Heme orientation modulates histidine dissociation and ligand binding kinetics in the hexacoordinated human neuroglobin

Journal of Biological Inorganic Chemistry

Volumn 18, Issue 1, 2013, Pages 111-122

  Bocahut, Anthony ^a,b   Derrien, Valérie ^a   Bernad, Sophie ^a   Sebban, Pierre ^a,d   Sacquin Mora, Sophie ^b   Guittet, Eric ^c   Lescop, Ewen ^c  

^a UNIVERSITÉ PARIS SUD   (France)

^b INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^c CNRS   (France)

^d Centre for Applied Research in Remote Sensing and GIS CARGIS   (Viet Nam)

Author keywords

Disulfide bridge; Heme orientation; Molecular dynamics; Neuroglobin; NMR

Indexed keywords

CYANIDE; CYSTEINE; FERRIC ION; HEME; HISTIDINE; IRON; NEUROGLOBIN;

AMINO ACID SUBSTITUTION; ARTICLE; BINDING KINETICS; COMPLEX FORMATION; DISSOCIATION; DISULFIDE BOND; ISOMER; LIGAND BINDING; MOLECULAR DYNAMICS; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTON NUCLEAR MAGNETIC RESONANCE; REDUCTION KINETICS; THERMODYNAMICS; WILD TYPE;

CYANIDES; DISULFIDES; DITHIOTHREITOL; GLOBINS; HEME; HISTIDINE; HUMANS; KINETICS; LIGANDS; MOLECULAR DYNAMICS SIMULATION; MUTAGENESIS, SITE-DIRECTED; MUTATION; NERVE TISSUE PROTEINS; OXIDATION-REDUCTION; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY;

MAMMALIA;

EID: 84872324458     PISSN: 09498257     EISSN: 14321327     Source Type: Journal    
DOI: 10.1007/s00775-012-0956-2     Document Type: Article

References (76)

