T.O.1
Prestat, E.2
Keegan, K.P.3
Faubladier, M.4
Robe, P.5
-
10
-
-
83555174830
-
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
-
Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, et al. (2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480: 368-371.
-
(2011)
Nature
, vol.480
, pp. 368-371
-
-
Mackelprang, R.1
Waldrop, M.P.2
DeAngelis, K.M.3
David, M.M.4
Chavarria, K.L.5
-
11
-
-
79251587455
-
Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
-
Hess M, Sczyrba A, Egan R, Kim T-W, Chokhawala H, et al. (2011) Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen. Science 331: 463-467.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.-W.4
Chokhawala, H.5
-
12
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, et al. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450: 560-565.
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
-
13
-
-
84863757651
-
Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen
-
Dai X, Zhu Y, Luo Y, Song L, Liu D, et al. (2012) Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen. PLoS ONE 7: e40430.
-
(2012)
PLoS ONE
, vol.7
-
-
Dai, X.1
Zhu, Y.2
Luo, Y.3
Song, L.4
Liu, D.5
-
14
-
-
52949115612
-
Microbiology: Metagenomics
-
Hugenholtz P, Tyson GW, (2008) Microbiology: Metagenomics. Nature 455: 481-483.
-
(2008)
Nature
, vol.455
, pp. 481-483
-
-
Hugenholtz, P.1
Tyson, G.W.2
-
15
-
-
84861346969
-
A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal
-
Albertsen M, Hansen LBS, Saunders AM, Nielsen PH, Nielsen KL, (2012) A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal. ISME J 6: 1094-1106.
-
(2012)
ISME J
, vol.6
, pp. 1094-1106
-
-
Albertsen, M.1
Hansen, L.B.S.2
Saunders, A.M.3
Nielsen, P.H.4
Nielsen, K.L.5
-
16
-
-
84865524626
-
Effects of substrate loading and co-substrates on thermophilic anaerobic conversion of microcrystalline cellulose and microbial communities revealed using high-throughput sequencing
-
Xia Y, Cai L, Zhang T, Fang HHP, (2012) Effects of substrate loading and co-substrates on thermophilic anaerobic conversion of microcrystalline cellulose and microbial communities revealed using high-throughput sequencing. Int J Hydrogen Energy 37: 13652-13659.
-
(2012)
Int J Hydrogen Energy
, vol.37
, pp. 13652-13659
-
-
Xia, Y.1
Cai, L.2
Zhang, T.3
Fang, H.H.P.4
-
17
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
18
-
-
0027225980
-
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
-
Henrissat B, Bairoch A, (1993) New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 293: 781-788.
-
(1993)
Biochem J
, vol.293
, pp. 781-788
-
-
Henrissat, B.1
Bairoch, A.2
-
19
-
-
77957093212
-
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
-
Pope PB, Denman SE, Jones M, Tringe SG, Barry K, et al. (2010) Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proc Natl Acad Sci USA 107: 14793-14798.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14793-14798
-
-
Pope, P.B.1
Denman, S.E.2
Jones, M.3
Tringe, S.G.4
Barry, K.5
-
20
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc JM, Antonopoulos DA, Berg Miller ME, Wilson MK, Yannarell AC, et al. (2009) Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci USA 106: 1948.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1948
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Berg Miller, M.E.3
Wilson, M.K.4
Yannarell, A.C.5
-
21
-
-
0030759920
-
Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca
-
Sakon J, Irwin D, Wilson DB, Karplus PA, (1997) Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca. Nat Struct Biol 4: 810-818.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 810-818
-
-
Sakon, J.1
Irwin, D.2
Wilson, D.B.3
Karplus, P.A.4
-
22
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
23
-
-
68549104404
-
The Sequence Alignment/Map Format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence Alignment/Map Format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
24
-
-
23144452801
-
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
-
Besemer J, Borodovsky M, (2005) GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 33: W451-W454.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Besemer, J.1
Borodovsky, M.2
-
25
-
-
75549090603
-
The Pfam protein families database
-
doi:10.1093/nar/gkp985
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, et al. (2009) The Pfam protein families database. Nucleic Acids Research 38: D211-D222 doi:10.1093/nar/gkp985.
-
(2009)
Nucleic Acids Research
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
-
26
-
-
0031743421
-
Profile Hidden Markov Models
-
Eddy SR, (1998) Profile Hidden Markov Models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
27
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, et al. (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: D233-D238.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
-
28
-
-
53549118607
-
The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC bioinformatics 9: 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
-
29
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
30
-
-
33847702910
-
MEGAN Analysis of Metagenomic Data
-
Huson DH, Auch AF, Qi J, Schuster SC, (2007) MEGAN Analysis of Metagenomic Data. Genome Res 17: 377-386.
-
(2007)
Genome Res
, vol.17
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
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