1. Burmester T, Weich B, Reinhardt S, Hankeln T (2000) Nature 407:520-523
2. Burmester T, Hankeln T (2009) J Exp Biol 212:1423-1428
3. Brunori M, Vallone B (2007) Cell Mol Life Sci 64:1259-1268
4. Brunori M, Vallone B (2006) FASEB J 20:2192-2197
5. Nienhaus K, Nienhaus GU (2007) IUBMB Life 59:490-497
6. Vinogradov SN, Hoogewijs D, Bailly X, Arredondo-Peter R, Gough J, Dewilde S, Moens L, Vanfleteren JR (2006) BMC Evol Biol 6:31
7. Vinogradov SN, Hoogewijs D, Bailly X, Mizuguchi K, Dewilde S, Moens L, Vanfleteren JR (2007) Gene 398:132-142
8. Vinogradov SN, Moens L (2008) J Biol Chem 283:8773-8777
9. Hardison RC (1996) Proc Natl Acad Sci USA 93:5675-5679
10. Kakar S, Hoffman FG, Storz JF, Fabian M, Hargrove MS (2010) Biophys Chem 152:1-14
11. Wajcman H, Kiger L, Marden MC (2009) C R Biol 332:273-282
12. Herold S, Fago A, Weber RE, Dewilde S, Moens L (2004) J Biol Chem 279:22841-22847
13. Giuffre A, Moschetti T, Vallone B, Brunori M (2008) Biochem Biophys Res Commun 367:893-898
14. Kriegl JM, Bhattacharyya AJ, Nienhaus K, Deng P, Minkow O, Nienhaus GU (2002) Proc Natl Acad Sci USA 99:7992-7997
15. Brunori M, Giuffre A, Nienhaus K, Nienhaus GU, Scandurra FM, Vallone B (2005) Proc Natl Acad Sci USA 102:8483-8488
16. Khan AA, Mao XO, Banwait S, Jin K, Greenberg DA (2007) Proc Natl Acad Sci USA 104:19114-19119
17. Watanabe S, Wakasugi K (2008) Biochem Biophys Res Commun 369:695-700
18. Sun Y, Jin K, Mao XO, Zhu Y, Greenberg DA (2001) Proc Natl Acad Sci USA 98:15306-15311
19. Sun Y, Jin K, Peel A, Mao XO, Xie L, Greenberg DA (2003) Proc Natl Acad Sci USA 100:3497-3500
20. Greenberg DA, Jin K, Khan AA (2008) Curr Opin Pharmacol 8:20-24
21. Bashford D, Chothia C, Lesk AM (1987) J Mol Biol 196:199-216
22. Pesce A, Dewilde S, Nardini M, Moens L, Ascenzi P, Hankeln T, Burmester T, Bolognesi M (2003) Structure 11:1087-1095
23. Vallone B, Nienhaus K, Brunori M, Nienhaus GU (2004) Proteins 56:85-92
24. Dewilde S, Kiger L, Burmester T, Hankeln T, Baudin-Creuza V, Aerts T, Marden MC, Caubergs R, Moens L (2001) J Biol Chem 276:38949-38955
25. Pesce A, De Sanctis D, Nardini M, Dewilde S, Moens L, Hankeln T, Burmester T, Ascenzi P, Bolognesi M (2004) IUBMB Life 56:657-664
26. Vallone B, Nienhaus K, Matthes A, Brunori M, Nienhaus GU (2004) Proc Natl Acad Sci USA 101:17351-17356
27. Bocahut A, Bernad S, Sebban P, Sacquin-Mora S (2009) J Phys Chem B 113:16257-16267
28. Du W, Syvitski R, Dewilde S, Moens L, La Mar GN (2003) J Am Chem Soc 125:8080-8081
29. Yin G, Li Y, Li J, Du W, Wei Q, Fang W (2008) Biophys Chem 136:115-123
30. Xu J, Li L, Yin G, Li H, Du W (2009) J Inorg Biochem 103:1693-1701
31. Walker FA (2006) J Biol Inorg Chem 11:391-397
32. Hamdane D, Kiger L, Dewilde S, Green BN, Pesce A, Uzan J, Burmester T, Hankeln T, Bolognesi M, Moens L, Marden MC (2003) J Biol Chem 278:51713-51721
33. Hamdane D, Kiger L, Dewilde S, Green BN, Pesce A, Uzan J, Burmester T, Hankeln T, Bolognesi M, Moens L, Marden MC (2004) Micron 35:59-62
34. Astudillo L, Bernad S, Derrien V, Sebban P, Miksovska J (2010) Biophys J 99:L16-L18
35. Nadra AD, Marti MA, Pesce A, Bolognesi M, Estrin DA (2008) Proteins 71:695-705
36. Dewilde S, Mees K, Kiger L, Lechauve C, Marden MC, Pesce A, Bolognesi M, Moens L (2008) Methods Enzymol 436:341-357
37. Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) J Biomol NMR 6:277-293
38. Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED (2005) Proteins 59:687-696
39. Van Der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJ (2005) J Comput Chem 26:1701-1718
40. Berendsen HJC, van der Spoel D, van Drunen R (1995) Comput Phys Commun 91:43-56
41. Lindahl E, Hess B, van der Spoel D (2001) J Mol Model 7:306-317
42. Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL (2001) J Phys Chem B 105:6474-6487
43. Miyamoto S, Kollman P (1992) J Comput Chem 13:952-962
44. Berendsen HJC, Postma JPM, van Gunsteren WF, DiNola A, Haak JR (1984) J Chem Phys 81:3684-3690
45. Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG (1995) J Chem Phys 103:8577-8593
46. Hess B, Bekker H, Berendsen HJC, Fraaije J (1997) J Comput Chem 18:1463-1472
47. Bertini I, Luchinat C, Parigi G, Walker F (1999) J Biol Inorg Chem 4:515-519
48. Shokhirev N, Walker F (1998) J Biol Inorg Chem 3:581-594
49. Hamdane D, Lechauve C, Marden MC, Golinelli-Pimpaneau B (2009) Acta Crystallogr D Biol Crystallogr 65:388-392
50. Vinck E, Van Doorslaer S, Dewilde S, Moens L (2004) J Am Chem Soc 126:4516-4517
51. Ezhevskaya M, Trandafir F, Moens L, Dewilde S, Van Doorslaer S (2011) J Inorg Biochem 105:1131-1137
52. Ishikawa H, Kim S, Kwak K, Wakasugi K, Fayer MD (2007) Proc Natl Acad Sci USA 104:19309-19314
53. Mintorovitch J, van Pelt D, Satterlee JD (1989) Biochemistry 28:6099-6104
54. Vu BC, Nothnagel HJ, Vuletich DA, Falzone CJ, Lecomte JT (2004) Biochemistry 43:12622-12633
55. Brancaccio A, Cutruzzola F, Allocatelli CT, Brunori M, Smerdon SJ, Wilkinson AJ, Dou Y, Keenan D, Ikeda-Saito M, Brantley RE Jr et al (1994) J Biol Chem 269:13843-13853
56. Springer BA, Sliger S, Olson JS, Phillips GNJ (1994) Chem Rev 94:699-714
57. Dou Y, Olson JS, Wilkinson AJ, Ikeda-Saito M (1996) Biochemistry 35:7107-7113
58. Park HJ, Yang C, Treff N, Satterlee JD, Kang C (2002) Proteins 49:49-60
59. Smagghe BJ, Sarath G, Ross E, Hilbert JL, Hargrove MS (2006) Biochemistry 45:561-570
60. Trent JT 3rd, Watts RA, Hargrove MS (2001) J Biol Chem 276:30106-30110
61. Hamdane D, Kiger L, Dewilde S, Uzan J, Burmester T, Hankeln T, Moens L, Marden MC (2005) FEBS J 272:2076-2084
62. Tilton RF Jr, Kuntz ID Jr, Petsko GA (1984) Biochemistry 23:2849-2857
63. Brunori M, Gibson QH (2001) EMBO Rep 2:674-679
64. Milani M, Pesce A, Ouellet Y, Ascenzi P, Guertin M, Bolognesi M (2001) EMBO J 20:3902-3909
65. Bourgeois D, Vallone B, Schotte F, Arcovito A, Miele AE, Sciara G, Wulff M, Anfinrud P, Brunori M (2003) Proc Natl Acad Sci USA 100:8704-8709
66. Schotte F, Lim M, Jackson TA, Smirnov AV, Soman J, Olson JS, Phillips GN Jr, Wulff M, Anfinrud PA (2003) Science 300:1944-1947
67. Bossa C, Amadei A, Daidone I, Anselmi M, Vallone B, Brunori M, Di Nola A (2005) Biophys J 89:465-474
68. Bossa C, Anselmi M, Roccatano D, Amadei A, Vallone B, Brunori M, Di Nola A (2004) Biophys J 86:3855-3862
69. Mouawad L, Marechal JD, Perahia D (2005) Biochim Biophys Acta 1724:385-393
70. Cohen J, Arkhipov A, Braun R, Schulten K (2006) Biophys J 91:1844-1857
71. Ceccarelli M, Anedda R, Casu M, Ruggerone P (2008) Proteins 71:1231-1236
72. Cohen J, Schulten K (2007) Biophys J 93:3591-3600
73. Elber R, Gibson QH (2008) J Phys Chem B 112:6147-6154
74. Abbruzzetti S, Faggiano S, Bruno S, Spyrakis F, Mozzarelli A, Dewilde S, Moens L, Viappiani C (2009) Proc Natl Acad Sci USA 106:18984-18989
75. Bocahut A, Bernad S, Sebban P, Sacquin-Mora S (2011) J Am Chem Soc 133:8753-8761
76. Liu J, Yu Z, Guo S, Lee SR, Xing C, Zhang C, Gao Y, Nicholls DG, Lo EH, Wang X (2009) J Neurosci Res 87:164-170